Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47329 * 2 1 4 4 C 1.53001 * 109.47099 * 119.99229 * 2 1 3 5 5 N 1.46498 * 109.47203 * 175.00068 * 4 2 1 6 6 C 1.34785 * 119.99915 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99766 * 180.27886 * 6 5 4 9 9 N 1.46892 * 109.46817 * 173.45745 * 8 6 5 10 10 C 1.46849 * 110.99933 * 169.39897 * 9 8 6 11 11 C 1.53034 * 109.52467 * 185.83725 * 10 9 8 12 12 C 1.53122 * 109.28160 * 300.82164 * 11 10 9 13 13 C 1.53000 * 109.57436 * 177.59206 * 12 11 10 14 14 C 1.53114 * 109.15966 * 57.65062 * 12 11 10 15 15 C 1.46846 * 111.00437 * 293.60602 * 9 8 6 16 16 N 1.46895 * 109.47763 * 239.99350 * 2 1 3 17 17 C 1.46902 * 111.00010 * 84.99864 * 16 2 1 18 18 C 1.50700 * 109.47271 * 180.02562 * 17 16 2 19 19 O 1.21291 * 119.99873 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37093 * 119.99990 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99847 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31417 * 120.00193 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00293 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46733 * 59.99657 * 25 23 21 27 27 H 1.48500 * 109.47272 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46695 * 300.00205 * 25 23 21 29 29 H 1.08996 * 109.47167 * 60.00698 * 1 2 3 30 30 H 1.09007 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47672 * 300.00733 * 1 2 3 32 32 H 1.08997 * 109.47273 * 54.99827 * 4 2 1 33 33 H 1.09009 * 109.47228 * 295.00260 * 4 2 1 34 34 H 0.96995 * 120.00172 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46572 * 293.45373 * 8 6 5 36 36 H 1.08996 * 109.47088 * 53.45458 * 8 6 5 37 37 H 1.08999 * 109.46036 * 305.85611 * 10 9 8 38 38 H 1.08997 * 109.46507 * 65.82158 * 10 9 8 39 39 H 1.09002 * 109.50874 * 180.87527 * 11 10 9 40 40 H 1.09006 * 109.50306 * 60.76217 * 11 10 9 41 41 H 1.08996 * 109.51674 * 297.74562 * 12 11 10 42 42 H 1.08998 * 109.46906 * 300.27883 * 13 12 11 43 43 H 1.08997 * 109.47672 * 60.28359 * 13 12 11 44 44 H 1.09002 * 109.46751 * 180.28302 * 13 12 11 45 45 H 1.09000 * 109.50164 * 182.40575 * 14 12 11 46 46 H 1.09002 * 109.53409 * 62.31257 * 14 12 11 47 47 H 1.09001 * 109.45959 * 294.18278 * 15 9 8 48 48 H 1.09002 * 109.45946 * 54.15324 * 15 9 8 49 49 H 1.00905 * 110.99830 * 321.04939 * 16 2 1 50 50 H 1.09010 * 109.46799 * 300.00181 * 17 16 2 51 51 H 1.08996 * 109.46984 * 59.99920 * 17 16 2 52 52 H 0.96996 * 119.99821 * 0.02562 * 20 18 17 53 53 H 0.96995 * 119.99699 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1907 6 6 4.1729 -1.4289 2.1910 7 8 3.5697 -1.8846 3.1393 8 6 5.6754 -1.5315 2.1337 9 7 6.1771 -2.0829 3.3993 10 6 7.5995 -2.4322 3.2941 11 6 8.0500 -3.1348 4.5768 12 6 7.8209 -2.2035 5.7705 13 6 8.2130 -2.9216 7.0634 14 6 6.3407 -1.8162 5.8289 15 6 5.9398 -1.1519 4.5099 16 7 2.0197 -0.6926 -1.1993 17 6 2.0826 0.2224 -2.3468 18 6 2.5876 -0.5221 -3.5559 19 8 2.8672 -1.6992 -3.4701 20 7 2.7276 0.1198 -4.7326 21 6 3.1875 -0.5573 -5.8324 22 1 3.4372 -1.6053 -5.7558 23 6 3.3323 0.1045 -7.0454 24 7 3.0289 1.3798 -7.1385 25 14 3.9583 -0.8183 -8.5442 26 1 3.0365 -1.9401 -8.8553 27 1 4.0224 0.1068 -9.7040 28 1 5.3143 -1.3550 -8.2641 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -1.7196 1.2954 33 1 1.7515 -0.1580 2.1371 34 1 3.9824 -0.4621 0.4321 35 1 5.9636 -2.1872 1.3121 36 1 6.1013 -0.5409 1.9746 37 1 7.7480 -3.0980 2.4439 38 1 8.1867 -1.5250 3.1515 39 1 9.1096 -3.3800 4.5047 40 1 7.4727 -4.0494 4.7127 41 1 8.4280 -1.3059 5.6539 42 1 7.6070 -3.8202 7.1781 43 1 9.2668 -3.1969 7.0210 44 1 8.0446 -2.2590 7.9124 45 1 6.1791 -1.1193 6.6513 46 1 5.7361 -2.7096 5.9849 47 1 6.5347 -0.2507 4.3616 48 1 4.8828 -0.8879 4.5429 49 1 1.4496 -1.4981 -1.4098 50 1 1.0870 0.6160 -2.5526 51 1 2.7588 1.0460 -2.1182 52 1 2.5036 1.0611 -4.8013 53 1 3.1304 1.8419 -7.9853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265844076.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -107.289669 kcal Electronic energy + Delta-G solvation = -29597.567816 eV Core-core repulsion = 25502.245879 eV Total energy + Delta-G solvation = -4095.321937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02077 -40.19523 -39.54245 -38.06663 -35.95522 -35.45242 -34.92877 -33.25730 -31.98181 -31.75515 -30.25076 -27.94891 -27.76174 -26.01875 -25.43202 -24.12098 -22.76993 -21.96618 -21.15223 -21.05771 -20.56599 -19.89955 -18.11305 -17.70783 -17.35640 -16.88168 -16.68883 -16.37626 -16.24310 -16.10747 -15.73287 -15.50068 -15.36686 -15.19346 -14.99758 -14.81149 -14.41057 -14.09528 -13.89835 -13.74377 -13.63567 -13.45074 -13.37361 -13.27749 -13.05626 -12.91983 -12.76433 -12.69874 -12.51707 -12.41790 -12.39337 -12.12243 -12.11630 -11.88039 -11.59945 -11.48298 -11.26670 -11.15838 -10.67639 -10.31827 -9.99225 -9.92097 -9.33323 -9.24283 -8.45170 -5.93353 1.40374 1.42660 1.52888 1.73910 2.08850 2.19676 2.29996 2.90368 3.04005 3.22666 3.54718 3.82506 3.87081 3.88082 3.90410 3.95635 4.14136 4.27379 4.31785 4.33781 4.36403 4.37593 4.50808 4.51774 4.53669 4.61075 4.63088 4.67773 4.75545 4.80247 4.83751 4.85203 4.90132 4.96016 5.01274 5.03453 5.15578 5.24487 5.25997 5.28221 5.35405 5.42464 5.55253 5.59123 5.90707 6.00472 6.11764 6.17072 6.37154 6.62437 6.71565 7.15003 7.38404 7.59550 8.15088 8.71710 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.013675 B = 0.001924 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.097429 B =14551.965229 C =16172.541778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 H 0.100 0.900 4 C 0.139 3.861 5 N -0.709 5.709 6 C 0.508 3.492 7 O -0.570 6.570 8 C 0.038 3.962 9 N -0.538 5.538 10 C 0.054 3.946 11 C -0.108 4.108 12 C -0.092 4.092 13 C -0.142 4.142 14 C -0.105 4.105 15 C 0.057 3.943 16 N -0.673 5.673 17 C 0.066 3.934 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.412 0.588 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.344 0.656 50 H 0.066 0.934 51 H 0.110 0.890 52 H 0.396 0.604 53 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 1.298 23.395 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.032 4.032 3 H 0.118 0.882 4 C 0.014 3.986 5 N -0.361 5.361 6 C 0.295 3.705 7 O -0.450 6.450 8 C -0.093 4.093 9 N -0.264 5.264 10 C -0.073 4.073 11 C -0.146 4.146 12 C -0.111 4.111 13 C -0.200 4.200 14 C -0.143 4.143 15 C -0.071 4.071 16 N -0.305 5.305 17 C -0.066 4.066 18 C 0.226 3.774 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.163 0.837 50 H 0.084 0.916 51 H 0.127 0.873 52 H 0.230 0.770 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.913 -0.009 24.214 24.925 hybrid contribution -0.423 0.923 -1.861 2.120 sum 5.490 0.914 22.352 23.035 Atomic orbital electron populations 1.22387 0.95043 1.02733 1.03455 1.21852 0.94254 0.98447 0.88676 0.88152 1.21286 0.80016 1.00136 0.97164 1.45829 1.07942 1.58975 1.23377 1.20882 0.90634 0.77022 0.81975 1.90647 1.70892 1.48579 1.34841 1.21963 0.91280 1.01670 0.94345 1.61536 1.18008 1.44015 1.02831 1.22191 0.86098 0.99632 0.99418 1.21635 1.01373 0.98431 0.93166 1.21191 0.95613 0.98741 0.95553 1.21774 1.01532 1.00237 0.96431 1.21577 0.96336 1.00548 0.95855 1.22118 1.00795 0.92918 0.91260 1.60158 1.58414 1.09026 1.02879 1.21572 1.01266 0.95287 0.88457 1.20935 0.83319 0.88006 0.85184 1.90509 1.56602 1.18365 1.85480 1.41922 1.58383 1.12607 1.08178 1.19603 1.42126 0.95923 0.88604 0.90411 1.25984 0.97314 0.96596 1.01284 1.69658 1.48653 1.09593 1.28117 0.85036 0.78726 0.77833 0.77041 1.19881 1.19598 1.19751 0.91956 0.92496 0.90044 0.93339 0.90654 0.75154 0.86981 0.90278 0.90255 0.93971 0.89869 0.92282 0.91033 0.93143 0.91854 0.92269 0.90820 0.92756 0.94696 0.91756 0.83669 0.91579 0.87251 0.76975 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.16 71.98 0.66 -2.32 16 2 C 0.08 1.51 2.75 44.91 0.12 1.63 16 3 H 0.10 1.67 7.80 -2.39 -0.02 1.65 16 4 C 0.14 3.01 5.37 86.38 0.46 3.47 16 5 N -0.71 -16.22 5.39 -463.04 -2.49 -18.71 16 6 C 0.51 13.20 7.36 87.66 0.65 13.84 16 7 O -0.57 -18.91 14.71 -3.02 -0.04 -18.96 16 8 C 0.04 0.79 5.45 85.56 0.47 1.26 16 9 N -0.54 -11.71 4.35 -900.97 -3.92 -15.62 16 10 C 0.05 0.91 5.46 86.32 0.47 1.38 16 11 C -0.11 -1.63 5.38 30.65 0.16 -1.47 16 12 C -0.09 -1.32 2.79 -10.71 -0.03 -1.35 16 13 C -0.14 -1.70 9.21 71.98 0.66 -1.04 16 14 C -0.11 -1.89 5.38 30.64 0.16 -1.72 16 15 C 0.06 1.18 5.12 86.32 0.44 1.62 16 16 N -0.67 -18.21 5.32 -495.58 -2.63 -20.84 16 17 C 0.07 1.99 5.97 85.56 0.51 2.50 16 18 C 0.44 19.52 7.82 87.66 0.69 20.20 16 19 O -0.62 -32.99 15.78 -3.06 -0.05 -33.04 16 20 N -0.57 -28.12 5.29 -306.99 -1.62 -29.74 16 21 C -0.33 -18.42 9.68 84.04 0.81 -17.60 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.62 5.50 84.92 0.47 -0.16 16 24 N -0.92 -48.43 13.05 21.66 0.28 -48.14 16 25 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 29 H 0.06 1.07 7.45 -2.39 -0.02 1.05 16 30 H 0.06 1.03 8.13 -2.38 -0.02 1.01 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.41 8.84 8.14 -92.71 -0.75 8.08 16 35 H 0.11 2.20 7.98 -2.39 -0.02 2.18 16 36 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 38 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 1.64 6.06 -2.39 -0.01 1.63 16 49 H 0.34 10.53 8.17 -89.69 -0.73 9.80 16 50 H 0.07 1.74 7.44 -2.38 -0.02 1.73 16 51 H 0.11 2.80 8.05 -2.39 -0.02 2.78 16 52 H 0.40 18.39 7.90 -92.71 -0.73 17.65 16 53 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -69.63 421.68 -3.05 -72.68 By element: Atomic # 1 Polarization: 49.23 SS G_CDS: -1.31 Total: 47.92 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.71 Total: 20.25 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -10.39 Total: -133.06 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.63 -3.05 -72.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265844076.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.607 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds