Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46995 * 2 1 4 4 N 1.46899 * 109.47086 * 180.02562 * 3 2 1 5 5 C 1.46895 * 110.99842 * 66.04788 * 4 3 2 6 6 C 1.46898 * 110.99987 * 190.00171 * 4 3 2 7 7 C 1.50696 * 109.47160 * 170.00239 * 6 4 3 8 8 O 1.21280 * 120.00172 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99940 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99771 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.50468 * 35.08086 * 10 9 7 12 12 C 1.53122 * 109.50283 * 274.99873 * 10 9 7 13 13 C 1.53121 * 109.15829 * 182.36613 * 12 10 9 14 14 C 1.53040 * 109.27852 * 57.65537 * 13 12 10 15 15 N 1.46846 * 109.52612 * 300.82379 * 14 13 12 16 16 C 1.46899 * 111.00302 * 185.83953 * 15 14 13 17 17 C 1.50698 * 109.46987 * 66.03980 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31414 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99969 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47234 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47403 * 120.00325 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00122 * 24 22 20 28 28 C 1.46850 * 111.19959 * 61.73780 * 15 14 13 29 29 H 1.09007 * 109.47035 * 299.99334 * 1 2 3 30 30 H 1.08994 * 109.47776 * 59.99737 * 1 2 3 31 31 H 1.09003 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47220 * 240.00575 * 2 1 3 33 33 H 1.09000 * 109.47166 * 119.99961 * 2 1 3 34 34 H 1.08997 * 109.46667 * 60.00236 * 3 2 1 35 35 H 1.09000 * 109.46771 * 300.00387 * 3 2 1 36 36 H 1.09005 * 109.46933 * 183.95114 * 5 4 3 37 37 H 1.09001 * 109.47530 * 303.95547 * 5 4 3 38 38 H 1.09004 * 109.47321 * 63.95494 * 5 4 3 39 39 H 1.09000 * 109.47276 * 49.99907 * 6 4 3 40 40 H 1.09002 * 109.47226 * 290.00632 * 6 4 3 41 41 H 0.96993 * 119.99886 * 0.02562 * 9 7 6 42 42 H 1.09005 * 109.52250 * 62.46467 * 12 10 9 43 43 H 1.08999 * 109.52549 * 302.27159 * 12 10 9 44 44 H 1.09004 * 109.50110 * 297.71716 * 13 12 10 45 45 H 1.08996 * 109.53464 * 177.61463 * 13 12 10 46 46 H 1.09000 * 109.46379 * 180.80160 * 14 13 12 47 47 H 1.09009 * 109.45199 * 60.83126 * 14 13 12 48 48 H 1.09003 * 109.46477 * 306.04469 * 16 15 14 49 49 H 1.08993 * 109.47002 * 186.04796 * 16 15 14 50 50 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 51 51 H 0.96999 * 119.99863 * 180.02562 * 23 22 20 52 52 H 1.08998 * 109.45898 * 58.27368 * 28 15 14 53 53 H 1.09001 * 109.46248 * 178.24627 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0348 0.8860 -1.2542 6 6 4.0355 2.7931 0.2375 7 6 5.5219 2.7183 0.4742 8 8 6.0869 1.6455 0.4476 9 7 6.2233 3.8436 0.7154 10 6 7.6683 3.7708 0.9460 11 1 8.0963 2.9825 0.3268 12 6 7.9355 3.4635 2.4221 13 6 9.4470 3.4476 2.6664 14 6 10.0396 4.7973 2.2548 15 7 9.7577 5.0446 0.8350 16 6 10.4295 6.2653 0.3697 17 6 11.9223 6.0632 0.4090 18 8 12.3815 5.0060 0.7870 19 7 12.7472 7.0568 0.0232 20 6 14.1055 6.8749 0.0643 21 1 14.5143 5.9339 0.4016 22 6 14.9561 7.9012 -0.3280 23 7 14.4585 9.0464 -0.7379 24 14 16.8066 7.6532 -0.2727 25 1 17.1083 6.2858 0.2217 26 1 17.3696 7.8213 -1.6365 27 1 17.4133 8.6552 0.6401 28 6 8.3123 5.1112 0.5843 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6765 1.9563 -0.8900 36 1 5.1222 0.8328 -1.2002 37 1 3.6291 -0.1142 -1.4062 38 1 3.7434 1.5266 -2.0867 39 1 3.5494 3.2235 1.1131 40 1 3.8371 3.4191 -0.6325 41 1 5.7714 4.7016 0.7371 42 1 7.5157 2.4893 2.6731 43 1 7.4741 4.2311 3.0433 44 1 9.9030 2.6542 2.0742 45 1 9.6434 3.2712 3.7239 46 1 11.1178 4.7843 2.4142 47 1 9.5929 5.5886 2.8569 48 1 10.1585 7.0986 1.0180 49 1 10.1191 6.4838 -0.6520 50 1 12.3800 7.9020 -0.2794 51 1 15.0523 9.7627 -1.0121 52 1 7.8740 5.9010 1.1943 53 1 8.1360 5.3261 -0.4696 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266246405.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -91.360967 kcal Electronic energy + Delta-G solvation = -29711.272800 eV Core-core repulsion = 25616.641583 eV Total energy + Delta-G solvation = -4094.631216 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.24972 -40.44732 -39.22656 -38.14339 -36.10658 -35.54611 -34.10123 -33.79883 -33.18212 -31.11897 -29.14453 -28.63350 -27.85668 -26.50052 -24.69209 -24.05321 -23.39555 -21.64950 -21.40516 -21.06143 -20.74237 -19.85280 -18.18877 -17.67190 -17.51045 -16.84740 -16.53914 -16.45023 -16.37869 -16.25534 -15.76902 -15.71234 -15.42655 -15.29239 -14.95734 -14.79903 -14.51412 -14.47722 -14.15022 -13.85065 -13.66101 -13.49527 -13.40973 -13.01547 -12.98183 -12.76091 -12.68486 -12.63652 -12.42266 -12.39291 -12.30021 -12.12320 -11.93500 -11.89023 -11.78760 -11.56352 -11.44143 -11.40739 -10.73082 -10.24392 -10.03052 -9.97606 -9.26505 -9.18798 -8.45500 -5.93471 1.36711 1.42133 1.55912 1.70650 1.95790 2.07800 2.30531 2.82386 3.07980 3.21722 3.39592 3.68802 3.84651 3.90622 3.98926 4.05533 4.15264 4.18451 4.29944 4.33232 4.35497 4.38103 4.44666 4.50156 4.54570 4.55186 4.58111 4.61763 4.64236 4.71191 4.73018 4.85454 4.89785 4.91830 5.01342 5.05994 5.12044 5.25075 5.26412 5.31357 5.37434 5.42757 5.44409 5.51495 5.90380 5.95922 6.09755 6.12028 6.23710 6.62926 6.66201 7.15392 7.37235 7.59032 8.15557 8.72106 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.032097 B = 0.001641 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.139365 B =17062.790630 C =17287.447353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.548 5.548 5 C 0.021 3.979 6 C 0.041 3.959 7 C 0.510 3.490 8 O -0.567 6.567 9 N -0.712 5.712 10 C 0.158 3.842 11 H 0.061 0.939 12 C -0.116 4.116 13 C -0.106 4.106 14 C 0.055 3.945 15 N -0.537 5.537 16 C 0.062 3.938 17 C 0.440 3.560 18 O -0.615 6.615 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.275 1.275 26 H -0.272 1.272 27 H -0.270 1.270 28 C 0.057 3.943 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.417 0.583 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.112 0.888 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.063 0.937 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.927 -6.285 2.133 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.069 4.069 4 N -0.272 5.272 5 C -0.127 4.127 6 C -0.089 4.089 7 C 0.297 3.703 8 O -0.445 6.445 9 N -0.365 5.365 10 C 0.052 3.948 11 H 0.079 0.921 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.072 4.072 15 N -0.262 5.262 16 C -0.069 4.069 17 C 0.227 3.773 18 O -0.501 6.501 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.196 1.196 28 C -0.071 4.071 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.147 0.853 40 H 0.104 0.896 41 H 0.254 0.746 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.061 0.939 48 H 0.091 0.909 49 H 0.130 0.870 50 H 0.230 0.770 51 H 0.086 0.914 52 H 0.082 0.918 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -28.796 -8.271 2.405 30.057 hybrid contribution 0.571 1.726 -0.467 1.877 sum -28.225 -6.545 1.938 29.039 Atomic orbital electron populations 1.21702 0.94303 1.02167 1.02277 1.21525 0.96326 0.96115 1.01993 1.22247 0.85044 0.97857 1.01790 1.61602 1.08625 1.20817 1.36167 1.22480 1.01146 1.00087 0.88955 1.22039 0.90565 0.91566 1.04776 1.21124 0.90360 0.83478 0.75349 1.90693 1.72321 1.30067 1.51381 1.45801 1.07769 1.10298 1.72682 1.20621 0.80270 0.97653 0.96228 0.92092 1.21855 0.95573 1.02020 0.96045 1.21440 0.95196 0.96513 1.01277 1.22162 1.01237 0.97027 0.86822 1.61267 1.09421 1.35994 1.19538 1.21694 0.90296 0.91875 1.03078 1.20822 0.89678 0.84351 0.82405 1.90481 1.78553 1.28333 1.52696 1.41920 1.05908 1.14898 1.58467 1.19676 0.82502 1.00763 1.43125 0.90502 1.25974 1.04564 0.94440 0.96124 1.69671 1.37597 1.04508 1.44349 0.84910 0.77193 0.78192 0.78280 1.19986 1.19699 1.19561 1.22266 0.86367 0.95893 1.02561 0.92052 0.92305 0.92375 0.92486 0.92377 0.89463 0.93833 0.92214 0.90971 0.95078 0.85265 0.89617 0.74624 0.92553 0.90054 0.93456 0.90112 0.92027 0.93927 0.90896 0.87009 0.76980 0.91364 0.91845 0.89216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 71.98 0.71 -0.47 16 2 C -0.12 -1.41 5.87 30.60 0.18 -1.23 16 3 C 0.06 0.63 4.96 86.31 0.43 1.06 16 4 N -0.55 -9.01 4.50 -927.05 -4.17 -13.18 16 5 C 0.02 0.39 9.01 127.69 1.15 1.54 16 6 C 0.04 0.51 5.45 85.56 0.47 0.98 16 7 C 0.51 10.26 7.52 87.66 0.66 10.92 16 8 O -0.57 -17.34 13.98 -3.03 -0.04 -17.38 16 9 N -0.71 -11.38 5.08 -442.28 -2.25 -13.63 16 10 C 0.16 3.61 2.61 45.05 0.12 3.73 16 11 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 12 C -0.12 -2.69 5.58 30.68 0.17 -2.51 16 13 C -0.11 -2.98 6.09 30.65 0.19 -2.79 16 14 C 0.06 1.76 5.11 86.33 0.44 2.20 16 15 N -0.54 -17.03 4.39 -900.91 -3.96 -20.99 16 16 C 0.06 2.06 5.45 85.56 0.47 2.52 16 17 C 0.44 20.84 7.46 87.66 0.65 21.49 16 18 O -0.61 -34.16 13.92 -3.07 -0.04 -34.20 16 19 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 20 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 24 Si 0.99 43.17 29.55 68.60 2.03 45.20 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 C 0.06 1.25 4.93 86.33 0.43 1.67 16 29 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.72 6.47 -2.39 -0.02 0.71 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.74 7.93 -2.39 -0.02 0.72 16 35 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 36 H 0.06 1.47 5.88 -2.38 -0.01 1.46 16 37 H 0.07 1.23 6.30 -2.39 -0.02 1.21 16 38 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.13 0.93 7.93 -2.39 -0.02 0.91 16 40 H 0.09 0.71 8.12 -2.39 -0.02 0.69 16 41 H 0.42 3.41 8.60 -92.71 -0.80 2.61 16 42 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 2.53 5.80 -2.39 -0.01 2.52 16 47 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 48 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 49 H 0.11 3.23 7.98 -2.39 -0.02 3.21 16 50 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 51 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 52 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.09 1.77 8.01 -2.39 -0.02 1.75 16 Total: -1.00 -75.49 416.00 -3.06 -78.55 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.62 Total: 34.70 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 7.34 Total: 20.94 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -11.72 Total: -127.80 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.09 Total: -51.59 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -75.49 -3.06 -78.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266246405.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.814 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds