Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47600 * 2 1 4 4 C 1.52990 * 109.47353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47398 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 C 1.52996 * 109.47059 * 179.72339 * 8 7 5 10 10 N 1.46896 * 109.47256 * 180.02562 * 9 8 7 11 11 C 1.46956 * 110.99700 * 293.79427 * 10 9 8 12 12 C 1.53057 * 109.36567 * 176.81222 * 11 10 9 13 13 N 1.46954 * 109.36119 * 58.40464 * 12 11 10 14 14 C 1.46910 * 110.99727 * 176.81619 * 13 12 11 15 15 C 1.50700 * 109.46852 * 293.79645 * 14 13 12 16 16 O 1.21298 * 119.99857 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99975 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99676 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00708 * 0.02562 * 18 17 15 20 20 C 1.38950 * 119.99714 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99910 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46917 * 90.00075 * 22 20 18 24 24 H 1.48501 * 109.46839 * 209.99729 * 22 20 18 25 25 H 1.48489 * 109.47161 * 329.99749 * 22 20 18 26 26 C 1.46955 * 110.88206 * 300.67565 * 13 12 11 27 27 C 1.46961 * 111.00124 * 170.00033 * 10 9 8 28 28 H 1.09007 * 109.47500 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47382 * 300.00476 * 1 2 3 30 30 H 1.09005 * 109.46800 * 60.00677 * 1 2 3 31 31 H 1.08999 * 109.46950 * 239.99208 * 2 1 3 32 32 H 1.09003 * 109.46788 * 120.00282 * 2 1 3 33 33 H 1.08998 * 109.47142 * 59.99377 * 3 2 1 34 34 H 1.09011 * 109.46657 * 299.99934 * 3 2 1 35 35 H 1.08998 * 109.47508 * 59.99597 * 4 3 2 36 36 H 1.09002 * 109.47337 * 299.99883 * 4 3 2 37 37 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 38 38 H 1.09004 * 109.46963 * 299.72135 * 8 7 5 39 39 H 1.08994 * 109.47567 * 59.72287 * 8 7 5 40 40 H 1.09004 * 109.47066 * 299.99732 * 9 8 7 41 41 H 1.09000 * 109.47665 * 59.99541 * 9 8 7 42 42 H 1.08999 * 109.49195 * 296.77993 * 11 10 9 43 43 H 1.08994 * 109.48776 * 56.84829 * 11 10 9 44 44 H 1.09001 * 109.48449 * 298.43650 * 12 11 10 45 45 H 1.09000 * 109.48760 * 178.37211 * 12 11 10 46 46 H 1.08995 * 109.47072 * 53.79775 * 14 13 12 47 47 H 1.09001 * 109.46751 * 173.80075 * 14 13 12 48 48 H 0.96994 * 119.99844 * 359.97438 * 17 15 14 49 49 H 0.96996 * 120.00396 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.49196 * 299.35935 * 26 13 12 51 51 H 1.09000 * 109.50922 * 179.29984 * 26 13 12 52 52 H 1.09000 * 109.48982 * 303.14979 * 27 10 9 53 53 H 1.09000 * 109.48854 * 63.21719 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8631 -0.0013 6 8 3.2843 3.7850 -0.0017 7 7 5.3975 3.1094 -0.0024 8 6 5.8859 4.4905 0.0031 9 6 7.4158 4.4905 0.0074 10 7 7.9056 5.8754 0.0136 11 6 7.5628 6.5607 -1.2404 12 6 8.0190 8.0196 -1.1626 13 7 9.4676 8.0649 -0.9201 14 6 9.9574 9.4499 -0.9139 15 6 9.8093 10.0412 -2.2922 16 8 9.3422 9.3742 -3.1912 17 7 10.1967 11.3106 -2.5260 18 6 10.0624 11.8483 -3.7800 19 1 9.6458 11.2548 -4.5803 20 6 10.4614 13.1573 -4.0210 21 7 10.9670 13.8801 -3.0469 22 14 10.2778 13.8901 -5.7295 23 1 8.9463 14.5365 -5.8503 24 1 11.3414 14.9026 -5.9506 25 1 10.3998 12.8141 -6.7454 26 6 9.8105 7.3796 0.3339 27 6 9.3543 5.9207 0.2561 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9562 -0.8901 35 1 3.9330 0.9286 -0.8908 36 1 3.9337 0.9284 0.8891 37 1 6.0278 2.3720 -0.0025 38 1 5.5251 5.0070 -0.8864 39 1 5.5201 5.0018 0.8935 40 1 7.7766 3.9740 0.8969 41 1 7.7818 3.9793 -0.8830 42 1 8.0636 6.0671 -2.0733 43 1 6.4840 6.5246 -1.3914 44 1 7.4978 8.5205 -0.3467 45 1 7.7917 8.5223 -2.1026 46 1 9.3772 10.0373 -0.2023 47 1 11.0081 9.4624 -0.6242 48 1 10.5706 11.8438 -1.8072 49 1 11.2452 14.7939 -3.2151 50 1 9.3097 7.8732 1.1668 51 1 10.8893 7.4157 0.4852 52 1 9.5816 5.4180 1.1961 53 1 9.8754 5.4198 -0.5598 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265255780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -102.702246 kcal Electronic energy + Delta-G solvation = -29010.310121 eV Core-core repulsion = 24915.187110 eV Total energy + Delta-G solvation = -4095.123011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.94717 -40.62868 -39.56305 -37.15097 -36.23799 -35.90866 -35.26102 -33.28156 -32.03205 -31.78125 -30.76782 -28.80013 -26.93193 -25.62122 -24.87387 -24.52093 -22.69810 -22.03288 -21.29267 -21.08735 -20.72334 -19.87266 -17.99154 -17.81647 -17.37899 -17.11896 -16.77543 -16.52958 -16.50977 -16.14522 -15.83662 -15.71050 -15.50589 -15.28159 -15.16907 -14.84194 -14.67317 -14.52528 -14.31006 -13.90547 -13.64287 -13.49960 -13.23915 -13.17268 -12.99866 -12.82574 -12.72572 -12.42514 -12.32080 -12.23629 -12.18025 -12.12289 -12.07556 -11.88316 -11.86280 -11.69025 -11.44326 -11.43822 -10.90461 -10.27202 -10.10978 -9.99726 -9.43887 -9.19035 -8.46304 -5.94842 1.37414 1.41053 1.53744 1.65764 2.05652 2.08731 2.28313 2.76572 3.00288 3.20516 3.38567 3.75515 3.83616 3.89681 3.95110 4.03605 4.07912 4.14066 4.22935 4.33390 4.36594 4.38738 4.44401 4.48396 4.48968 4.51902 4.60287 4.63692 4.65668 4.77295 4.82195 4.89720 4.92983 4.94055 4.95592 5.02732 5.07021 5.10814 5.11864 5.28616 5.39607 5.40189 5.41061 5.51818 5.82842 5.90736 6.01246 6.13239 6.24015 6.56669 6.61334 7.13486 7.28642 7.57063 8.13106 8.71157 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.001564 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.277652 B =17900.102228 C =19072.230889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.130 4.130 5 C 0.503 3.497 6 O -0.594 6.594 7 N -0.717 5.717 8 C 0.126 3.874 9 C 0.055 3.945 10 N -0.543 5.543 11 C 0.069 3.931 12 C 0.059 3.941 13 N -0.534 5.534 14 C 0.059 3.941 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.054 3.946 27 C 0.065 3.935 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.419 0.581 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.031 0.969 43 H 0.079 0.921 44 H 0.032 0.968 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.113 0.887 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.044 0.956 51 H 0.097 0.903 52 H 0.111 0.889 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -28.199 12.798 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.170 4.170 5 C 0.291 3.709 6 O -0.474 6.474 7 N -0.371 5.371 8 C 0.001 3.999 9 C -0.073 4.073 10 N -0.269 5.269 11 C -0.059 4.059 12 C -0.069 4.069 13 N -0.260 5.260 14 C -0.072 4.072 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.074 4.074 27 C -0.063 4.063 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.131 0.869 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.062 0.938 51 H 0.115 0.885 52 H 0.129 0.871 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.472 -27.791 12.211 31.799 hybrid contribution 0.306 1.141 -0.700 1.373 sum -9.166 -26.650 11.511 30.443 Atomic orbital electron populations 1.21803 0.96163 1.02022 1.01489 1.21514 0.95801 0.95183 1.03119 1.21355 0.93758 0.97571 1.01797 1.21734 0.97136 0.91244 1.06870 1.21534 0.81929 0.92941 0.74461 1.90716 1.56645 1.48570 1.51486 1.45835 1.07297 1.08859 1.75068 1.21119 0.94212 0.83234 1.01342 1.22177 0.93009 0.89083 1.03033 1.62076 1.15215 1.15557 1.34007 1.22027 1.00166 0.93271 0.90446 1.22139 0.87278 0.96935 1.00567 1.61745 1.14457 1.14262 1.35510 1.21715 1.02821 0.89606 0.93102 1.20789 0.82758 0.82173 0.91462 1.90458 1.50424 1.61368 1.47866 1.41925 1.56182 1.11601 1.11415 1.19653 1.40941 0.96968 0.88690 0.90395 1.26007 0.96016 0.96036 1.03074 1.69669 1.42322 1.10469 1.33690 0.84948 0.78306 0.77871 0.77329 1.19765 1.19441 1.19831 1.22331 1.01649 0.94293 0.89120 1.22194 0.86053 0.95831 1.02195 0.91708 0.93200 0.93399 0.90875 0.90608 0.93052 0.93389 0.86406 0.85987 0.74404 0.93632 0.92243 0.87450 0.93344 0.95044 0.90228 0.95022 0.91709 0.91867 0.86879 0.77049 0.91322 0.93758 0.88502 0.87061 0.94345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.91 71.98 0.71 -0.84 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.81 16 3 C -0.11 -1.41 4.50 30.59 0.14 -1.27 16 4 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 5 C 0.50 9.12 7.83 87.66 0.69 9.81 16 6 O -0.59 -17.46 15.98 -3.04 -0.05 -17.51 16 7 N -0.72 -9.65 5.56 -463.07 -2.57 -12.23 16 8 C 0.13 2.33 5.61 86.38 0.48 2.81 16 9 C 0.05 0.82 5.07 86.30 0.44 1.26 16 10 N -0.54 -11.68 4.71 -895.70 -4.22 -15.90 16 11 C 0.07 1.95 5.41 86.31 0.47 2.41 16 12 C 0.06 2.04 5.26 86.31 0.45 2.49 16 13 N -0.53 -17.70 4.45 -900.25 -4.00 -21.70 16 14 C 0.06 2.09 5.45 85.56 0.47 2.55 16 15 C 0.44 21.39 7.48 87.66 0.66 22.04 16 16 O -0.62 -34.44 13.92 -3.08 -0.04 -34.49 16 17 N -0.57 -29.92 5.29 -306.98 -1.62 -31.54 16 18 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -50.17 13.05 21.66 0.28 -49.88 16 22 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.05 1.25 5.61 86.31 0.48 1.74 16 27 C 0.06 1.25 5.61 86.31 0.48 1.74 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.53 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 34 H 0.05 0.84 8.10 -2.38 -0.02 0.82 16 35 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.42 2.33 8.47 -92.71 -0.79 1.54 16 38 H 0.05 1.08 6.50 -2.38 -0.02 1.07 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.11 1.06 8.03 -2.38 -0.02 1.04 16 41 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 2.18 6.34 -2.39 -0.02 2.17 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 2.79 5.85 -2.39 -0.01 2.78 16 46 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 47 H 0.11 3.46 8.03 -2.39 -0.02 3.44 16 48 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 49 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.10 1.92 8.07 -2.39 -0.02 1.90 16 52 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 53 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -77.15 421.23 -3.72 -80.87 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.62 Total: 32.44 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 7.10 Total: 24.38 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -12.13 Total: -131.25 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.15 -3.72 -80.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265255780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -77.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds