Wall clock time and date at job start Sat Apr 11 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46935 * 2 1 4 4 N 1.46900 * 109.47021 * 119.99820 * 2 1 3 5 5 C 1.46897 * 111.00136 * 306.05018 * 4 2 1 6 6 C 1.46900 * 110.99877 * 70.00562 * 4 2 1 7 7 C 1.50696 * 109.47072 * 170.00231 * 6 4 2 8 8 O 1.21278 * 120.00098 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99810 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99826 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.51978 * 204.99618 * 10 9 7 12 12 C 1.53039 * 109.27478 * 182.37658 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47325 * 120.00225 * 22 20 18 25 25 H 1.48503 * 109.47321 * 240.00026 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.09001 * 109.46911 * 60.00137 * 1 2 3 29 29 H 1.09003 * 109.46721 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46928 * 299.99889 * 1 2 3 31 31 H 1.08996 * 109.46887 * 240.00458 * 2 1 3 32 32 H 1.08997 * 109.47360 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46798 * 300.00251 * 3 2 1 34 34 H 1.09004 * 109.46888 * 59.99861 * 3 2 1 35 35 H 1.09000 * 109.47127 * 183.95691 * 5 4 2 36 36 H 1.09005 * 109.47125 * 303.95133 * 5 4 2 37 37 H 1.09001 * 109.47637 * 63.95131 * 5 4 2 38 38 H 1.09000 * 109.47319 * 49.99382 * 6 4 2 39 39 H 1.09009 * 109.46912 * 289.99591 * 6 4 2 40 40 H 0.97000 * 120.00090 * 359.97438 * 9 7 6 41 41 H 1.08994 * 109.52080 * 325.12579 * 10 9 7 42 42 H 1.08998 * 109.50519 * 62.44346 * 11 10 9 43 43 H 1.08998 * 109.50523 * 302.31571 * 11 10 9 44 44 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 45 45 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 46 46 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 47 47 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 48 48 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 49 49 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 51 51 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 52 52 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 53 53 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.4343 -0.1149 2.4167 6 6 1.7530 -2.1349 1.1203 7 6 2.4774 -2.8416 2.2368 8 8 3.1500 -2.2064 3.0210 9 7 2.3787 -4.1798 2.3633 10 6 3.0834 -4.8670 3.4485 11 6 3.3424 -6.3224 3.0494 12 6 4.0254 -7.0504 4.2094 13 7 3.1647 -6.9958 5.3979 14 6 3.7245 -7.8021 6.4908 15 6 3.6983 -9.2586 6.1049 16 8 3.1548 -9.6039 5.0770 17 7 4.2789 -10.1775 6.9018 18 6 4.2547 -11.5026 6.5509 19 1 3.7707 -11.8100 5.6357 20 6 4.8528 -12.4499 7.3728 21 7 5.4413 -12.0758 8.4867 22 14 4.8204 -14.2553 6.8944 23 1 4.1024 -14.4127 5.6040 24 1 6.2116 -14.7543 6.7503 25 1 4.1219 -15.0342 7.9483 26 6 2.9405 -5.6097 5.8280 27 6 2.2252 -4.8387 4.7163 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.8664 -0.5987 3.2926 36 1 1.6466 0.9538 2.4502 37 1 0.3555 -0.2710 2.4105 38 1 2.1026 -2.5169 0.1612 39 1 0.6814 -2.3119 1.2132 40 1 1.8410 -4.6879 1.7359 41 1 4.0329 -4.3672 3.6401 42 1 3.9885 -6.3496 2.1719 43 1 2.3954 -6.8110 2.8202 44 1 4.9787 -6.5697 4.4290 45 1 4.1983 -8.0907 3.9336 46 1 3.1301 -7.6545 7.3925 47 1 4.7530 -7.4946 6.6793 48 1 4.7133 -9.9013 7.7240 49 1 5.8585 -12.7372 9.0606 50 1 2.3255 -5.6036 6.7278 51 1 3.8989 -5.1357 6.0399 52 1 2.0730 -3.8058 5.0296 53 1 1.2606 -5.3039 4.5133 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230374142.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:09 Heat of formation + Delta-G solvation = -86.402191 kcal Electronic energy + Delta-G solvation = -29938.761446 eV Core-core repulsion = 25844.345258 eV Total energy + Delta-G solvation = -4094.416188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.26615 -40.48599 -39.37788 -38.52397 -36.17615 -35.68827 -33.35077 -33.09620 -32.44694 -31.83218 -29.42891 -28.43052 -27.95196 -26.52245 -25.72163 -24.26729 -23.65102 -21.45232 -21.07181 -20.87560 -20.48793 -19.85534 -18.14159 -17.77646 -17.57885 -16.75572 -16.62993 -16.55109 -16.38684 -16.26979 -15.70646 -15.43625 -15.39262 -15.32588 -14.95565 -14.66753 -14.37041 -14.24801 -14.12446 -13.89620 -13.84306 -13.49217 -13.20469 -12.99846 -12.90975 -12.88149 -12.70673 -12.44304 -12.42927 -12.37213 -12.35373 -12.18272 -12.10220 -12.05547 -11.77144 -11.61813 -11.61027 -11.38569 -10.72229 -10.25826 -10.01766 -9.97119 -9.21651 -9.19185 -8.44873 -5.93281 1.37532 1.42654 1.56731 1.70326 2.07318 2.08241 2.29394 2.75222 3.06309 3.22216 3.39661 3.67688 3.85699 3.88445 3.96455 4.08472 4.17873 4.19380 4.26120 4.30555 4.33617 4.37526 4.45804 4.46555 4.53028 4.54578 4.56228 4.64031 4.66061 4.72520 4.78252 4.87174 4.92388 4.97779 4.99913 5.05150 5.07145 5.10456 5.13129 5.30347 5.34157 5.40520 5.42969 5.55934 5.89693 6.00380 6.09549 6.17178 6.22113 6.62792 6.65666 7.15153 7.35136 7.59089 8.14627 8.72860 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.039823 B = 0.001650 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.943088 B =16965.228868 C =17291.721832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 C -0.142 4.142 4 N -0.538 5.538 5 C 0.020 3.980 6 C 0.039 3.961 7 C 0.511 3.489 8 O -0.565 6.565 9 N -0.715 5.715 10 C 0.155 3.845 11 C -0.106 4.106 12 C 0.059 3.941 13 N -0.529 5.529 14 C 0.056 3.944 15 C 0.443 3.557 16 O -0.611 6.611 17 N -0.576 5.576 18 C -0.330 4.330 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.059 3.941 27 C -0.113 4.113 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.414 0.586 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.031 0.969 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.063 0.937 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.088 0.912 51 H 0.036 0.964 52 H 0.068 0.932 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 24.335 -14.803 29.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.034 4.034 3 C -0.199 4.199 4 N -0.262 5.262 5 C -0.128 4.128 6 C -0.092 4.092 7 C 0.298 3.702 8 O -0.443 6.443 9 N -0.368 5.368 10 C 0.049 3.951 11 C -0.144 4.144 12 C -0.070 4.070 13 N -0.254 5.254 14 C -0.075 4.075 15 C 0.231 3.769 16 O -0.497 6.497 17 N -0.214 5.214 18 C -0.460 4.460 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.069 4.069 27 C -0.152 4.152 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.142 0.858 39 H 0.101 0.899 40 H 0.251 0.749 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.082 0.918 46 H 0.128 0.872 47 H 0.081 0.919 48 H 0.229 0.771 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.055 0.945 52 H 0.087 0.913 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.524 24.339 -14.901 29.784 hybrid contribution 0.143 -1.002 0.602 1.178 sum -8.381 23.337 -14.299 28.624 Atomic orbital electron populations 1.22460 0.96502 1.02375 1.02929 1.21841 0.93482 0.95790 0.92249 1.21823 1.01261 0.94642 1.02199 1.61870 1.59677 1.01415 1.03233 1.22484 0.96873 1.00629 0.92786 1.22035 0.99673 0.89238 0.98276 1.21069 0.80952 0.82139 0.86051 1.90665 1.41838 1.66245 1.45581 1.45967 1.51695 1.07085 1.32044 1.20814 0.95349 0.92004 0.86901 1.21693 1.02158 0.93131 0.97449 1.22034 0.93385 1.00777 0.90772 1.61515 1.48559 1.10632 1.04726 1.21731 1.00141 0.90059 0.95555 1.20715 0.82470 0.88500 0.85263 1.90469 1.49249 1.82303 1.27643 1.41960 1.50422 1.06406 1.22591 1.19705 1.35308 0.83344 1.07629 0.90183 1.26030 0.95809 1.04314 0.95205 1.69682 1.37082 1.36673 1.12892 0.84870 0.78215 0.76998 0.78244 1.19696 1.19753 1.19717 1.22119 0.99709 0.86447 0.98622 1.21835 0.99518 0.99534 0.94274 0.90847 0.92239 0.92596 0.89110 0.92952 0.90698 0.92895 0.92125 0.91061 0.94716 0.85845 0.89866 0.74946 0.91443 0.89819 0.90533 0.95098 0.91762 0.87153 0.91895 0.77144 0.91403 0.89377 0.94534 0.91290 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.44 71.98 0.61 -0.93 16 2 C 0.07 0.81 2.92 44.92 0.13 0.94 16 3 C -0.14 -1.53 9.12 71.98 0.66 -0.87 16 4 N -0.54 -8.60 4.45 -901.60 -4.01 -12.61 16 5 C 0.02 0.34 8.33 127.69 1.06 1.41 16 6 C 0.04 0.50 5.02 85.56 0.43 0.93 16 7 C 0.51 10.16 7.52 87.66 0.66 10.82 16 8 O -0.57 -16.23 13.97 -3.02 -0.04 -16.27 16 9 N -0.72 -12.20 5.08 -442.15 -2.25 -14.44 16 10 C 0.15 3.41 2.52 45.07 0.11 3.53 16 11 C -0.11 -2.54 5.57 30.65 0.17 -2.37 16 12 C 0.06 1.85 5.12 86.33 0.44 2.29 16 13 N -0.53 -17.01 4.35 -900.94 -3.92 -20.93 16 14 C 0.06 1.97 5.45 85.56 0.47 2.44 16 15 C 0.44 21.02 7.31 87.66 0.64 21.66 16 16 O -0.61 -33.19 14.29 -3.07 -0.04 -33.23 16 17 N -0.58 -29.61 5.29 -306.98 -1.62 -31.23 16 18 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 21 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 22 Si 0.99 42.96 29.55 68.60 2.03 44.99 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 C 0.06 1.49 5.46 86.33 0.47 1.96 16 27 C -0.11 -2.56 5.68 30.65 0.17 -2.38 16 28 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.45 6.91 -2.39 -0.02 0.44 16 30 H 0.06 0.54 6.42 -2.39 -0.02 0.53 16 31 H 0.09 0.84 7.93 -2.39 -0.02 0.82 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.61 6.47 -2.38 -0.02 0.59 16 35 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 36 H 0.07 1.13 6.30 -2.38 -0.02 1.12 16 37 H 0.03 0.49 6.46 -2.39 -0.02 0.48 16 38 H 0.12 1.09 7.93 -2.39 -0.02 1.07 16 39 H 0.08 0.79 7.06 -2.38 -0.02 0.77 16 40 H 0.41 4.67 8.61 -92.71 -0.80 3.87 16 41 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 42 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 2.53 6.06 -2.39 -0.01 2.52 16 46 H 0.11 3.42 7.98 -2.39 -0.02 3.40 16 47 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 48 H 0.39 19.40 7.90 -92.71 -0.73 18.67 16 49 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.09 2.02 8.01 -2.39 -0.02 2.00 16 51 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 52 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 53 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -71.90 409.33 -2.88 -74.78 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.61 Total: 37.41 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 7.31 Total: 21.22 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -11.51 Total: -128.90 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.09 Total: -49.50 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.90 -2.88 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230374142.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.623 kcal (2) G-P(sol) polarization free energy of solvation -71.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds