Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47245 * 2 1 4 4 N 1.46505 * 109.47146 * 179.97438 * 3 2 1 5 5 C 1.34773 * 119.99881 * 180.02562 * 4 3 2 6 6 O 1.21585 * 120.00053 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99939 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99760 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47203 * 60.00246 * 8 7 5 10 10 C 1.52997 * 109.47242 * 299.99828 * 8 7 5 11 11 C 1.50705 * 109.46698 * 179.97438 * 8 7 5 12 12 O 1.21280 * 119.99352 * 145.00430 * 11 8 7 13 13 N 1.34775 * 120.00300 * 325.00045 * 11 8 7 14 14 C 1.46503 * 120.00007 * 180.02562 * 13 11 8 15 15 C 1.53003 * 109.46943 * 179.97438 * 14 13 11 16 16 N 1.46496 * 109.46867 * 179.97438 * 15 14 13 17 17 C 1.36935 * 120.00168 * 270.00096 * 16 15 14 18 18 H 1.07997 * 119.99803 * 144.92408 * 17 16 15 19 19 C 1.38812 * 120.00029 * 324.92336 * 17 16 15 20 20 N 1.31620 * 119.99923 * 337.94615 * 19 17 16 21 21 Si 1.86798 * 120.00018 * 157.95106 * 19 17 16 22 22 H 1.48498 * 109.47670 * 59.99599 * 21 19 17 23 23 H 1.48500 * 109.47161 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46770 * 299.99456 * 21 19 17 25 25 C 1.46503 * 119.99704 * 90.00219 * 16 15 14 26 26 C 1.53004 * 117.49740 * 183.23422 * 25 16 15 27 27 C 1.52995 * 117.49870 * 114.57730 * 25 16 15 28 28 H 1.08999 * 109.47231 * 59.99911 * 1 2 3 29 29 H 1.09000 * 109.46981 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47441 * 299.99863 * 1 2 3 31 31 H 1.09002 * 109.47441 * 240.00137 * 2 1 3 32 32 H 1.08999 * 109.47231 * 120.00089 * 2 1 3 33 33 H 1.09006 * 109.46912 * 60.00246 * 3 2 1 34 34 H 1.08999 * 109.47078 * 300.00182 * 3 2 1 35 35 H 0.97001 * 120.00047 * 359.97438 * 4 3 2 36 36 H 0.97001 * 119.99989 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.47162 * 180.02562 * 9 8 7 38 38 H 1.09001 * 109.46801 * 299.99733 * 9 8 7 39 39 H 1.08997 * 109.47363 * 59.99766 * 9 8 7 40 40 H 1.09002 * 109.47112 * 299.99776 * 10 8 7 41 41 H 1.08997 * 109.47565 * 60.00228 * 10 8 7 42 42 H 1.09007 * 109.46834 * 180.02562 * 10 8 7 43 43 H 0.96998 * 119.99871 * 359.97438 * 13 11 8 44 44 H 1.09001 * 109.46962 * 60.00266 * 14 13 11 45 45 H 1.08994 * 109.46981 * 300.00084 * 14 13 11 46 46 H 1.08995 * 109.46805 * 59.99961 * 15 14 13 47 47 H 1.09000 * 109.47048 * 299.99939 * 15 14 13 48 48 H 0.96995 * 119.99672 * 175.76702 * 20 19 17 49 49 H 1.08999 * 115.55313 * 328.90767 * 25 16 15 50 50 H 1.09001 * 117.49599 * 0.02562 * 26 25 16 51 51 H 1.09000 * 117.49619 * 145.02077 * 26 25 16 52 52 H 1.09002 * 117.50220 * 214.97803 * 27 25 16 53 53 H 1.09001 * 117.50083 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5710 3.6626 0.0008 7 7 5.5266 2.6096 0.0013 8 6 6.2591 3.8784 0.0014 9 6 5.8894 4.6806 1.2507 10 6 5.8895 4.6808 -1.2478 11 6 7.7407 3.6030 0.0021 12 8 8.4943 4.3380 -0.6001 13 7 8.2283 2.5399 0.6719 14 6 9.6687 2.2725 0.6730 15 6 9.9539 1.0180 1.5011 16 7 11.3942 0.7503 1.5016 17 6 11.9434 -0.0440 0.5308 18 1 12.9322 0.1703 0.1531 19 6 11.2291 -1.1247 0.0320 20 7 10.2572 -1.6558 0.7431 21 14 11.6474 -1.8253 -1.6483 22 1 13.0565 -2.2939 -1.6526 23 1 10.7450 -2.9661 -1.9477 24 1 11.4727 -0.7725 -2.6810 25 6 12.2470 1.3324 2.5409 26 6 13.7526 1.0780 2.4438 27 6 12.9244 0.3709 3.5195 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8900 35 1 3.9900 0.6024 0.0013 36 1 6.0116 1.7696 0.0013 37 1 6.4341 5.6248 1.2506 38 1 4.8178 4.8798 1.2507 39 1 6.1527 4.1090 2.1407 40 1 6.1530 4.1093 -2.1378 41 1 4.8179 4.8800 -1.2479 42 1 6.4349 5.6246 -1.2478 43 1 7.6256 1.9523 1.1538 44 1 10.1956 3.1220 1.1077 45 1 10.0103 2.1182 -0.3505 46 1 9.4270 0.1685 1.0667 47 1 9.6123 1.1728 2.5245 48 1 9.7180 -2.3705 0.3699 49 1 11.9238 2.2989 2.9275 50 1 14.1086 0.4779 1.6064 51 1 14.4199 1.8771 2.7668 52 1 13.0471 0.7050 4.5497 53 1 12.7352 -0.6947 3.3903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266622137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -44.982587 kcal Electronic energy + Delta-G solvation = -30631.002359 eV Core-core repulsion = 26538.382260 eV Total energy + Delta-G solvation = -4092.620099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89547 -40.50576 -38.85934 -37.36403 -36.42704 -36.16020 -34.98383 -33.89687 -32.64339 -31.87199 -29.55696 -28.28521 -27.01412 -26.45561 -24.72620 -23.23072 -22.83853 -22.52548 -22.10803 -21.55419 -20.67269 -19.81880 -18.61213 -18.02675 -17.27654 -17.07245 -16.82781 -16.79063 -16.44565 -16.25072 -15.78620 -15.65249 -15.48094 -15.35916 -14.93050 -14.63531 -14.44950 -13.99442 -13.79602 -13.77034 -13.49536 -13.37070 -13.26220 -13.18677 -12.92175 -12.89965 -12.80089 -12.63172 -12.50060 -12.38574 -12.13289 -11.98252 -11.91946 -11.71299 -11.68360 -11.39397 -11.37185 -10.94574 -10.73700 -10.49094 -10.42181 -10.13351 -9.87820 -8.56745 -7.83727 -5.47045 1.25549 1.44596 1.48119 1.53864 1.75468 1.97328 2.13454 2.49408 3.13359 3.17621 3.38446 3.42621 3.63403 3.88976 3.93737 3.96223 4.12852 4.30156 4.36615 4.39494 4.39781 4.51448 4.58376 4.61043 4.68550 4.72759 4.74147 4.79091 4.80503 4.81927 4.88152 4.94778 5.03708 5.11151 5.19087 5.20935 5.21997 5.28473 5.29037 5.33039 5.38107 5.42074 5.54872 5.57819 5.67147 5.76083 5.88042 6.40181 6.46487 6.98844 7.07220 7.13884 7.54164 7.80731 8.30262 9.08308 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010107 B = 0.002817 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.577546 B = 9936.087476 C =11232.603835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.138 3.862 4 N -0.737 5.737 5 C 0.708 3.292 6 O -0.613 6.613 7 N -0.734 5.734 8 C 0.188 3.812 9 C -0.152 4.152 10 C -0.143 4.143 11 C 0.515 3.485 12 O -0.568 6.568 13 N -0.704 5.704 14 C 0.118 3.882 15 C 0.143 3.857 16 N -0.564 5.564 17 C -0.264 4.264 18 H 0.057 0.943 19 C -0.026 4.026 20 N -0.904 5.904 21 Si 0.946 3.054 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.286 1.286 25 C 0.099 3.901 26 C -0.186 4.186 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.410 0.590 44 H 0.049 0.951 45 H 0.036 0.964 46 H 0.086 0.914 47 H 0.046 0.954 48 H 0.254 0.746 49 H 0.112 0.888 50 H 0.074 0.926 51 H 0.109 0.891 52 H 0.102 0.898 53 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.318 4.248 2.225 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.014 3.986 4 N -0.393 5.393 5 C 0.408 3.592 6 O -0.494 6.494 7 N -0.393 5.393 8 C 0.098 3.902 9 C -0.210 4.210 10 C -0.202 4.202 11 C 0.300 3.700 12 O -0.446 6.446 13 N -0.356 5.356 14 C -0.008 4.008 15 C 0.017 3.983 16 N -0.281 5.281 17 C -0.394 4.394 18 H 0.074 0.926 19 C -0.225 4.225 20 N -0.547 5.547 21 Si 0.774 3.226 22 H -0.206 1.206 23 H -0.213 1.213 24 H -0.212 1.212 25 C -0.009 4.009 26 C -0.224 4.224 27 C -0.252 4.252 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.245 0.755 36 H 0.242 0.758 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.102 0.898 42 H 0.090 0.910 43 H 0.246 0.754 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.129 0.871 50 H 0.093 0.907 51 H 0.127 0.873 52 H 0.120 0.880 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.395 5.514 1.783 17.389 hybrid contribution 0.722 -1.640 -0.817 1.969 sum -15.674 3.874 0.966 16.174 Atomic orbital electron populations 1.21677 0.93989 1.02692 1.02326 1.21702 0.97293 0.94297 1.03451 1.21310 0.77376 0.98320 1.01553 1.45145 1.07811 1.06946 1.79365 1.15940 0.81287 0.84628 0.77353 1.90843 1.68338 1.31203 1.59000 1.45172 1.04918 1.08646 1.80579 1.20254 0.85424 0.85210 0.99282 1.22143 1.04331 0.99925 0.94636 1.21997 1.03355 1.00017 0.94817 1.20802 0.90412 0.80647 0.78100 1.90706 1.60255 1.48806 1.44875 1.45974 1.09369 1.28160 1.52120 1.21908 0.79206 0.99229 1.00438 1.20983 0.85355 0.95206 0.96791 1.43397 1.03247 1.54030 1.27451 1.19153 1.02613 1.04596 1.13053 0.92552 1.25598 1.00041 0.95514 1.01299 1.70106 1.23529 1.25748 1.35333 0.85695 0.77686 0.77447 0.81724 1.20646 1.21339 1.21228 1.21545 0.90485 0.95880 0.92983 1.23054 0.94551 1.03642 1.01188 1.23263 1.08083 0.98417 0.95436 0.92447 0.91380 0.92286 0.90799 0.90537 0.92277 0.92598 0.75459 0.75787 0.90906 0.89500 0.91167 0.93223 0.89770 0.91015 0.75360 0.93225 0.94522 0.89658 0.93568 0.93643 0.87086 0.90733 0.87320 0.87951 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.13 -1.31 6.05 30.59 0.19 -1.13 16 3 C 0.14 2.09 5.67 86.38 0.49 2.58 16 4 N -0.74 -12.27 5.56 -478.53 -2.66 -14.93 16 5 C 0.71 16.18 7.98 179.06 1.43 17.61 16 6 O -0.61 -17.72 12.55 -3.98 -0.05 -17.77 16 7 N -0.73 -15.79 4.86 -441.45 -2.15 -17.94 16 8 C 0.19 4.82 0.98 2.86 0.00 4.82 16 9 C -0.15 -3.53 8.38 71.98 0.60 -2.93 16 10 C -0.14 -3.87 7.93 71.98 0.57 -3.30 16 11 C 0.52 16.07 6.65 87.66 0.58 16.65 16 12 O -0.57 -22.35 16.10 -3.03 -0.05 -22.39 16 13 N -0.70 -20.87 5.25 -463.05 -2.43 -23.30 16 14 C 0.12 4.43 6.00 86.38 0.52 4.95 16 15 C 0.14 5.85 5.45 86.38 0.47 6.32 16 16 N -0.56 -25.81 2.78 -678.05 -1.88 -27.70 16 17 C -0.26 -13.52 8.63 84.03 0.73 -12.80 16 18 H 0.06 2.96 6.55 -2.91 -0.02 2.94 16 19 C -0.03 -1.35 4.96 84.86 0.42 -0.93 16 20 N -0.90 -47.41 11.33 21.65 0.25 -47.17 16 21 Si 0.95 42.44 29.61 68.60 2.03 44.47 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 25 C 0.10 3.90 6.56 44.99 0.30 4.19 16 26 C -0.19 -6.82 9.80 30.62 0.30 -6.52 16 27 C -0.21 -7.92 10.36 30.62 0.32 -7.60 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 4.98 8.49 -92.71 -0.79 4.19 16 36 H 0.41 7.54 7.26 -92.71 -0.67 6.87 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 2.17 6.16 -2.39 -0.01 2.15 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 2.32 6.16 -2.39 -0.01 2.30 16 42 H 0.07 1.95 7.87 -2.38 -0.02 1.94 16 43 H 0.41 9.86 7.22 -92.71 -0.67 9.19 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.09 3.90 5.35 -2.39 -0.01 3.89 16 47 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 48 H 0.25 12.88 8.32 -92.71 -0.77 12.11 16 49 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 50 H 0.07 3.09 6.37 -2.39 -0.02 3.08 16 51 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 52 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 53 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -65.12 422.77 -0.52 -65.64 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -1.20 Total: 39.82 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 7.63 Total: 21.27 kcal Atomic # 7 Polarization: -122.16 SS G_CDS: -8.88 Total: -131.03 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.10 Total: -40.17 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.12 -0.52 -65.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266622137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.658 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds