Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 C 1.52998 * 109.46750 * 119.99655 * 2 1 3 5 5 H 1.08999 * 109.47358 * 54.10536 * 4 2 1 6 6 C 1.50707 * 109.46917 * 174.09764 * 4 2 1 7 7 O 1.21285 * 119.99753 * 64.72659 * 6 4 2 8 8 N 1.34773 * 120.00160 * 244.72390 * 6 4 2 9 9 C 1.47288 * 125.79272 * 359.97438 * 8 6 4 10 10 C 1.54324 * 107.30709 * 178.92758 * 9 8 6 11 11 C 1.55163 * 102.94125 * 337.82040 * 10 9 8 12 12 H 1.09006 * 111.00242 * 277.42862 * 11 10 9 13 13 N 1.46894 * 111.03913 * 153.59017 * 11 10 9 14 14 C 1.46902 * 110.99801 * 92.78668 * 13 11 10 15 15 C 1.50701 * 109.47206 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00098 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00389 * 179.97438 * 15 14 13 18 18 C 1.37093 * 119.99940 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00200 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99796 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00112 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00049 * 0.02562 * 20 18 17 23 23 H 1.48508 * 109.46776 * 89.99701 * 22 20 18 24 24 H 1.48495 * 109.47383 * 209.99861 * 22 20 18 25 25 H 1.48495 * 109.47049 * 330.00220 * 22 20 18 26 26 C 1.47422 * 125.64688 * 180.02562 * 8 6 4 27 27 N 1.46899 * 109.47471 * 294.09643 * 4 2 1 28 28 C 1.46902 * 110.99966 * 144.45526 * 27 4 2 29 29 C 1.46898 * 111.00046 * 268.41029 * 27 4 2 30 30 H 1.09002 * 109.47004 * 305.02963 * 1 2 3 31 31 H 1.08994 * 109.46890 * 65.03169 * 1 2 3 32 32 H 1.09002 * 109.47004 * 185.03029 * 1 2 3 33 33 H 1.08995 * 109.46935 * 239.99356 * 2 1 3 34 34 H 1.08999 * 109.47295 * 44.43734 * 3 2 1 35 35 H 1.09000 * 109.46761 * 164.44191 * 3 2 1 36 36 H 1.09001 * 109.46650 * 284.44081 * 3 2 1 37 37 H 1.08995 * 109.85419 * 59.50396 * 9 8 6 38 38 H 1.08999 * 110.00102 * 298.43138 * 9 8 6 39 39 H 1.08993 * 110.72473 * 219.45854 * 10 9 8 40 40 H 1.09001 * 110.87231 * 96.24890 * 10 9 8 41 41 H 1.00900 * 110.99954 * 328.83325 * 13 11 10 42 42 H 1.09001 * 109.47042 * 299.99583 * 14 13 11 43 43 H 1.08993 * 109.47750 * 60.00026 * 14 13 11 44 44 H 0.97000 * 119.99714 * 359.97438 * 17 15 14 45 45 H 0.97000 * 119.99700 * 180.02562 * 21 20 18 46 46 H 1.09008 * 110.36964 * 85.25999 * 26 8 6 47 47 H 1.09001 * 110.36668 * 323.04946 * 26 8 6 48 48 H 1.08996 * 109.47443 * 59.02255 * 28 27 4 49 49 H 1.08999 * 109.47259 * 179.03011 * 28 27 4 50 50 H 1.09000 * 109.46853 * 299.02065 * 28 27 4 51 51 H 1.08994 * 109.47270 * 48.26956 * 29 27 4 52 52 H 1.09006 * 109.46811 * 168.26486 * 29 27 4 53 53 H 1.08994 * 109.47275 * 288.25989 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.5930 -1.7138 1.3037 6 6 3.5399 -0.8490 1.1785 7 8 4.2348 0.1449 1.1983 8 7 4.1091 -2.0676 1.0931 9 6 3.3912 -3.3533 1.0603 10 6 4.4510 -4.4677 0.9313 11 6 5.6701 -3.7199 0.3295 12 1 5.5764 -3.6273 -0.7525 13 7 6.9284 -4.3860 0.6912 14 6 7.3295 -5.3501 -0.3421 15 6 8.6211 -6.0125 0.0631 16 8 9.1552 -5.7107 1.1095 17 7 9.1828 -6.9402 -0.7371 18 6 10.3580 -7.5423 -0.3687 19 1 10.8335 -7.2736 0.5630 20 6 10.9368 -8.4991 -1.1935 21 7 12.0631 -9.0766 -0.8401 22 14 10.1140 -8.9644 -2.8047 23 1 10.6171 -8.0840 -3.8897 24 1 10.4269 -10.3791 -3.1299 25 1 8.6439 -8.7997 -2.6753 26 6 5.5567 -2.3364 1.0181 27 7 1.6700 0.0487 2.4445 28 6 1.3451 -0.8433 3.5655 29 6 2.7342 0.9917 2.8134 30 1 -0.3633 0.5899 0.8415 31 1 -0.3633 0.4338 -0.9316 32 1 -0.3633 -1.0237 0.0901 33 1 1.8933 -0.5139 -0.8899 34 1 1.4693 2.0296 0.7195 35 1 3.0945 1.4550 0.2756 36 1 1.9194 1.8704 -0.9952 37 1 2.7189 -3.3801 0.2029 38 1 2.8232 -3.4868 1.9810 39 1 4.1070 -5.2507 0.2556 40 1 4.6977 -4.8840 1.9080 41 1 6.8551 -4.8322 1.5932 42 1 6.5531 -6.1069 -0.4539 43 1 7.4692 -4.8301 -1.2897 44 1 8.7555 -7.1818 -1.5738 45 1 12.4673 -9.7443 -1.4161 46 1 5.9881 -2.3736 2.0184 47 1 6.0537 -1.5729 0.4196 48 1 2.2061 -1.4726 3.7905 49 1 1.0915 -0.2474 4.4423 50 1 0.4964 -1.4717 3.2956 51 1 3.0512 1.5457 1.9299 52 1 2.3587 1.6880 3.5634 53 1 3.5822 0.4414 3.2209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267022676.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -65.068645 kcal Electronic energy + Delta-G solvation = -30614.279226 eV Core-core repulsion = 26520.788130 eV Total energy + Delta-G solvation = -4093.491096 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93441 -40.41567 -39.51945 -37.68802 -36.26256 -35.64253 -35.13189 -33.75436 -31.93163 -30.26217 -29.15828 -28.76764 -27.58095 -27.38764 -25.51346 -24.30820 -23.48610 -22.02692 -21.45135 -21.25010 -20.29937 -20.03289 -18.43617 -17.77894 -17.54820 -17.14457 -16.85771 -16.59804 -16.43278 -16.09789 -15.66837 -15.14594 -15.04006 -14.87479 -14.76039 -14.70105 -14.47410 -14.23206 -14.12668 -13.99419 -13.89063 -13.81347 -13.49876 -13.24361 -13.01515 -12.86604 -12.79775 -12.78572 -12.54793 -12.44065 -12.40669 -12.36069 -11.97298 -11.91477 -11.77912 -11.68423 -11.51600 -11.37791 -10.73287 -10.46517 -10.25362 -9.72707 -9.35127 -9.33415 -8.41322 -6.02669 1.30279 1.36844 1.43995 1.45527 1.81106 1.95361 2.23603 2.71846 2.89558 3.14949 3.24323 3.38606 3.62474 3.79466 3.84366 3.96289 3.99378 4.14504 4.18075 4.22413 4.31346 4.38855 4.41754 4.44669 4.50488 4.55293 4.61460 4.62776 4.67223 4.74515 4.81462 4.84679 4.91805 4.97509 4.98189 5.02988 5.07781 5.15099 5.17689 5.22746 5.29030 5.52517 5.56640 5.58191 5.87178 5.89243 5.95053 6.01708 6.31285 6.45351 6.59278 6.87934 7.04900 7.39418 7.96333 8.76310 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.001917 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.156969 B =14600.439277 C =14910.284343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.160 4.160 4 C 0.079 3.921 5 H 0.113 0.887 6 C 0.497 3.503 7 O -0.562 6.562 8 N -0.617 5.617 9 C 0.100 3.900 10 C -0.156 4.156 11 C 0.086 3.914 12 H 0.108 0.892 13 N -0.679 5.679 14 C 0.066 3.934 15 C 0.446 3.554 16 O -0.617 6.617 17 N -0.589 5.589 18 C -0.329 4.329 19 H 0.053 0.947 20 C -0.018 4.018 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.226 1.226 26 C 0.115 3.885 27 N -0.514 5.514 28 C 0.016 3.984 29 C 0.014 3.986 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.349 0.651 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.391 0.609 45 H 0.279 0.721 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.016 0.984 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.066 0.934 53 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.238 13.614 -1.492 35.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.091 4.091 3 C -0.217 4.217 4 C -0.033 4.033 5 H 0.131 0.869 6 C 0.286 3.714 7 O -0.441 6.441 8 N -0.351 5.351 9 C -0.022 4.022 10 C -0.195 4.195 11 C -0.025 4.025 12 H 0.126 0.874 13 N -0.311 5.311 14 C -0.066 4.066 15 C 0.234 3.766 16 O -0.502 6.502 17 N -0.231 5.231 18 C -0.459 4.459 19 H 0.071 0.929 20 C -0.216 4.216 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.201 1.201 25 H -0.149 1.149 26 C -0.009 4.009 27 N -0.237 5.237 28 C -0.131 4.131 29 C -0.134 4.134 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.227 0.773 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.035 0.965 49 H 0.096 0.904 50 H 0.110 0.890 51 H 0.112 0.888 52 H 0.085 0.915 53 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -31.409 15.043 -1.143 34.844 hybrid contribution 1.085 -1.606 0.061 1.939 sum -30.324 13.437 -1.082 33.185 Atomic orbital electron populations 1.21673 0.92387 1.02448 1.02129 1.20973 0.97757 0.96189 0.94195 1.22150 1.02090 0.96178 1.01261 1.22080 0.87587 0.99601 0.94027 0.86909 1.21833 0.92475 0.81261 0.75860 1.90646 1.65947 1.36611 1.50885 1.48830 1.07658 1.06627 1.72014 1.22272 0.95361 0.80946 1.03620 1.23390 0.95226 0.98005 1.02902 1.22692 0.86996 0.92304 1.00532 0.87370 1.59796 1.31807 1.34089 1.05430 1.21653 0.92927 0.95243 0.96787 1.21043 0.88762 0.81739 0.85008 1.90558 1.66490 1.65918 1.27200 1.42013 1.22188 1.37439 1.21486 1.18993 0.99832 1.20179 1.06859 0.92858 1.26172 0.96525 0.95688 1.03236 1.69812 1.19782 1.27793 1.40175 0.85337 0.80416 0.78623 0.76950 1.18349 1.20122 1.14945 1.21997 0.81370 0.97192 1.00304 1.62350 1.39567 1.17343 1.04486 1.22639 1.00463 0.96226 0.93817 1.22935 0.91284 0.96456 1.02699 0.91992 0.92318 0.91775 0.90990 0.92043 0.92046 0.93044 0.88488 0.89955 0.87210 0.90418 0.83047 0.89448 0.86734 0.77346 0.91160 0.92773 0.92074 0.96547 0.90410 0.88970 0.88762 0.91493 0.97707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.00 71.98 0.65 -0.62 16 2 C -0.07 -0.98 2.72 -10.79 -0.03 -1.01 16 3 C -0.16 -2.76 7.58 71.98 0.55 -2.21 16 4 C 0.08 1.15 2.00 44.17 0.09 1.23 16 5 H 0.11 1.10 6.17 -2.39 -0.01 1.09 16 6 C 0.50 10.46 6.02 87.66 0.53 10.99 16 7 O -0.56 -15.99 11.33 -3.04 -0.03 -16.02 16 8 N -0.62 -11.36 3.33 -811.03 -2.70 -14.06 16 9 C 0.10 1.05 5.83 86.68 0.51 1.55 16 10 C -0.16 -1.85 6.55 31.79 0.21 -1.64 16 11 C 0.09 1.58 3.38 46.32 0.16 1.74 16 12 H 0.11 1.73 7.83 -2.38 -0.02 1.71 16 13 N -0.68 -18.22 6.04 -488.33 -2.95 -21.17 16 14 C 0.07 1.80 6.03 85.56 0.52 2.32 16 15 C 0.45 19.40 7.82 87.66 0.69 20.08 16 16 O -0.62 -33.74 15.78 -3.07 -0.05 -33.79 16 17 N -0.59 -26.93 5.09 -306.98 -1.56 -28.49 16 18 C -0.33 -19.09 10.16 84.04 0.85 -18.23 16 19 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 20 C -0.02 -0.97 5.50 84.93 0.47 -0.51 16 21 N -0.94 -56.11 13.96 21.66 0.30 -55.81 16 22 Si 0.97 37.79 27.74 68.60 1.90 39.69 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.23 -7.20 6.52 99.48 0.65 -6.55 16 26 C 0.12 2.62 6.60 86.87 0.57 3.19 16 27 N -0.51 -7.90 4.15 -927.74 -3.85 -11.75 16 28 C 0.02 0.19 9.36 127.69 1.20 1.39 16 29 C 0.01 0.28 7.45 127.69 0.95 1.23 16 30 H 0.06 0.71 7.84 -2.39 -0.02 0.69 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.05 7.31 -2.39 -0.02 1.03 16 35 H 0.06 1.41 4.20 -2.39 -0.01 1.40 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.59 8.09 -2.39 -0.02 0.57 16 38 H 0.08 0.67 8.04 -2.39 -0.02 0.65 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.08 1.04 7.75 -2.39 -0.02 1.02 16 41 H 0.35 10.02 7.89 -89.69 -0.71 9.31 16 42 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.11 2.63 8.09 -2.39 -0.02 2.61 16 44 H 0.39 14.47 5.76 -92.71 -0.53 13.93 16 45 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.05 1.42 8.14 -2.38 -0.02 1.41 16 47 H 0.06 1.64 8.03 -2.39 -0.02 1.62 16 48 H 0.02 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.08 0.84 8.13 -2.39 -0.02 0.82 16 50 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 51 H 0.09 2.16 3.59 -2.39 -0.01 2.15 16 52 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 53 H 0.00 0.11 6.85 -2.39 -0.02 0.09 16 Total: -1.00 -80.50 406.78 -1.44 -81.94 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -0.39 Total: 39.96 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.89 Total: 19.49 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -10.77 Total: -131.28 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.08 Total: -49.81 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.69 kcal Total: -80.50 -1.44 -81.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267022676.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.868 kcal (2) G-P(sol) polarization free energy of solvation -80.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds