Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46746 * 2 1 4 4 H 1.09002 * 109.46925 * 57.11418 * 3 2 1 5 5 C 1.50708 * 109.46996 * 177.11002 * 3 2 1 6 6 O 1.21274 * 119.99936 * 99.70883 * 5 3 2 7 7 N 1.34774 * 119.99623 * 279.71273 * 5 3 2 8 8 C 1.46502 * 119.99507 * 179.97438 * 7 5 3 9 9 H 1.08994 * 110.29103 * 327.12468 * 8 7 5 10 10 C 1.54265 * 110.41165 * 89.31473 * 8 7 5 11 11 C 1.54378 * 105.06424 * 118.93681 * 10 8 7 12 12 N 1.48562 * 104.59254 * 23.85522 * 11 10 8 13 13 C 1.46897 * 110.99704 * 200.95808 * 12 11 10 14 14 C 1.50694 * 109.47315 * 285.41576 * 13 12 11 15 15 O 1.21293 * 120.00088 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00268 * 179.97438 * 14 13 12 17 17 C 1.37098 * 120.00170 * 180.02562 * 16 14 13 18 18 H 1.07997 * 120.00281 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99978 * 180.02562 * 17 16 14 20 20 N 1.31407 * 119.99812 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00055 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47011 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47110 * 119.99716 * 21 19 17 24 24 H 1.48492 * 109.47021 * 239.99847 * 21 19 17 25 25 C 1.48560 * 104.22014 * 320.51602 * 12 11 10 26 26 H 1.09002 * 110.41205 * 280.70278 * 25 12 11 27 27 C 1.53003 * 110.51085 * 158.31883 * 25 12 11 28 28 N 1.46893 * 109.47382 * 297.10703 * 3 2 1 29 29 C 1.46905 * 111.00202 * 184.53616 * 28 3 2 30 30 C 1.46899 * 111.00484 * 308.49616 * 28 3 2 31 31 H 1.09005 * 109.46849 * 175.79552 * 1 2 3 32 32 H 1.08997 * 109.46875 * 295.78582 * 1 2 3 33 33 H 1.08994 * 109.47526 * 55.78948 * 1 2 3 34 34 H 1.09003 * 109.47103 * 240.00424 * 2 1 3 35 35 H 1.08997 * 109.47288 * 120.00003 * 2 1 3 36 36 H 0.97001 * 120.00610 * 359.97438 * 7 5 3 37 37 H 1.09001 * 110.32135 * 237.83405 * 10 8 7 38 38 H 1.09002 * 110.32019 * 359.93535 * 10 8 7 39 39 H 1.08999 * 110.40805 * 142.62442 * 11 10 8 40 40 H 1.08999 * 110.41070 * 264.95604 * 11 10 8 41 41 H 1.09000 * 109.47255 * 45.42198 * 13 12 11 42 42 H 1.09001 * 109.47046 * 165.41730 * 13 12 11 43 43 H 0.96999 * 119.99695 * 0.02562 * 16 14 13 44 44 H 0.97001 * 119.99870 * 179.97438 * 20 19 17 45 45 H 1.09007 * 109.46821 * 303.11679 * 27 25 12 46 46 H 1.08998 * 109.47528 * 63.11524 * 27 25 12 47 47 H 1.08997 * 109.47177 * 183.11804 * 27 25 12 48 48 H 1.08995 * 109.46442 * 66.35540 * 29 28 3 49 49 H 1.08998 * 109.47195 * 186.35263 * 29 28 3 50 50 H 1.08996 * 109.46984 * 306.35438 * 29 28 3 51 51 H 1.09008 * 109.46980 * 66.66833 * 30 28 3 52 52 H 1.08996 * 109.47271 * 186.67404 * 30 28 3 53 53 H 1.09003 * 109.46832 * 306.67518 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6349 1.9711 0.8630 5 6 3.5453 1.4432 0.0716 6 8 4.2002 1.6032 -0.9364 7 7 4.1635 1.2660 1.2560 8 6 5.6269 1.2661 1.3255 9 1 6.0488 0.8480 0.4116 10 6 6.1546 2.6976 1.5533 11 6 6.9075 2.6382 2.8998 12 7 7.2876 1.2103 3.0534 13 6 7.5595 0.8863 4.4601 14 6 8.8927 1.4638 4.8600 15 8 9.5515 2.0846 4.0527 16 7 9.3527 1.2913 6.1151 17 6 10.5654 1.8171 6.4790 18 1 11.1520 2.3699 5.7602 19 6 11.0398 1.6388 7.7729 20 7 10.3259 0.9666 8.6477 21 14 12.6919 2.3559 8.2690 22 1 13.2928 3.0631 7.1097 23 1 12.5001 3.3129 9.3881 24 1 13.5962 1.2611 8.7034 25 6 6.1054 0.4621 2.5535 26 1 5.3258 0.4307 3.3147 27 6 6.5039 -0.9562 2.1406 28 7 1.6082 2.1146 -1.2328 29 6 2.1698 3.4693 -1.3183 30 6 1.9637 1.3215 -2.4171 31 1 -0.3633 -1.0250 -0.0753 32 1 -0.3633 0.4470 0.9253 33 1 -0.3634 0.5777 -0.8498 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.6397 1.1383 2.0624 37 1 6.8355 2.9822 0.7511 38 1 5.3248 3.4020 1.6125 39 1 7.7973 3.2668 2.8658 40 1 6.2540 2.9493 3.7148 41 1 6.7764 1.3106 5.0886 42 1 7.5798 -0.1962 4.5863 43 1 8.8257 0.7951 6.7608 44 1 10.6573 0.8419 9.5507 45 1 7.2920 -0.9079 1.3891 46 1 6.8664 -1.5003 3.0128 47 1 5.6373 -1.4708 1.7257 48 1 3.2525 3.4074 -1.4279 49 1 1.7462 3.9845 -2.1805 50 1 1.9274 4.0211 -0.4102 51 1 1.3868 0.3966 -2.4216 52 1 1.7406 1.8934 -3.3177 53 1 3.0276 1.0858 -2.3905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264719270.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -79.910143 kcal Electronic energy + Delta-G solvation = -30792.808849 eV Core-core repulsion = 26698.674177 eV Total energy + Delta-G solvation = -4094.134671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73562 -40.66003 -39.46692 -37.71277 -36.02574 -35.50360 -33.87057 -33.29111 -32.44757 -32.06725 -29.04285 -28.32425 -27.88410 -26.22092 -25.88818 -24.16702 -23.06159 -22.07978 -21.58068 -20.93939 -20.58878 -19.87077 -18.32983 -17.95248 -17.55936 -16.90960 -16.56932 -16.48475 -16.23178 -16.13572 -15.80982 -15.68070 -15.49944 -15.21551 -15.03888 -14.53542 -14.46841 -14.02532 -13.88131 -13.69836 -13.48173 -13.34940 -13.13832 -12.95859 -12.89955 -12.80153 -12.73892 -12.63495 -12.51850 -12.43842 -12.38629 -12.30994 -12.13218 -12.08323 -11.87254 -11.72363 -11.62975 -11.49230 -11.23110 -10.35180 -10.09925 -10.00112 -9.41574 -9.15151 -8.46744 -5.94792 1.35688 1.40965 1.53154 1.54820 2.03349 2.06645 2.29202 2.82715 2.95364 3.19866 3.33391 3.39799 3.72046 3.76888 3.90473 4.00784 4.09081 4.12448 4.21630 4.26514 4.32215 4.39619 4.40657 4.51214 4.52740 4.60003 4.63615 4.66767 4.69339 4.78862 4.84165 4.87455 4.93361 4.96966 4.99670 5.04691 5.09089 5.14048 5.20034 5.28910 5.32863 5.41331 5.45186 5.56399 5.82337 5.90634 5.94096 5.96950 6.08511 6.51493 6.61595 7.14066 7.21624 7.57569 8.14270 8.70890 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.001982 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.325289 B =14123.951695 C =14506.136481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.068 3.932 4 H 0.125 0.875 5 C 0.487 3.513 6 O -0.572 6.572 7 N -0.705 5.705 8 C 0.156 3.844 9 H 0.080 0.920 10 C -0.122 4.122 11 C 0.041 3.959 12 N -0.503 5.503 13 C 0.050 3.950 14 C 0.442 3.558 15 O -0.618 6.618 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.276 1.276 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.059 3.941 26 H 0.082 0.918 27 C -0.133 4.133 28 N -0.512 5.512 29 C 0.011 3.989 30 C 0.005 3.995 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.415 0.585 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.047 0.953 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.025 0.975 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.064 0.936 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.260 -3.287 -13.306 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.044 4.044 4 H 0.142 0.858 5 C 0.274 3.726 6 O -0.451 6.451 7 N -0.358 5.358 8 C 0.050 3.950 9 H 0.098 0.902 10 C -0.161 4.161 11 C -0.087 4.087 12 N -0.228 5.228 13 C -0.082 4.082 14 C 0.229 3.771 15 O -0.503 6.503 16 N -0.213 5.213 17 C -0.460 4.460 18 H 0.094 0.906 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.049 4.049 26 H 0.100 0.900 27 C -0.191 4.191 28 N -0.234 5.234 29 C -0.137 4.137 30 C -0.143 4.143 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.252 0.748 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.043 0.957 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.096 0.904 52 H 0.083 0.917 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -23.361 -2.899 -14.651 27.727 hybrid contribution 1.169 0.405 1.451 1.907 sum -22.192 -2.494 -13.199 25.941 Atomic orbital electron populations 1.21637 0.93261 1.01937 1.02828 1.21590 0.98176 0.91964 1.03224 1.22161 0.87067 0.99021 0.96168 0.85768 1.22543 0.92522 0.74729 0.82808 1.90639 1.68385 1.50442 1.35649 1.46184 1.06204 1.72730 1.10703 1.21428 0.80478 0.94626 0.98514 0.90197 1.22614 0.99625 0.97371 0.96468 1.23013 0.98485 0.90167 0.96989 1.64991 1.35618 1.04922 1.17283 1.21908 0.93984 1.02369 0.89925 1.20790 0.89607 0.84462 0.82217 1.90496 1.61347 1.46470 1.52007 1.41921 1.19092 1.49599 1.10704 1.19650 0.96910 1.32683 0.96724 0.90597 1.25999 1.02888 0.97306 0.95103 1.69667 1.39677 1.41136 1.05601 0.84902 0.77417 0.78166 0.78043 1.20035 1.19539 1.19618 1.22904 0.91718 0.94698 0.95624 0.89975 1.21710 1.01886 0.93714 1.01782 1.62566 1.56322 1.02812 1.01714 1.22542 0.98096 0.89871 1.03180 1.22667 1.00737 0.98589 0.92327 0.92153 0.91833 0.92231 0.92097 0.89588 0.74790 0.92208 0.89855 0.92496 0.92918 0.90601 0.87084 0.76979 0.91332 0.93383 0.92002 0.90144 0.95664 0.90640 0.90790 0.90443 0.91689 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.72 71.98 0.70 -0.47 16 2 C -0.11 -1.12 4.91 30.59 0.15 -0.97 16 3 C 0.07 0.88 2.33 44.17 0.10 0.98 16 4 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 5 C 0.49 8.97 6.23 87.66 0.55 9.52 16 6 O -0.57 -15.34 11.64 -3.01 -0.04 -15.37 16 7 N -0.71 -10.87 5.03 -438.29 -2.20 -13.08 16 8 C 0.16 3.41 2.96 45.89 0.14 3.55 16 9 H 0.08 2.15 7.27 -2.39 -0.02 2.13 16 10 C -0.12 -3.09 6.79 31.49 0.21 -2.87 16 11 C 0.04 1.27 5.92 86.45 0.51 1.79 16 12 N -0.50 -15.79 4.66 -861.25 -4.02 -19.81 16 13 C 0.05 1.65 5.27 85.56 0.45 2.10 16 14 C 0.44 20.98 7.63 87.66 0.67 21.65 16 15 O -0.62 -34.64 14.80 -3.07 -0.05 -34.69 16 16 N -0.58 -29.36 5.29 -306.99 -1.62 -30.99 16 17 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 18 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 19 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 20 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 21 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 C 0.06 1.28 2.58 45.06 0.12 1.39 16 26 H 0.08 1.36 7.61 -2.39 -0.02 1.34 16 27 C -0.13 -2.74 9.32 71.98 0.67 -2.07 16 28 N -0.51 -8.02 4.37 -927.72 -4.05 -12.07 16 29 C 0.01 0.19 9.03 127.69 1.15 1.34 16 30 C 0.00 0.08 8.54 127.69 1.09 1.17 16 31 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.64 7.43 -2.39 -0.02 0.62 16 34 H 0.06 0.77 6.29 -2.39 -0.01 0.76 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.41 3.79 8.38 -92.71 -0.78 3.02 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 1.85 7.95 -2.39 -0.02 1.83 16 39 H 0.06 2.22 7.24 -2.39 -0.02 2.20 16 40 H 0.05 1.45 7.76 -2.39 -0.02 1.43 16 41 H 0.08 2.16 7.77 -2.39 -0.02 2.14 16 42 H 0.11 3.23 7.21 -2.39 -0.02 3.21 16 43 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 44 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 45 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.06 1.26 7.35 -2.39 -0.02 1.24 16 47 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.02 0.56 5.94 -2.39 -0.01 0.55 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 51 H 0.08 1.09 6.32 -2.38 -0.02 1.08 16 52 H 0.06 1.03 8.07 -2.39 -0.02 1.01 16 53 H 0.04 0.95 5.38 -2.39 -0.01 0.94 16 Total: -1.00 -72.80 410.68 -2.47 -75.27 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.59 Total: 35.68 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 7.79 Total: 18.88 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -11.61 Total: -124.94 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.08 Total: -50.06 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.80 -2.47 -75.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264719270.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.642 kcal (2) G-P(sol) polarization free energy of solvation -72.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds