Wall clock time and date at job start Sat Apr 11 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47075 * 2 1 4 4 N 1.46903 * 109.47236 * 119.99833 * 2 1 3 5 5 C 1.46901 * 110.99788 * 183.95405 * 4 2 1 6 6 C 1.46901 * 110.99790 * 60.00351 * 4 2 1 7 7 C 1.50701 * 109.46921 * 189.99765 * 6 4 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 4 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 4 10 10 C 1.47015 * 125.64739 * 359.69531 * 9 7 6 11 11 C 1.54339 * 107.26094 * 178.84648 * 10 9 7 12 12 C 1.55153 * 103.02416 * 338.14031 * 11 10 9 13 13 H 1.08998 * 111.03983 * 277.21956 * 12 11 10 14 14 C 1.52997 * 111.00537 * 153.37921 * 12 11 10 15 15 N 1.46902 * 109.47055 * 72.80705 * 14 12 11 16 16 C 1.46896 * 111.00325 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47515 * 179.97438 * 16 15 14 18 18 O 1.21293 * 119.99803 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00108 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99780 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00021 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99693 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00181 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99679 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.47412 * 59.99997 * 24 22 20 26 26 H 1.48501 * 109.46866 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47400 * 299.99455 * 24 22 20 28 28 C 1.47427 * 125.64341 * 180.02562 * 9 7 6 29 29 H 1.09000 * 109.46758 * 299.99485 * 1 2 3 30 30 H 1.08995 * 109.47011 * 60.00254 * 1 2 3 31 31 H 1.09001 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47250 * 239.99940 * 2 1 3 33 33 H 1.08998 * 109.47286 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47135 * 300.00444 * 3 2 1 35 35 H 1.08998 * 109.47131 * 59.99867 * 3 2 1 36 36 H 1.09001 * 109.47121 * 296.04690 * 5 4 2 37 37 H 1.09005 * 109.47342 * 56.04784 * 5 4 2 38 38 H 1.08999 * 109.46894 * 176.04703 * 5 4 2 39 39 H 1.09002 * 109.47401 * 69.99793 * 6 4 2 40 40 H 1.09001 * 109.46874 * 309.99805 * 6 4 2 41 41 H 1.08994 * 109.88560 * 298.38860 * 10 9 7 42 42 H 1.08996 * 109.88501 * 59.56171 * 10 9 7 43 43 H 1.09005 * 110.84877 * 219.67465 * 11 10 9 44 44 H 1.08997 * 110.51374 * 96.45720 * 11 10 9 45 45 H 1.09000 * 109.47133 * 192.80666 * 14 12 11 46 46 H 1.09002 * 109.47319 * 312.81012 * 14 12 11 47 47 H 1.00904 * 110.99525 * 303.95509 * 15 14 12 48 48 H 1.09007 * 109.46687 * 299.99877 * 16 15 14 49 49 H 1.08998 * 109.47375 * 59.99831 * 16 15 14 50 50 H 0.96998 * 120.00116 * 0.02562 * 19 17 16 51 51 H 0.96999 * 119.99929 * 180.02562 * 23 22 20 52 52 H 1.09000 * 110.36996 * 322.93056 * 28 9 7 53 53 H 1.09001 * 110.36275 * 85.25994 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4851 -0.6307 1.2816 6 6 1.5488 -2.0835 1.2334 7 6 1.8581 -2.6859 2.5797 8 8 2.4156 -2.0216 3.4275 9 7 1.5144 -3.9625 2.8418 10 6 0.8311 -4.8739 1.9124 11 6 0.6732 -6.2294 2.6333 12 6 1.7735 -6.1746 3.7259 13 1 2.7431 -6.4623 3.3195 14 6 1.4018 -7.0518 4.9230 15 7 1.5450 -8.4671 4.5563 16 6 1.1951 -9.3412 5.6838 17 6 1.3531 -10.7817 5.2706 18 8 1.7206 -11.0536 4.1471 19 7 1.0861 -11.7680 6.1495 20 6 1.2303 -13.0786 5.7736 21 1 1.5583 -13.3206 4.7735 22 6 0.9545 -14.0955 6.6796 23 7 0.5559 -13.8010 7.8966 24 14 1.1504 -15.8812 6.1673 25 1 2.5586 -16.1297 5.7668 26 1 0.7961 -16.7648 7.3070 27 1 0.2515 -16.1688 5.0207 28 6 1.7552 -4.6739 4.1104 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9193 -1.1673 0.4380 37 1 3.8070 0.4104 1.2544 38 1 3.8165 -1.0892 2.2133 39 1 2.0520 -2.6566 0.4546 40 1 0.4723 -2.1069 1.0635 41 1 -0.1488 -4.4732 1.6534 42 1 1.4310 -5.0030 1.0116 43 1 0.8522 -7.0571 1.9469 44 1 -0.3155 -6.3088 3.0853 45 1 2.0630 -6.8245 5.7592 46 1 0.3695 -6.8540 5.2118 47 1 0.9905 -8.6876 3.7426 48 1 1.8546 -9.1298 6.5256 49 1 0.1613 -9.1591 5.9775 50 1 0.7918 -11.5506 7.0478 51 1 0.3637 -14.5109 8.5291 52 1 2.7152 -4.3792 4.5343 53 1 0.9497 -4.4729 4.8168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266041591.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:56 Heat of formation + Delta-G solvation = -84.187885 kcal Electronic energy + Delta-G solvation = -29188.420339 eV Core-core repulsion = 25094.100171 eV Total energy + Delta-G solvation = -4094.320168 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.28879 -40.16460 -39.43416 -38.24650 -36.60673 -35.79637 -33.38411 -33.18705 -32.76499 -30.48673 -30.15179 -28.68305 -27.40595 -26.40321 -25.55384 -24.26093 -23.89968 -21.42206 -21.04600 -20.91728 -20.14635 -19.88720 -18.27107 -18.07112 -17.50391 -17.07029 -16.70968 -16.47773 -16.40934 -16.10162 -15.89089 -15.62107 -15.22745 -15.12062 -14.81816 -14.67827 -14.51396 -14.18487 -13.83781 -13.64103 -13.50790 -13.45174 -13.40390 -13.27578 -13.15008 -12.95183 -12.85581 -12.72901 -12.68986 -12.42415 -12.36073 -12.13524 -12.05713 -11.97266 -11.67941 -11.63338 -11.54893 -11.48569 -10.82198 -10.33492 -10.00516 -9.66956 -9.30782 -9.29731 -8.45493 -5.94364 1.40882 1.42924 1.53696 1.59647 1.84544 2.06801 2.30213 2.90512 2.93614 3.22009 3.40018 3.54858 3.61571 3.82918 3.92313 3.99727 4.04728 4.23049 4.23200 4.31947 4.33799 4.37368 4.40550 4.42129 4.49983 4.55236 4.56327 4.58449 4.62580 4.75249 4.78596 4.81743 4.89833 4.91961 4.93921 4.98561 5.02149 5.09259 5.15876 5.25982 5.30713 5.37278 5.39941 5.41817 5.89515 5.94127 6.11160 6.12006 6.45281 6.51447 6.61266 7.13592 7.16495 7.57657 8.12724 8.71587 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.040237 B = 0.001438 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.714378 B =19462.894381 C =19687.539989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 C -0.146 4.146 4 N -0.540 5.540 5 C 0.020 3.980 6 C 0.042 3.958 7 C 0.523 3.477 8 O -0.568 6.568 9 N -0.621 5.621 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.089 4.089 13 H 0.082 0.918 14 C 0.074 3.926 15 N -0.682 5.682 16 C 0.065 3.935 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.116 3.884 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.347 0.653 48 H 0.102 0.898 49 H 0.069 0.931 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.063 0.937 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 27.396 -14.429 31.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.203 4.203 4 N -0.266 5.266 5 C -0.128 4.128 6 C -0.088 4.088 7 C 0.312 3.688 8 O -0.447 6.447 9 N -0.356 5.356 10 C -0.022 4.022 11 C -0.166 4.166 12 C -0.109 4.109 13 H 0.100 0.900 14 C -0.055 4.055 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.008 4.008 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.166 0.834 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.081 0.919 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.865 27.772 -14.047 31.178 hybrid contribution -0.442 -1.321 0.019 1.393 sum -2.307 26.451 -14.028 30.029 Atomic orbital electron populations 1.21925 0.93347 1.02467 1.02674 1.21763 0.96502 0.95349 0.89735 1.21903 1.01159 0.94670 1.02569 1.61710 1.11266 1.13082 1.40518 1.22510 0.86799 1.02717 1.00772 1.22046 1.04061 0.89836 0.92888 1.20747 0.77834 0.79872 0.90338 1.90663 1.43632 1.60670 1.49743 1.48612 1.59136 1.11464 1.16362 1.22246 0.98113 0.89067 0.92750 1.22763 0.99183 0.96761 0.97880 1.22216 1.00364 0.92350 0.95948 0.89984 1.21885 1.00295 0.86023 0.97320 1.60029 1.62343 1.02750 1.06322 1.21527 1.01207 0.88811 0.95239 1.20893 0.82532 0.88363 0.85730 1.90485 1.52845 1.85005 1.22611 1.41934 1.59700 1.05342 1.14073 1.19650 1.44708 0.82756 0.99432 0.90247 1.26027 0.96127 1.04108 0.94897 1.69665 1.45658 1.35541 1.05240 0.84996 0.78811 0.76682 0.77899 1.19814 1.19560 1.19583 1.22132 1.01497 0.90609 0.86535 0.92721 0.90483 0.91913 0.93364 0.92463 0.90512 0.92701 0.95352 0.90265 0.92149 0.90440 0.85665 0.89074 0.90002 0.89123 0.89669 0.90504 0.93415 0.83419 0.88012 0.91368 0.76981 0.91317 0.91853 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.99 71.98 0.65 -0.69 16 2 C 0.07 0.85 2.68 44.92 0.12 0.97 16 3 C -0.15 -1.52 8.84 71.98 0.64 -0.89 16 4 N -0.54 -9.08 4.37 -901.58 -3.94 -13.02 16 5 C 0.02 0.35 8.84 127.69 1.13 1.48 16 6 C 0.04 0.61 4.45 85.56 0.38 0.99 16 7 C 0.52 11.17 7.57 87.66 0.66 11.84 16 8 O -0.57 -17.04 14.57 -3.03 -0.04 -17.09 16 9 N -0.62 -11.09 3.33 -811.73 -2.70 -13.79 16 10 C 0.10 1.16 6.49 86.74 0.56 1.72 16 11 C -0.13 -1.76 5.89 31.79 0.19 -1.57 16 12 C -0.09 -1.61 3.25 -9.40 -0.03 -1.64 16 13 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 14 C 0.07 1.52 5.18 86.30 0.45 1.97 16 15 N -0.68 -19.83 6.13 -517.94 -3.17 -23.01 16 16 C 0.06 2.11 6.17 85.56 0.53 2.64 16 17 C 0.44 20.38 7.82 87.66 0.69 21.07 16 18 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 19 N -0.57 -29.07 5.29 -306.99 -1.62 -30.70 16 20 C -0.34 -18.94 9.68 84.04 0.81 -18.12 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 23 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 24 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.12 2.19 6.37 86.86 0.55 2.74 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.47 6.20 -2.39 -0.01 0.45 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.61 6.26 -2.39 -0.01 0.59 16 34 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.08 1.24 6.01 -2.38 -0.01 1.23 16 38 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 39 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 40 H 0.13 1.31 5.83 -2.39 -0.01 1.30 16 41 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.08 1.06 7.91 -2.39 -0.02 1.04 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 0.85 7.97 -2.39 -0.02 0.84 16 47 H 0.35 10.29 7.93 -89.69 -0.71 9.57 16 48 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 49 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 51 H 0.28 13.97 8.31 -92.71 -0.77 13.19 16 52 H 0.06 1.41 8.04 -2.39 -0.02 1.39 16 53 H 0.07 1.33 8.04 -2.39 -0.02 1.31 16 Total: -1.00 -73.11 418.51 -1.96 -75.06 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.53 Total: 38.54 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: 7.79 Total: 22.36 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -11.15 Total: -129.55 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.09 Total: -50.98 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -73.11 -1.96 -75.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266041591.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.123 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds