Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46697 * 2 1 4 4 N 1.46501 * 109.46611 * 179.97438 * 3 2 1 5 5 C 1.34775 * 119.99864 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99967 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46508 * 119.99906 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46772 * 60.00918 * 8 7 5 10 10 C 1.52998 * 109.47202 * 300.00535 * 8 7 5 11 11 C 1.50700 * 109.46929 * 180.02562 * 8 7 5 12 12 O 1.21282 * 119.99829 * 144.99996 * 11 8 7 13 13 N 1.34774 * 120.00347 * 325.00709 * 11 8 7 14 14 C 1.46493 * 120.00256 * 179.97438 * 13 11 8 15 15 C 1.53349 * 109.42022 * 275.12556 * 14 13 11 16 16 C 1.53196 * 109.15353 * 178.67345 * 15 14 13 17 17 N 1.46928 * 108.89135 * 54.57497 * 16 15 14 18 18 C 1.36936 * 120.63013 * 126.29699 * 17 16 15 19 19 H 1.07999 * 120.00022 * 331.83633 * 18 17 16 20 20 C 1.38813 * 120.00005 * 151.82709 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.09585 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.09475 * 20 18 17 23 23 H 1.48494 * 109.47083 * 60.00061 * 22 20 18 24 24 H 1.48500 * 109.46851 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47024 * 300.00112 * 22 20 18 26 26 C 1.46924 * 118.73859 * 306.32337 * 17 16 15 27 27 C 1.53044 * 109.46300 * 154.99736 * 14 13 11 28 28 H 1.08996 * 109.47028 * 299.99670 * 1 2 3 29 29 H 1.08999 * 109.47096 * 59.99725 * 1 2 3 30 30 H 1.09001 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47028 * 240.00330 * 2 1 3 32 32 H 1.08996 * 109.47535 * 120.00006 * 2 1 3 33 33 H 1.08996 * 109.47112 * 60.00382 * 3 2 1 34 34 H 1.09001 * 109.47288 * 299.99536 * 3 2 1 35 35 H 0.97004 * 120.00437 * 0.02562 * 4 3 2 36 36 H 0.97004 * 120.00233 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.47075 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47147 * 299.99322 * 9 8 7 39 39 H 1.09000 * 109.47644 * 59.99584 * 9 8 7 40 40 H 1.09000 * 109.47453 * 299.99888 * 10 8 7 41 41 H 1.08996 * 109.46943 * 60.00323 * 10 8 7 42 42 H 1.08997 * 109.46968 * 179.97438 * 10 8 7 43 43 H 0.97003 * 119.99662 * 359.97438 * 13 11 8 44 44 H 1.09003 * 109.46113 * 35.02623 * 14 13 11 45 45 H 1.08998 * 109.68701 * 58.70834 * 15 14 13 46 46 H 1.09000 * 109.47234 * 298.50902 * 15 14 13 47 47 H 1.08996 * 109.58345 * 294.72319 * 16 15 14 48 48 H 1.08994 * 109.58644 * 174.43734 * 16 15 14 49 49 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.58664 * 173.39523 * 26 17 16 51 51 H 1.08996 * 109.58580 * 293.67452 * 26 17 16 52 52 H 1.08992 * 109.49619 * 61.43083 * 27 14 13 53 53 H 1.08999 * 109.52313 * 301.35096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5709 3.6627 -0.0002 7 7 5.5266 2.6098 0.0013 8 6 6.2591 3.8786 0.0014 9 6 5.8885 4.6812 1.2502 10 6 5.8904 4.6805 -1.2483 11 6 7.7407 3.6033 0.0021 12 8 8.4943 4.3383 -0.6002 13 7 8.2283 2.5402 0.6718 14 6 9.6685 2.2722 0.6719 15 6 10.0381 1.4704 -0.5819 16 6 11.5498 1.2223 -0.5924 17 7 11.9352 0.5802 0.6717 18 6 12.6402 -0.5937 0.6715 19 1 12.5397 -1.2838 -0.1532 20 6 13.4841 -0.8968 1.7311 21 7 13.8692 0.0522 2.5579 22 14 14.0733 -2.6514 1.9837 23 1 14.8280 -3.0974 0.7851 24 1 14.9568 -2.7101 3.1758 25 1 12.9029 -3.5415 2.1912 26 6 11.5493 1.2214 1.9361 27 6 10.0378 1.4699 1.9218 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 3.9900 0.6025 0.0006 36 1 6.0117 1.7697 0.0020 37 1 6.4338 5.6250 1.2506 38 1 4.8169 4.8804 1.2493 39 1 6.1512 4.1099 2.1405 40 1 6.1543 4.1087 -2.1380 41 1 4.8188 4.8797 -1.2491 42 1 6.4350 5.6247 -1.2480 43 1 7.6255 1.9524 1.1537 44 1 10.2136 3.2161 0.6723 45 1 9.7554 2.0311 -1.4729 46 1 9.5128 0.5155 -0.5706 47 1 12.0752 2.1717 -0.6950 48 1 11.8072 0.5701 -1.4269 49 1 14.4586 -0.1597 3.2986 50 1 11.8042 0.5675 2.7701 51 1 12.0767 2.1695 2.0408 52 1 9.5122 0.5151 1.9096 53 1 9.7529 2.0307 2.8120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230353313.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -78.408441 kcal Electronic energy + Delta-G solvation = -30847.278429 eV Core-core repulsion = 26753.208876 eV Total energy + Delta-G solvation = -4094.069553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.96006 -40.67188 -39.09365 -37.32841 -36.19613 -36.06849 -33.89788 -33.88606 -31.86605 -31.80923 -31.16255 -28.30953 -27.24805 -26.87921 -25.04525 -23.90884 -23.19629 -22.51095 -22.06238 -21.15169 -20.52756 -19.77708 -18.78396 -18.34208 -17.24942 -16.85991 -16.80061 -16.69289 -16.21198 -15.73108 -15.65655 -15.42437 -15.37907 -15.30518 -14.99050 -14.74791 -14.51730 -14.09959 -13.96980 -13.78868 -13.49149 -13.38664 -13.20351 -13.18737 -13.01079 -12.88774 -12.78721 -12.58656 -12.54488 -12.37614 -12.25073 -12.04070 -11.97506 -11.87370 -11.70270 -11.59003 -11.40976 -11.27884 -10.70624 -10.54663 -10.41436 -10.10027 -9.86772 -8.70291 -7.87316 -5.33029 1.25857 1.49913 1.50998 1.58351 1.75404 1.95475 2.15042 2.52594 3.19061 3.28387 3.45821 3.67014 3.83796 3.90700 3.94800 3.97357 4.05896 4.13986 4.31961 4.40347 4.46247 4.58862 4.65130 4.68910 4.73329 4.74572 4.78163 4.80644 4.82503 4.85087 4.89151 5.01102 5.04980 5.14184 5.15299 5.19928 5.23009 5.29500 5.29922 5.32901 5.38960 5.46506 5.47878 5.58594 5.65210 5.71986 5.90731 6.39017 6.43803 7.02156 7.09949 7.15095 7.56326 7.84749 8.37366 9.19572 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012700 B = 0.002439 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.231407 B =11478.057182 C =13007.346386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.138 3.862 4 N -0.735 5.735 5 C 0.707 3.293 6 O -0.615 6.615 7 N -0.731 5.731 8 C 0.190 3.810 9 C -0.155 4.155 10 C -0.145 4.145 11 C 0.519 3.481 12 O -0.563 6.563 13 N -0.704 5.704 14 C 0.161 3.839 15 C -0.123 4.123 16 C 0.143 3.857 17 N -0.608 5.608 18 C -0.263 4.263 19 H 0.068 0.932 20 C -0.050 4.050 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.178 3.822 27 C -0.128 4.128 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.411 0.589 36 H 0.408 0.592 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.411 0.589 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.058 0.942 49 H 0.250 0.750 50 H 0.063 0.937 51 H -0.007 1.007 52 H 0.074 0.926 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.171 0.203 -3.058 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.014 3.986 4 N -0.391 5.391 5 C 0.407 3.593 6 O -0.496 6.496 7 N -0.390 5.390 8 C 0.100 3.900 9 C -0.213 4.213 10 C -0.203 4.203 11 C 0.304 3.696 12 O -0.440 6.440 13 N -0.355 5.355 14 C 0.056 3.944 15 C -0.163 4.163 16 C 0.017 3.983 17 N -0.331 5.331 18 C -0.393 4.393 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.051 3.949 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.248 0.752 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.023 0.977 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.081 0.919 51 H 0.011 0.989 52 H 0.093 0.907 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.068 1.658 -3.360 26.336 hybrid contribution 1.193 -1.495 0.422 1.959 sum -24.874 0.163 -2.938 25.048 Atomic orbital electron populations 1.21687 0.94239 1.02672 1.02243 1.21691 0.97098 0.94240 1.03555 1.21298 0.77532 0.98342 1.01449 1.45095 1.07679 1.06938 1.79379 1.15966 0.81387 0.84598 0.77373 1.90859 1.68413 1.31381 1.58909 1.45092 1.04751 1.08575 1.80616 1.20212 0.85615 0.85252 0.98958 1.22157 1.04254 0.99976 0.94922 1.22000 1.03246 1.00049 0.95014 1.20729 0.90233 0.80512 0.78078 1.90736 1.60036 1.48715 1.44527 1.46111 1.08714 1.28341 1.52359 1.20780 0.79979 0.97817 0.95790 1.22221 0.97083 0.99917 0.97061 1.20967 0.93189 0.95140 0.88997 1.44332 1.63182 1.24829 1.00796 1.19477 1.18189 0.95021 1.06581 0.91404 1.25823 0.97530 1.01176 1.00029 1.70176 1.36935 1.32358 1.18705 0.85330 0.77791 0.80351 0.76878 1.20402 1.22270 1.19974 1.20567 0.90159 0.94778 0.89371 1.22251 0.98296 0.99914 0.96298 0.92451 0.92518 0.91372 0.90576 0.90425 0.92495 0.92707 0.75298 0.75536 0.91219 0.89643 0.91104 0.92797 0.90023 0.91280 0.75161 0.92315 0.92067 0.90904 0.97702 0.92385 0.94054 0.91874 0.98896 0.90720 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 71.98 0.71 -0.28 16 2 C -0.13 -0.87 6.05 30.60 0.19 -0.68 16 3 C 0.14 1.64 5.67 86.38 0.49 2.13 16 4 N -0.73 -9.09 5.56 -478.53 -2.66 -11.75 16 5 C 0.71 13.31 7.98 179.05 1.43 14.74 16 6 O -0.62 -15.98 12.55 -3.98 -0.05 -16.03 16 7 N -0.73 -12.00 4.86 -441.44 -2.15 -14.14 16 8 C 0.19 4.08 0.98 2.85 0.00 4.08 16 9 C -0.15 -3.19 8.38 71.98 0.60 -2.59 16 10 C -0.14 -3.42 7.93 71.98 0.57 -2.85 16 11 C 0.52 13.53 6.61 87.66 0.58 14.11 16 12 O -0.56 -19.53 15.76 -3.04 -0.05 -19.58 16 13 N -0.70 -16.26 4.77 -441.92 -2.11 -18.36 16 14 C 0.16 5.00 2.42 45.12 0.11 5.11 16 15 C -0.12 -4.02 5.68 30.78 0.17 -3.84 16 16 C 0.14 5.94 6.51 86.36 0.56 6.50 16 17 N -0.61 -29.57 2.99 -699.11 -2.09 -31.66 16 18 C -0.26 -13.98 9.58 84.03 0.81 -13.18 16 19 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 20 C -0.05 -2.72 4.92 84.86 0.42 -2.31 16 21 N -0.94 -54.23 11.20 21.65 0.24 -53.99 16 22 Si 0.97 43.44 29.59 68.60 2.03 45.47 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 26 C 0.18 8.16 5.30 86.36 0.46 8.62 16 27 C -0.13 -4.21 5.55 30.67 0.17 -4.04 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.41 2.81 8.49 -92.71 -0.79 2.02 16 36 H 0.41 4.81 7.25 -92.71 -0.67 4.14 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.95 6.16 -2.39 -0.01 1.93 16 39 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 2.03 6.16 -2.39 -0.01 2.01 16 42 H 0.07 1.70 7.87 -2.39 -0.02 1.69 16 43 H 0.41 6.82 7.35 -92.71 -0.68 6.14 16 44 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 49 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 50 H 0.06 3.27 6.06 -2.39 -0.01 3.25 16 51 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 52 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 53 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.65 413.40 -0.79 -71.44 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -1.22 Total: 23.08 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 7.27 Total: 25.53 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -8.77 Total: -129.91 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.10 Total: -35.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -70.65 -0.79 -71.44 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230353313.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.968 kcal (2) G-P(sol) polarization free energy of solvation -70.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds