Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46960 * 2 1 4 4 N 1.46504 * 109.46801 * 180.02562 * 3 2 1 5 5 C 1.34781 * 119.99979 * 180.02562 * 4 3 2 6 6 O 1.21288 * 119.99757 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00246 * 179.97438 * 5 4 3 8 8 C 1.52998 * 109.47442 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47298 * 179.97438 * 8 7 5 10 10 O 1.21285 * 119.99919 * 359.72839 * 9 8 7 11 11 N 1.34772 * 120.00160 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00175 * 179.72585 * 11 9 8 13 13 C 1.53002 * 109.47084 * 179.97438 * 12 11 9 14 14 N 1.46898 * 109.47185 * 180.02562 * 13 12 11 15 15 C 1.46908 * 110.99927 * 294.30472 * 14 13 12 16 16 C 1.53237 * 109.34049 * 172.74613 * 15 14 13 17 17 N 1.47084 * 108.52287 * 53.82878 * 16 15 14 18 18 C 1.36928 * 120.88168 * 128.83554 * 17 16 15 19 19 H 1.08001 * 120.00080 * 206.55927 * 18 17 16 20 20 C 1.38817 * 120.00422 * 26.56136 * 18 17 16 21 21 N 1.31624 * 119.99385 * 17.02519 * 20 18 17 22 22 Si 1.86794 * 120.00403 * 197.02787 * 20 18 17 23 23 H 1.48509 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47383 * 119.99653 * 22 20 18 25 25 H 1.48495 * 109.47290 * 239.99945 * 22 20 18 26 26 C 1.47080 * 118.23634 * 308.81649 * 17 16 15 27 27 C 1.46895 * 111.00113 * 170.00143 * 14 13 12 28 28 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46904 * 300.00261 * 1 2 3 30 30 H 1.09006 * 109.47168 * 59.99693 * 1 2 3 31 31 H 1.09004 * 109.46676 * 240.00670 * 2 1 3 32 32 H 1.08993 * 109.46958 * 120.00332 * 2 1 3 33 33 H 1.08996 * 109.47120 * 60.00539 * 3 2 1 34 34 H 1.08998 * 109.47489 * 300.00439 * 3 2 1 35 35 H 0.96990 * 120.00227 * 0.02562 * 4 3 2 36 36 H 1.09008 * 109.47097 * 60.00125 * 7 5 4 37 37 H 1.08998 * 109.47279 * 300.00220 * 7 5 4 38 38 H 1.08996 * 109.46943 * 60.00363 * 8 7 5 39 39 H 1.08998 * 109.47292 * 300.00493 * 8 7 5 40 40 H 0.97005 * 120.00018 * 359.72673 * 11 9 8 41 41 H 1.08994 * 109.47183 * 300.00043 * 12 11 9 42 42 H 1.09007 * 109.47168 * 60.00133 * 12 11 9 43 43 H 1.08994 * 109.47234 * 300.00119 * 13 12 11 44 44 H 1.08999 * 109.47162 * 59.99832 * 13 12 11 45 45 H 1.09000 * 109.48833 * 292.70463 * 15 14 13 46 46 H 1.08994 * 109.49373 * 52.78418 * 15 14 13 47 47 H 1.08997 * 109.62623 * 294.11909 * 16 15 14 48 48 H 1.09001 * 109.62799 * 173.53752 * 16 15 14 49 49 H 0.96999 * 119.99533 * 180.02562 * 21 20 18 50 50 H 1.09003 * 109.62963 * 291.47576 * 26 17 16 51 51 H 1.08996 * 109.79320 * 170.98921 * 26 17 16 52 52 H 1.08992 * 109.49528 * 307.21219 * 27 14 13 53 53 H 1.09003 * 109.49358 * 67.29366 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5725 3.6601 0.0011 7 6 5.6859 2.6097 -0.0003 8 6 6.1959 4.0522 -0.0004 9 6 7.7030 4.0522 0.0002 10 8 8.3094 3.0018 0.0056 11 7 8.3769 5.2193 0.0007 12 6 9.8418 5.2193 0.0074 13 6 10.3518 6.6618 0.0059 14 7 11.8208 6.6618 0.0119 15 6 12.3421 6.1004 1.2654 16 6 13.8635 5.9503 1.1603 17 7 14.4357 7.2495 0.7752 18 6 15.4679 7.8012 1.4859 19 1 15.6023 8.8727 1.4994 20 6 16.3418 6.9833 2.1891 21 7 16.3999 5.6963 1.9189 22 14 17.4351 7.7089 3.5185 23 1 17.1807 9.1680 3.6269 24 1 17.1344 7.0557 4.8178 25 1 18.8597 7.4801 3.1674 26 6 13.8699 7.9401 -0.3936 27 6 12.3482 8.0118 -0.2273 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9900 0.6025 -0.0013 36 1 6.0492 2.0962 -0.8905 37 1 6.0493 2.0955 0.8895 38 1 5.8327 4.5660 0.8896 39 1 5.8325 4.5660 -0.8903 40 1 7.8919 6.0594 -0.0033 41 1 10.2011 4.7074 0.9000 42 1 10.2092 4.7035 -0.8799 43 1 9.9925 7.1733 -0.8870 44 1 9.9844 7.1780 0.8929 45 1 12.0987 6.7682 2.0919 46 1 11.8916 5.1237 1.4416 47 1 14.1063 5.2045 0.4034 48 1 14.2686 5.6431 2.1244 49 1 17.0102 5.1247 2.4105 50 1 14.1134 7.3855 -1.2999 51 1 14.2789 8.9482 -0.4604 52 1 11.9022 8.4212 -1.1336 53 1 12.1048 8.6529 0.6200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266296676.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -86.155428 kcal Electronic energy + Delta-G solvation = -28715.427553 eV Core-core repulsion = 24621.022066 eV Total energy + Delta-G solvation = -4094.405487 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.13230 -40.43115 -39.68542 -36.90039 -36.77539 -35.40353 -34.07284 -33.41915 -33.15437 -31.65292 -30.40087 -28.24167 -27.34560 -25.62303 -24.74645 -24.23205 -22.62363 -22.53303 -21.64529 -20.99902 -20.78944 -18.79065 -18.57623 -17.41686 -17.26765 -17.12734 -17.03557 -16.71166 -16.63262 -16.13001 -15.95114 -15.59981 -15.35051 -15.24018 -15.10650 -14.88553 -14.77476 -14.33828 -14.08608 -13.85659 -13.80670 -13.29779 -13.21537 -13.13555 -13.00727 -12.85294 -12.77701 -12.64295 -12.53866 -12.21044 -12.15684 -12.03464 -12.03088 -11.85814 -11.75731 -11.55841 -11.42041 -10.95493 -10.94263 -10.60166 -10.11584 -10.07945 -9.30219 -8.69129 -7.88096 -5.32909 1.45750 1.47226 1.58055 1.60638 1.63579 1.93534 2.36301 2.50643 3.10925 3.27887 3.59112 3.67783 3.86323 3.90536 4.00064 4.06361 4.08310 4.14674 4.16563 4.30347 4.35079 4.35644 4.47436 4.55621 4.64541 4.66440 4.66652 4.71248 4.76096 4.83413 4.86621 4.87212 4.94564 4.97122 5.01485 5.05089 5.15505 5.20826 5.24107 5.33883 5.36852 5.41644 5.49203 5.61102 5.67460 6.14037 6.23182 6.36876 6.50614 6.55881 7.12637 7.21114 7.25989 7.83630 8.37800 9.19007 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.029332 B = 0.001399 C = 0.001363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.346423 B =20002.920833 C =20541.320602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.723 5.723 5 C 0.515 3.485 6 O -0.582 6.582 7 C -0.121 4.121 8 C -0.115 4.115 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.716 5.716 12 C 0.129 3.871 13 C 0.053 3.947 14 N -0.542 5.542 15 C 0.050 3.950 16 C 0.185 3.815 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.070 0.930 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.142 3.858 27 C 0.058 3.942 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.417 0.583 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.022 0.978 46 H 0.076 0.924 47 H -0.004 1.004 48 H 0.055 0.945 49 H 0.250 0.750 50 H 0.015 0.985 51 H 0.063 0.937 52 H 0.100 0.900 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.909 -7.367 -4.986 33.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.008 4.008 4 N -0.375 5.375 5 C 0.302 3.698 6 O -0.462 6.462 7 C -0.161 4.161 8 C -0.155 4.155 9 C 0.300 3.700 10 O -0.464 6.464 11 N -0.369 5.369 12 C 0.005 3.995 13 C -0.075 4.075 14 N -0.268 5.268 15 C -0.079 4.079 16 C 0.059 3.941 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.016 3.984 27 C -0.071 4.071 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.253 0.747 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.094 0.906 47 H 0.014 0.986 48 H 0.073 0.927 49 H 0.059 0.941 50 H 0.033 0.967 51 H 0.081 0.919 52 H 0.119 0.881 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -31.648 -7.745 -5.303 33.010 hybrid contribution 0.886 0.505 1.348 1.691 sum -30.761 -7.240 -3.955 31.848 Atomic orbital electron populations 1.21699 0.94301 1.02717 1.02207 1.21694 0.97143 0.94178 1.03608 1.21451 0.79234 0.98611 1.01494 1.46002 1.07750 1.08992 1.74768 1.20903 0.90611 0.83500 0.74761 1.90698 1.71408 1.32643 1.51443 1.21337 0.89962 0.98146 1.06639 1.21314 0.88892 0.98455 1.06838 1.21102 0.91024 0.83116 0.74779 1.90718 1.71590 1.32683 1.51359 1.45809 1.06784 1.09454 1.74847 1.21109 0.79603 0.97238 1.01592 1.22200 0.87371 0.95335 1.02575 1.61762 1.07084 1.23040 1.34867 1.22613 0.96947 0.98721 0.89654 1.20599 0.88977 0.86322 0.98181 1.44417 1.37831 1.21202 1.30434 1.19599 1.04366 0.91456 1.23998 0.91261 1.25807 0.99190 0.96306 1.03411 1.70208 1.40120 1.05459 1.42541 0.85193 0.77970 0.78321 0.78878 1.18936 1.21708 1.21907 1.21158 0.92271 0.96061 0.88897 1.22473 0.95881 0.88058 1.00721 0.91303 0.92553 0.92502 0.90396 0.90468 0.92542 0.92459 0.74716 0.87326 0.87507 0.87219 0.86960 0.74595 0.93141 0.92149 0.88025 0.93641 0.95943 0.90582 0.98581 0.92660 0.94105 0.96717 0.91895 0.88137 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 71.98 0.71 -0.08 16 2 C -0.13 -0.68 6.05 30.60 0.19 -0.49 16 3 C 0.12 1.20 5.67 86.38 0.49 1.69 16 4 N -0.72 -7.63 5.56 -463.06 -2.57 -10.20 16 5 C 0.51 8.14 7.83 87.65 0.69 8.82 16 6 O -0.58 -13.53 15.98 -3.05 -0.05 -13.58 16 7 C -0.12 -1.64 4.99 29.84 0.15 -1.49 16 8 C -0.11 -1.67 4.99 29.85 0.15 -1.52 16 9 C 0.51 10.70 7.83 87.66 0.69 11.39 16 10 O -0.58 -17.24 15.98 -3.04 -0.05 -17.29 16 11 N -0.72 -13.14 5.56 -463.06 -2.57 -15.72 16 12 C 0.13 3.17 5.60 86.38 0.48 3.65 16 13 C 0.05 1.24 5.08 86.30 0.44 1.68 16 14 N -0.54 -17.83 4.63 -895.26 -4.14 -21.98 16 15 C 0.05 1.94 5.46 86.38 0.47 2.41 16 16 C 0.19 9.33 5.42 86.35 0.47 9.80 16 17 N -0.61 -31.75 3.04 -698.11 -2.12 -33.87 16 18 C -0.26 -14.78 9.63 84.04 0.81 -13.97 16 19 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 20 C -0.05 -2.95 4.94 84.86 0.42 -2.53 16 21 N -0.94 -56.71 11.15 21.65 0.24 -56.47 16 22 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 C 0.14 5.92 6.69 86.35 0.58 6.49 16 27 C 0.06 1.87 5.62 86.39 0.49 2.36 16 28 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.42 2.14 8.47 -92.72 -0.79 1.36 16 36 H 0.11 1.37 8.10 -2.38 -0.02 1.35 16 37 H 0.11 1.39 8.10 -2.39 -0.02 1.37 16 38 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.42 4.83 8.47 -92.70 -0.79 4.05 16 41 H 0.05 1.46 6.40 -2.39 -0.02 1.45 16 42 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.10 1.86 7.97 -2.39 -0.02 1.85 16 44 H 0.05 0.99 8.12 -2.39 -0.02 0.97 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.08 2.75 6.16 -2.39 -0.01 2.74 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 48 H 0.06 3.12 6.12 -2.39 -0.01 3.11 16 49 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 50 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 52 H 0.10 2.54 7.99 -2.39 -0.02 2.52 16 53 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.31 422.47 -2.70 -80.01 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -0.68 Total: 13.50 kcal Atomic # 6 Polarization: 21.00 SS G_CDS: 7.21 Total: 28.22 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -11.17 Total: -138.24 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.10 Total: -30.87 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.31 -2.70 -80.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266296676.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.145 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds