Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 H 1.09004 * 109.47178 * 54.02822 * 3 2 1 5 5 C 1.50695 * 109.47163 * 174.02862 * 3 2 1 6 6 O 1.21285 * 120.00411 * 119.72312 * 5 3 2 7 7 N 1.34781 * 120.00125 * 300.00198 * 5 3 2 8 8 C 1.46494 * 119.99846 * 359.71824 * 7 5 3 9 9 C 1.46502 * 120.00001 * 179.72207 * 7 5 3 10 10 C 1.53009 * 109.46874 * 90.00145 * 9 7 5 11 11 H 1.08997 * 112.74229 * 284.22422 * 10 9 7 12 12 C 1.53507 * 113.47314 * 153.38196 * 10 9 7 13 13 C 1.53518 * 83.57177 * 219.20430 * 12 10 9 14 14 N 1.47474 * 87.93099 * 26.02689 * 13 12 10 15 15 C 1.46906 * 110.99839 * 221.29934 * 14 13 12 16 16 C 1.50707 * 109.46647 * 285.96661 * 15 14 13 17 17 O 1.21291 * 120.00273 * 0.02562 * 16 15 14 18 18 N 1.34773 * 119.99545 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99744 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99856 * 0.02562 * 19 18 16 21 21 C 1.38951 * 120.00179 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00122 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47238 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46934 * 120.00860 * 23 21 19 26 26 H 1.48500 * 109.47190 * 240.00147 * 23 21 19 27 27 N 1.46899 * 109.47195 * 294.02864 * 3 2 1 28 28 C 1.46903 * 111.00012 * 319.13434 * 27 3 2 29 29 C 1.46906 * 110.99663 * 83.08875 * 27 3 2 30 30 H 1.08997 * 109.47480 * 319.18730 * 1 2 3 31 31 H 1.09001 * 109.46667 * 79.18207 * 1 2 3 32 32 H 1.09000 * 109.47160 * 199.18312 * 1 2 3 33 33 H 1.08991 * 109.47423 * 240.00002 * 2 1 3 34 34 H 1.09000 * 109.46558 * 119.99183 * 2 1 3 35 35 H 1.09001 * 109.47116 * 90.00405 * 8 7 5 36 36 H 1.09000 * 109.47210 * 210.00014 * 8 7 5 37 37 H 1.09000 * 109.47687 * 330.00737 * 8 7 5 38 38 H 1.08996 * 109.47164 * 209.99756 * 9 7 5 39 39 H 1.08995 * 109.47413 * 329.99997 * 9 7 5 40 40 H 1.09001 * 114.17325 * 332.84656 * 12 10 9 41 41 H 1.09001 * 114.17472 * 105.56308 * 12 10 9 42 42 H 1.08992 * 113.47720 * 271.25689 * 13 12 10 43 43 H 1.09001 * 113.52748 * 140.80264 * 13 12 10 44 44 H 1.09000 * 109.47495 * 45.96611 * 15 14 13 45 45 H 1.08994 * 109.47306 * 165.97141 * 15 14 13 46 46 H 0.96996 * 120.00559 * 0.02562 * 18 16 15 47 47 H 0.96994 * 120.00359 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.46586 * 59.99681 * 28 27 3 49 49 H 1.08995 * 109.46909 * 179.97438 * 28 27 3 50 50 H 1.09002 * 109.46773 * 300.00267 * 28 27 3 51 51 H 1.08988 * 109.47301 * 51.31444 * 29 27 3 52 52 H 1.09000 * 109.46603 * 171.31536 * 29 27 3 53 53 H 1.08998 * 109.46818 * 291.30713 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5919 1.9863 0.8317 5 6 3.5396 1.4451 0.1478 6 8 4.2335 1.9350 -0.7179 7 7 4.1102 0.8981 1.2395 8 6 3.2722 0.3064 2.2853 9 6 5.5684 0.8952 1.3803 10 6 6.0137 2.1694 2.1009 11 1 5.9846 3.0491 1.4581 12 6 7.3369 2.0104 2.8627 13 6 6.6356 2.8796 3.9160 14 7 5.3502 2.3706 3.4026 15 6 4.3520 3.4455 3.3240 16 6 3.8739 3.7894 4.7112 17 8 4.3211 3.1976 5.6709 18 7 2.9502 4.7552 4.8855 19 6 2.5149 5.0677 6.1474 20 1 2.9125 4.5402 7.0018 21 6 1.5629 6.0637 6.3272 22 7 1.0795 6.7060 5.2876 23 14 0.9704 6.4900 8.0467 24 1 1.6649 5.6289 9.0372 25 1 1.2701 7.9157 8.3343 26 1 -0.4947 6.2647 8.1354 27 7 1.6715 2.0922 -1.2650 28 6 1.8535 1.1768 -2.3994 29 6 0.2940 2.6002 -1.2141 30 1 -0.3634 0.7777 0.6716 31 1 -0.3633 0.1929 -1.0094 32 1 -0.3633 -0.9706 0.3377 33 1 1.8934 -0.5138 -0.8899 34 1 1.8932 -0.5137 0.8901 35 1 3.1087 -0.7488 2.0663 36 1 3.7711 0.4043 3.2494 37 1 2.3131 0.8233 2.3183 38 1 5.8759 0.0242 1.9590 39 1 6.0287 0.8564 0.3931 40 1 7.5436 0.9917 3.1905 41 1 8.1890 2.4916 2.3825 42 1 6.7734 3.9492 3.7579 43 1 6.8451 2.5747 4.9413 44 1 4.8018 4.3264 2.8659 45 1 3.5073 3.1135 2.7205 46 1 2.5928 5.2287 4.1181 47 1 0.4147 7.4010 5.4130 48 1 1.2239 0.2977 -2.2615 49 1 1.5730 1.6829 -3.3232 50 1 2.8981 0.8705 -2.4551 51 1 0.1637 3.2080 -0.3188 52 1 0.0981 3.2078 -2.0975 53 1 -0.4018 1.7616 -1.1884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264372344.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = 0.804775 kcal Electronic energy + Delta-G solvation = -32158.640600 eV Core-core repulsion = 28068.005990 eV Total energy + Delta-G solvation = -4090.634610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.75101 -39.84489 -37.85713 -37.48388 -35.41346 -33.91063 -32.48935 -31.35664 -30.69679 -29.45115 -28.03094 -27.69483 -26.29070 -25.75984 -23.68650 -23.49999 -22.91195 -21.17214 -19.65890 -19.23869 -18.94850 -17.89256 -17.17218 -16.55840 -16.16412 -15.94581 -15.78443 -15.45459 -15.12622 -14.71578 -14.53310 -14.26066 -14.03072 -13.76757 -13.71243 -13.37174 -13.35572 -12.81452 -12.65394 -12.57622 -12.40686 -12.25115 -12.13502 -12.01674 -11.83937 -11.73656 -11.64176 -11.52492 -11.43971 -11.34504 -11.27590 -11.08010 -10.87098 -10.73518 -10.41279 -10.35036 -10.22331 -9.54409 -9.51343 -8.88382 -8.37652 -8.24964 -8.21790 -7.96454 -6.41812 -3.82817 2.72410 2.94360 3.15275 3.25935 3.32934 3.87825 3.90577 4.07922 4.27917 4.41148 4.59846 4.63890 4.72520 4.91655 5.03020 5.05430 5.11572 5.12778 5.21279 5.23709 5.25623 5.31259 5.37048 5.39852 5.46990 5.49248 5.54110 5.59124 5.61190 5.69167 5.75808 5.79026 5.80605 5.84439 5.85492 5.87979 5.91236 5.98046 6.06274 6.13844 6.28283 6.34854 6.52710 6.66847 6.83681 6.93495 7.28971 7.48777 7.54727 8.05692 8.31449 8.61215 9.17810 9.54286 10.05999 10.75955 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.003728 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.391148 B = 7509.418875 C = 9539.981258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.168 4.168 3 C 0.067 3.933 4 H 0.106 0.894 5 C 0.519 3.481 6 O -0.525 6.525 7 N -0.606 5.606 8 C 0.075 3.925 9 C 0.139 3.861 10 C 0.005 3.995 11 H 0.078 0.922 12 C -0.140 4.140 13 C 0.013 3.987 14 N -0.433 5.433 15 C 0.015 3.985 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 N -0.519 5.519 28 C 0.022 3.978 29 C 0.009 3.991 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.031 0.969 49 H 0.065 0.935 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.032 -13.309 -13.509 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.207 4.207 3 C -0.046 4.046 4 H 0.124 0.876 5 C 0.306 3.694 6 O -0.400 6.400 7 N -0.340 5.340 8 C -0.068 4.068 9 C 0.016 3.984 10 C -0.106 4.106 11 H 0.096 0.904 12 C -0.178 4.178 13 C -0.116 4.116 14 N -0.156 5.156 15 C -0.117 4.117 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 N -0.242 5.242 28 C -0.126 4.126 29 C -0.138 4.138 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.101 0.899 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.091 0.909 51 H 0.088 0.912 52 H 0.087 0.913 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.477 -13.411 -13.064 18.885 hybrid contribution -1.025 0.876 0.148 1.357 sum 1.452 -12.535 -12.916 18.057 Atomic orbital electron populations 1.22062 0.95000 1.02317 1.01962 1.22465 0.97054 0.96759 1.04389 1.21755 0.93160 0.95054 0.94589 0.87620 1.20494 0.90065 0.77582 0.81307 1.90660 1.64107 1.44318 1.40917 1.47706 1.06892 1.59014 1.20377 1.22045 0.95576 0.96782 0.92409 1.21399 0.79635 0.96907 1.00478 1.23907 0.94464 0.99109 0.93134 0.90384 1.23213 0.95734 1.01458 0.97397 1.23563 0.89848 0.97691 1.00525 1.68724 1.04693 1.32757 1.09421 1.22416 0.97697 0.94122 0.97463 1.19690 0.83909 0.83717 0.89635 1.90516 1.59869 1.54180 1.41673 1.41889 1.36305 1.32580 1.09438 1.19732 1.20159 1.17484 0.85373 0.87925 1.25251 0.96978 0.96430 0.99249 1.69622 1.30186 1.24686 1.29766 0.85824 0.78394 0.78298 0.81978 1.19237 1.20776 1.20754 1.61757 1.23750 1.37042 1.01625 1.22491 1.02100 0.94651 0.93345 1.22795 0.88043 0.99875 1.03135 0.91960 0.92174 0.92328 0.90730 0.89531 0.92932 0.88817 0.91391 0.90076 0.89920 0.88952 0.90879 0.91930 0.89136 0.93132 0.89887 0.77578 0.91938 0.95058 0.91618 0.90916 0.91157 0.91324 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.18 37.16 0.30 -0.95 16 2 C -0.17 -1.53 4.53 -26.73 -0.12 -1.65 16 3 C 0.07 0.78 1.51 -68.87 -0.10 0.68 16 4 H 0.11 1.29 6.82 -51.93 -0.35 0.93 16 5 C 0.52 7.18 6.88 -10.99 -0.08 7.11 16 6 O -0.52 -8.94 14.98 5.55 0.08 -8.86 16 7 N -0.61 -7.45 2.70 -181.57 -0.49 -7.94 16 8 C 0.07 0.83 8.31 59.84 0.50 1.32 16 9 C 0.14 1.64 5.56 -4.04 -0.02 1.62 16 10 C 0.00 0.06 3.37 -71.44 -0.24 -0.18 16 11 H 0.08 1.15 7.77 -51.93 -0.40 0.75 16 12 C -0.14 -1.61 8.00 -26.20 -0.21 -1.82 16 13 C 0.01 0.19 6.71 -7.56 -0.05 0.14 16 14 N -0.43 -6.99 4.60 -237.97 -1.09 -8.09 16 15 C 0.02 0.28 5.31 -4.97 -0.03 0.25 16 16 C 0.45 10.49 7.62 -10.98 -0.08 10.41 16 17 O -0.58 -15.42 15.33 5.55 0.09 -15.34 16 18 N -0.57 -14.38 5.29 -10.96 -0.06 -14.43 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 N -0.52 -6.29 4.47 -244.59 -1.09 -7.39 16 28 C 0.02 0.23 8.24 60.07 0.49 0.73 16 29 C 0.01 0.09 8.87 60.07 0.53 0.63 16 30 H 0.06 0.53 7.56 -51.93 -0.39 0.13 16 31 H 0.06 0.47 5.12 -51.93 -0.27 0.20 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.69 5.98 -51.93 -0.31 0.38 16 34 H 0.09 0.74 4.45 -51.93 -0.23 0.51 16 35 H 0.05 0.46 6.84 -51.93 -0.35 0.11 16 36 H 0.09 1.22 7.21 -51.93 -0.37 0.85 16 37 H 0.07 0.75 6.08 -51.93 -0.32 0.43 16 38 H 0.08 0.84 7.80 -51.93 -0.41 0.43 16 39 H 0.08 0.99 7.42 -51.93 -0.39 0.61 16 40 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 43 H 0.09 1.53 8.13 -51.93 -0.42 1.10 16 44 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 45 H 0.08 1.47 7.85 -51.93 -0.41 1.07 16 46 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.03 0.28 5.03 -51.93 -0.26 0.02 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 0.88 7.06 -51.93 -0.37 0.52 16 51 H 0.07 0.75 7.84 -51.94 -0.41 0.34 16 52 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 53 H 0.04 0.36 4.47 -51.93 -0.23 0.13 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -32.59 402.12 -8.77 -41.36 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -8.62 Total: 12.13 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 0.65 Total: 10.37 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -2.01 Total: -61.67 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.59 -8.77 -41.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264372344.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds