Wall clock time and date at job start Sat Apr 11 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46800 * 2 1 4 4 N 1.46888 * 109.47397 * 120.00254 * 2 1 3 5 5 C 1.49008 * 110.97452 * 183.29124 * 4 2 1 6 6 C 1.54934 * 103.00822 * 200.29887 * 5 4 2 7 7 C 1.54594 * 103.07996 * 37.39504 * 6 5 4 8 8 C 1.47907 * 110.99971 * 65.84629 * 4 2 1 9 9 H 1.08993 * 109.91309 * 26.49986 * 8 4 2 10 10 C 1.50693 * 110.08324 * 265.29237 * 8 4 2 11 11 O 1.21277 * 120.00294 * 0.85459 * 10 8 4 12 12 N 1.34779 * 119.99844 * 180.86330 * 10 8 4 13 13 C 1.46498 * 120.00106 * 359.97438 * 12 10 8 14 14 C 1.46500 * 119.99934 * 180.02562 * 12 10 8 15 15 C 1.52996 * 109.47535 * 89.99351 * 14 12 10 16 16 N 1.46895 * 109.47348 * 179.97438 * 15 14 12 17 17 C 1.46905 * 111.00500 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.47533 * 179.97438 * 17 16 15 19 19 O 1.21295 * 119.99732 * 0.02562 * 18 17 16 20 20 N 1.34768 * 119.99987 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99744 * 180.02562 * 20 18 17 22 22 H 1.07992 * 120.00174 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99866 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00025 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00206 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46840 * 59.99537 * 25 23 21 27 27 H 1.48495 * 109.46981 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46937 * 300.00082 * 25 23 21 29 29 H 1.08993 * 109.46971 * 299.99623 * 1 2 3 30 30 H 1.08998 * 109.46712 * 59.99565 * 1 2 3 31 31 H 1.08994 * 109.46869 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46790 * 240.00468 * 2 1 3 33 33 H 1.09001 * 109.46902 * 185.77195 * 3 2 1 34 34 H 1.09001 * 109.47854 * 305.77025 * 3 2 1 35 35 H 1.09003 * 109.47199 * 65.77624 * 3 2 1 36 36 H 1.09005 * 110.85957 * 81.89710 * 5 4 2 37 37 H 1.08996 * 110.67874 * 318.62111 * 5 4 2 38 38 H 1.09008 * 110.72689 * 278.95263 * 6 5 4 39 39 H 1.08992 * 110.72562 * 155.84298 * 6 5 4 40 40 H 1.09001 * 110.30767 * 96.87499 * 7 6 5 41 41 H 1.09003 * 110.31438 * 218.93813 * 7 6 5 42 42 H 1.08996 * 109.47275 * 90.00572 * 13 12 10 43 43 H 1.08999 * 109.47472 * 210.00584 * 13 12 10 44 44 H 1.09005 * 109.46944 * 330.00410 * 13 12 10 45 45 H 1.08999 * 109.46980 * 209.99415 * 14 12 10 46 46 H 1.08999 * 109.46938 * 329.99221 * 14 12 10 47 47 H 1.08999 * 109.47038 * 300.00028 * 15 14 12 48 48 H 1.08999 * 109.47114 * 59.99977 * 15 14 12 49 49 H 1.00899 * 111.00103 * 56.04096 * 16 15 14 50 50 H 1.09001 * 109.46550 * 300.00251 * 17 16 15 51 51 H 1.08996 * 109.46725 * 59.99753 * 17 16 15 52 52 H 0.96997 * 120.00539 * 359.97438 * 20 18 17 53 53 H 0.96997 * 120.00472 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 3.5072 -0.6432 1.2737 6 6 3.8473 -1.8122 2.2319 7 6 2.8137 -2.8945 1.8441 8 6 1.6638 -2.1277 1.1652 9 1 1.5555 -2.4588 0.1324 10 6 0.3780 -2.3599 1.9160 11 8 -0.2060 -1.4252 2.4221 12 7 -0.1228 -3.6064 2.0253 13 6 0.5824 -4.7354 1.4136 14 6 -1.3731 -3.8321 2.7548 15 6 -2.5546 -3.7176 1.7895 16 7 -3.8082 -3.9445 2.5209 17 6 -4.9671 -3.8426 1.6238 18 6 -6.2318 -4.0814 2.4077 19 8 -6.1735 -4.3130 3.5969 20 7 -7.4275 -4.0364 1.7877 21 6 -8.5781 -4.2530 2.5010 22 1 -8.5262 -4.4601 3.5596 23 6 -9.8109 -4.2072 1.8616 24 7 -9.8740 -3.9557 0.5734 25 14 -11.3787 -4.5031 2.8334 26 1 -11.4940 -3.4854 3.9086 27 1 -12.5500 -4.3995 1.9266 28 1 -11.3381 -5.8590 3.4375 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1251 1.4443 -0.1034 34 1 1.5948 1.9854 -0.8338 35 1 1.7635 1.9256 0.9372 36 1 3.8437 0.3062 1.6904 37 1 3.9475 -0.8108 0.2908 38 1 3.7175 -1.5096 3.2710 39 1 4.8626 -2.1692 2.0596 40 1 3.2557 -3.6076 1.1483 41 1 2.4531 -3.4096 2.7345 42 1 1.2896 -5.1533 2.1301 43 1 -0.1381 -5.5009 1.1256 44 1 1.1205 -4.3920 0.5300 45 1 -1.3607 -4.8281 3.1974 46 1 -1.4739 -3.0856 3.5426 47 1 -2.5670 -2.7216 1.3469 48 1 -2.4538 -4.4640 1.0017 49 1 -3.8944 -3.3061 3.2975 50 1 -4.9965 -2.8475 1.1800 51 1 -4.8825 -4.5899 0.8349 52 1 -7.4742 -3.8500 0.8369 53 1 -10.7346 -3.9233 0.1271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266699871.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:43 Heat of formation + Delta-G solvation = -83.426600 kcal Electronic energy + Delta-G solvation = -30305.311279 eV Core-core repulsion = 26211.024122 eV Total energy + Delta-G solvation = -4094.287156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58436 -40.20337 -39.34502 -37.37707 -36.31750 -35.82292 -35.27481 -33.30294 -31.74927 -30.32145 -30.00640 -28.11870 -27.81237 -27.18411 -25.73072 -24.04631 -22.93634 -21.98378 -21.32679 -21.06857 -20.08880 -19.87302 -18.18042 -17.87304 -17.53340 -17.30528 -17.02479 -16.54886 -16.16968 -15.95587 -15.77869 -15.50963 -15.38427 -14.79312 -14.77274 -14.71967 -14.27879 -14.06485 -13.95067 -13.83088 -13.62923 -13.53249 -13.37876 -13.28502 -13.12888 -12.98068 -12.86300 -12.72984 -12.45719 -12.44337 -12.22112 -12.15147 -12.12939 -12.06796 -11.90047 -11.76677 -11.65156 -11.52268 -10.65993 -10.41669 -10.04402 -9.66597 -9.46428 -9.34102 -8.48177 -5.97490 1.39107 1.40872 1.52260 1.68676 1.86654 2.01450 2.28662 2.86549 3.02968 3.18311 3.44668 3.55572 3.60430 3.83755 3.91107 4.01520 4.02784 4.11517 4.16711 4.26400 4.26782 4.35920 4.37607 4.43969 4.47088 4.54038 4.56526 4.67168 4.70731 4.74728 4.80684 4.82555 4.86546 4.89230 4.93618 4.95094 4.96534 5.02478 5.12487 5.22525 5.30669 5.36489 5.38988 5.49170 5.80691 5.87690 6.03582 6.11513 6.24548 6.46363 6.57235 7.09824 7.29223 7.52561 8.07699 8.68990 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.001862 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.305450 B =15032.931341 C =15838.998886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.073 3.927 3 C -0.139 4.139 4 N -0.519 5.519 5 C 0.038 3.962 6 C -0.122 4.122 7 C -0.118 4.118 8 C 0.054 3.946 9 H 0.090 0.910 10 C 0.512 3.488 11 O -0.560 6.560 12 N -0.616 5.616 13 C 0.069 3.931 14 C 0.126 3.874 15 C 0.058 3.942 16 N -0.675 5.675 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.087 0.913 49 H 0.342 0.658 50 H 0.058 0.942 51 H 0.109 0.891 52 H 0.397 0.603 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.728 2.599 -7.229 33.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.035 4.035 3 C -0.197 4.197 4 N -0.245 5.245 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.058 4.058 9 H 0.108 0.892 10 C 0.300 3.700 11 O -0.437 6.437 12 N -0.351 5.351 13 C -0.072 4.072 14 C 0.002 3.998 15 C -0.072 4.072 16 N -0.307 5.307 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.819 3.181 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.196 1.196 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.034 0.966 48 H 0.105 0.895 49 H 0.160 0.840 50 H 0.076 0.924 51 H 0.127 0.873 52 H 0.230 0.770 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 32.098 2.541 -5.936 32.741 hybrid contribution -1.180 0.712 -0.769 1.578 sum 30.918 3.253 -6.704 31.803 Atomic orbital electron populations 1.21762 0.95392 1.00571 1.01226 1.21814 0.94951 0.96212 0.90523 1.21808 1.01522 0.94227 1.02097 1.64470 1.11495 1.09500 1.39046 1.23374 0.85936 1.00126 0.99472 1.22506 0.99738 0.94401 0.99312 1.22513 0.93568 0.98120 1.01370 1.22318 0.93231 0.90912 0.99342 0.89228 1.21078 0.86653 0.81954 0.80282 1.90692 1.61739 1.42912 1.48328 1.47905 1.23879 1.08027 1.55239 1.22178 0.97959 0.88274 0.98816 1.21175 0.82098 1.02886 0.93613 1.22239 0.88688 0.99276 0.97038 1.60053 1.00560 1.59181 1.10911 1.21518 0.88070 1.01843 0.95145 1.20785 0.85612 0.82792 0.88345 1.90489 1.87480 1.55382 1.17525 1.41917 1.04856 1.62568 1.11527 1.19652 0.84664 1.47611 0.94631 0.90246 1.26089 1.02023 0.96337 0.96919 1.69667 1.27873 1.48858 1.09656 0.84955 0.76484 0.78942 0.77746 1.19764 1.19365 1.19559 0.93946 0.91622 0.94850 0.92772 0.91180 0.91250 0.93300 0.89743 0.91791 0.92195 0.88095 0.87269 0.91067 0.90546 0.89917 0.89436 0.88166 0.92334 0.96620 0.89459 0.83966 0.92365 0.87312 0.76957 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 7.94 71.98 0.57 -2.35 16 2 C 0.07 1.24 2.40 44.92 0.11 1.34 16 3 C -0.14 -1.99 8.81 71.98 0.63 -1.35 16 4 N -0.52 -9.42 4.35 -836.12 -3.64 -13.06 16 5 C 0.04 0.43 5.33 86.55 0.46 0.90 16 6 C -0.12 -1.17 7.05 31.80 0.22 -0.95 16 7 C -0.12 -1.13 4.97 31.47 0.16 -0.98 16 8 C 0.05 0.85 1.54 44.31 0.07 0.92 16 9 H 0.09 1.13 6.89 -2.39 -0.02 1.11 16 10 C 0.51 11.91 5.53 87.65 0.49 12.39 16 11 O -0.56 -18.61 14.11 -3.02 -0.04 -18.65 16 12 N -0.62 -11.73 2.85 -846.78 -2.41 -14.14 16 13 C 0.07 0.67 9.05 127.77 1.16 1.82 16 14 C 0.13 2.99 5.67 86.38 0.49 3.48 16 15 C 0.06 1.53 6.01 86.30 0.52 2.05 16 16 N -0.67 -23.07 6.12 -517.95 -3.17 -26.25 16 17 C 0.07 2.46 6.17 85.55 0.53 2.98 16 18 C 0.44 21.74 7.82 87.66 0.69 22.43 16 19 O -0.62 -35.78 15.78 -3.08 -0.05 -35.83 16 20 N -0.57 -30.33 5.29 -307.00 -1.62 -31.95 16 21 C -0.34 -19.57 9.68 84.04 0.81 -18.75 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.47 13.05 21.66 0.28 -50.18 16 25 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 29 H 0.04 1.20 7.61 -2.39 -0.02 1.18 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 0.80 6.21 -2.39 -0.01 0.79 16 32 H 0.05 0.74 7.93 -2.39 -0.02 0.72 16 33 H 0.07 0.75 7.19 -2.39 -0.02 0.73 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.00 7.79 -2.38 -0.02 0.98 16 37 H 0.06 0.52 8.02 -2.39 -0.02 0.50 16 38 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.11 0.39 8.10 -2.39 -0.02 0.37 16 41 H 0.07 0.82 6.83 -2.39 -0.02 0.81 16 42 H 0.08 0.50 7.53 -2.39 -0.02 0.48 16 43 H 0.08 0.71 8.07 -2.39 -0.02 0.69 16 44 H 0.09 0.51 6.17 -2.38 -0.01 0.50 16 45 H 0.10 2.10 8.07 -2.39 -0.02 2.08 16 46 H 0.06 1.70 7.42 -2.39 -0.02 1.68 16 47 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.34 12.75 8.43 -89.69 -0.76 11.99 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 52 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 53 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -77.10 414.80 -1.84 -78.94 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -0.58 Total: 41.78 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 7.37 Total: 23.65 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -10.56 Total: -135.57 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.09 Total: -54.49 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.10 -1.84 -78.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266699871.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.491 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds