Wall clock time and date at job start Sat Apr 11 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46808 * 2 1 4 4 H 1.09000 * 109.46974 * 175.26660 * 3 2 1 5 5 C 1.50701 * 109.47051 * 55.27024 * 3 2 1 6 6 O 1.21283 * 119.99744 * 264.41829 * 5 3 2 7 7 N 1.34777 * 120.00057 * 84.42179 * 5 3 2 8 8 C 1.47019 * 125.64704 * 354.70379 * 7 5 3 9 9 C 1.54325 * 107.26781 * 178.98699 * 8 7 5 10 10 C 1.55160 * 102.94561 * 337.80621 * 9 8 7 11 11 H 1.09001 * 111.00347 * 277.43088 * 10 9 8 12 12 C 1.53001 * 111.00405 * 153.61580 * 10 9 8 13 13 N 1.46899 * 109.47364 * 69.58252 * 12 10 9 14 14 C 1.46898 * 110.99901 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46822 * 180.02562 * 14 13 12 16 16 O 1.21291 * 120.00460 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00101 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00213 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00072 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99798 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99970 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00264 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46928 * 90.00173 * 22 20 18 24 24 H 1.48500 * 109.47318 * 210.00080 * 22 20 18 25 25 H 1.48501 * 109.47409 * 330.00661 * 22 20 18 26 26 C 1.47426 * 125.64690 * 174.75630 * 7 5 3 27 27 N 1.46899 * 109.47448 * 295.26860 * 3 2 1 28 28 C 1.46893 * 111.00126 * 188.35291 * 27 3 2 29 29 C 1.46900 * 110.99924 * 312.30714 * 27 3 2 30 30 H 1.08994 * 109.47729 * 304.36236 * 1 2 3 31 31 H 1.09003 * 109.47371 * 64.36640 * 1 2 3 32 32 H 1.09002 * 109.46659 * 184.35927 * 1 2 3 33 33 H 1.09000 * 109.47182 * 240.00519 * 2 1 3 34 34 H 1.08997 * 109.47305 * 119.99962 * 2 1 3 35 35 H 1.09000 * 109.88289 * 59.57513 * 8 7 5 36 36 H 1.08994 * 109.88493 * 298.40345 * 8 7 5 37 37 H 1.09002 * 110.72256 * 219.44323 * 9 8 7 38 38 H 1.08998 * 110.87424 * 96.24511 * 9 8 7 39 39 H 1.09001 * 109.46758 * 189.58489 * 12 10 9 40 40 H 1.09008 * 109.46782 * 309.58187 * 12 10 9 41 41 H 1.00894 * 110.99500 * 303.95514 * 13 12 10 42 42 H 1.08998 * 109.47079 * 299.99838 * 14 13 12 43 43 H 1.08993 * 109.47214 * 59.99841 * 14 13 12 44 44 H 0.97001 * 119.99600 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00295 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36255 * 85.24759 * 26 7 5 47 47 H 1.09000 * 110.37085 * 322.92529 * 26 7 5 48 48 H 1.08999 * 109.47219 * 64.76640 * 28 27 3 49 49 H 1.09006 * 109.47580 * 184.76568 * 28 27 3 50 50 H 1.08998 * 109.47519 * 304.76272 * 28 27 3 51 51 H 1.09000 * 109.47104 * 66.82706 * 29 27 3 52 52 H 1.08995 * 109.47273 * 186.82570 * 29 27 3 53 53 H 1.09003 * 109.46949 * 306.82454 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4437 0.0848 5 6 1.4441 2.1859 1.1677 6 8 0.4448 2.8557 1.0140 7 7 2.0219 2.1064 2.3828 8 6 3.1642 1.2502 2.7340 9 6 3.4927 1.5111 4.2191 10 6 2.8796 2.9143 4.4694 11 1 3.5573 3.7014 4.1389 12 6 2.5096 3.0962 5.9428 13 7 3.7349 3.1833 6.7483 14 6 3.4177 3.3581 8.1720 15 6 4.6965 3.4439 8.9646 16 8 5.7669 3.3674 8.3992 17 7 4.6510 3.6066 10.3018 18 6 5.8143 3.6851 11.0228 19 1 6.7673 3.6162 10.5195 20 6 5.7673 3.8523 12.4014 21 7 6.8824 3.9271 13.0927 22 14 4.1189 3.9708 13.2722 23 1 3.6711 2.6122 13.6712 24 1 4.2579 4.8212 14.4816 25 1 3.1172 4.5729 12.3561 26 6 1.6123 2.8630 3.5800 27 7 1.6457 2.1013 -1.2524 28 6 2.2827 3.4190 -1.3773 29 6 1.9553 1.2549 -2.4125 30 1 -0.3634 0.5800 0.8482 31 1 -0.3634 0.4446 -0.9265 32 1 -0.3633 -1.0247 0.0781 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.0235 1.5056 2.1139 36 1 2.8998 0.2025 2.5914 37 1 4.5709 1.5275 4.3785 38 1 3.0212 0.7646 4.8582 39 1 1.9307 4.0122 6.0616 40 1 1.9155 2.2451 6.2760 41 1 4.3199 2.3738 6.6052 42 1 2.8450 4.2757 8.3066 43 1 2.8302 2.5087 8.5202 44 1 3.7950 3.6688 10.7539 45 1 6.8496 4.0442 14.0551 46 1 0.8057 2.3448 4.0986 47 1 1.3014 3.8706 3.3041 48 1 3.3627 3.2946 -1.4556 49 1 1.9090 3.9202 -2.2702 50 1 2.0491 4.0203 -0.4986 51 1 1.3254 0.3656 -2.3919 52 1 1.7667 1.8126 -3.3298 53 1 3.0037 0.9585 -2.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267046447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:06 Heat of formation + Delta-G solvation = -52.669984 kcal Electronic energy + Delta-G solvation = -29879.569418 eV Core-core repulsion = 25786.615969 eV Total energy + Delta-G solvation = -4092.953449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79322 -38.89347 -38.34526 -37.10930 -35.48519 -33.94905 -33.48557 -31.99038 -31.62944 -29.80821 -28.65901 -27.69862 -27.09719 -24.94287 -23.68159 -23.59941 -23.05151 -21.47026 -20.54260 -19.38996 -19.12208 -18.36080 -17.59393 -17.07055 -16.40026 -16.07587 -15.69112 -15.53697 -15.35751 -15.04365 -14.75451 -14.32294 -14.15235 -13.98783 -13.84354 -13.64441 -13.45111 -13.23518 -13.04306 -12.97367 -12.77980 -12.72856 -12.50076 -12.41249 -12.30884 -12.05159 -11.95509 -11.81956 -11.69161 -11.42250 -11.34659 -11.22522 -11.18279 -10.97363 -10.88092 -10.61013 -9.99455 -9.92715 -9.59215 -8.92017 -8.73358 -8.62550 -8.22792 -8.17319 -6.32899 -3.84456 2.35446 2.55844 3.01519 3.05226 3.13920 3.50835 3.71778 3.90803 4.07991 4.10300 4.24718 4.40156 4.44629 4.53633 4.67308 4.73336 4.81786 4.88537 4.92327 4.96321 5.03654 5.08483 5.10916 5.14521 5.19914 5.22757 5.28637 5.35010 5.41472 5.45344 5.49507 5.55830 5.58598 5.59535 5.61182 5.63421 5.72178 5.78374 5.83914 5.90571 5.96100 6.06806 6.09355 6.46948 6.56002 7.03492 7.22569 7.52403 7.56471 7.95112 8.12483 8.57769 8.93016 9.40511 9.80489 10.80157 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.031248 B = 0.001653 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.843116 B =16935.326959 C =17110.516949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.071 3.929 4 H 0.061 0.939 5 C 0.537 3.463 6 O -0.516 6.516 7 N -0.622 5.622 8 C 0.100 3.900 9 C -0.132 4.132 10 C -0.097 4.097 11 H 0.097 0.903 12 C 0.070 3.930 13 N -0.667 5.667 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.565 6.565 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.114 3.886 27 N -0.523 5.523 28 C 0.024 3.976 29 C 0.022 3.978 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.031 0.969 41 H 0.350 0.650 42 H 0.088 0.912 43 H 0.045 0.955 44 H 0.371 0.629 45 H 0.273 0.727 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.025 0.975 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.071 0.929 53 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.206 -8.364 -27.020 31.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.041 4.041 4 H 0.078 0.922 5 C 0.324 3.676 6 O -0.391 6.391 7 N -0.358 5.358 8 C -0.023 4.023 9 C -0.170 4.170 10 C -0.117 4.117 11 H 0.115 0.885 12 C -0.060 4.060 13 N -0.300 5.300 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.447 6.447 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.009 4.009 27 N -0.247 5.247 28 C -0.124 4.124 29 C -0.126 4.126 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.170 0.830 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.093 0.907 52 H 0.090 0.910 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -13.370 -7.278 -27.468 31.404 hybrid contribution -0.523 -0.866 1.216 1.582 sum -13.893 -8.144 -26.252 30.798 Atomic orbital electron populations 1.21727 0.94128 1.01051 1.03582 1.21631 0.98096 0.92834 1.02964 1.21661 0.97933 0.94941 0.89585 0.92174 1.20020 0.83878 0.81521 0.82165 1.90715 1.23935 1.40987 1.83416 1.48534 1.33660 1.43913 1.09656 1.22095 0.88714 0.94530 0.96940 1.22760 1.02770 0.97192 0.94272 1.22383 0.96541 0.98012 0.94727 0.88486 1.21852 0.92096 1.00811 0.91211 1.60031 1.16180 1.48071 1.05735 1.21706 0.96745 1.01498 0.88550 1.19706 0.90244 0.84079 0.82464 1.90561 1.30682 1.54011 1.69460 1.42210 1.08293 1.66137 1.06326 1.19431 0.86941 1.47316 0.89757 0.86280 1.25042 0.97356 0.97596 0.96157 1.69622 1.26055 1.48731 1.07679 0.86668 0.83516 0.78876 0.80305 1.19669 1.20150 1.19459 1.22203 0.96725 0.97038 0.84924 1.61647 1.59140 1.03382 1.00556 1.22434 0.95995 0.90574 1.03417 1.22488 0.99100 0.98102 0.92864 0.92363 0.91397 0.93030 0.90365 0.91101 0.91385 0.91342 0.89092 0.90452 0.90579 0.95091 0.83017 0.89401 0.93727 0.79677 0.91601 0.91384 0.90262 0.95676 0.90830 0.91124 0.90656 0.91020 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.32 37.16 0.35 -0.85 16 2 C -0.12 -0.78 5.19 -26.73 -0.14 -0.92 16 3 C 0.07 0.58 1.64 -68.87 -0.11 0.47 16 4 H 0.06 0.44 7.26 -51.93 -0.38 0.06 16 5 C 0.54 5.81 4.91 -10.99 -0.05 5.75 16 6 O -0.52 -7.45 15.59 5.55 0.09 -7.36 16 7 N -0.62 -5.82 3.33 -170.52 -0.57 -6.39 16 8 C 0.10 0.71 6.31 -3.07 -0.02 0.69 16 9 C -0.13 -1.02 5.75 -24.89 -0.14 -1.16 16 10 C -0.10 -0.88 3.27 -88.47 -0.29 -1.17 16 11 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 12 C 0.07 0.73 5.19 -3.82 -0.02 0.71 16 13 N -0.67 -9.55 6.13 -115.06 -0.70 -10.25 16 14 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 15 C 0.45 9.98 7.82 -10.98 -0.09 9.89 16 16 O -0.57 -14.88 15.78 5.55 0.09 -14.79 16 17 N -0.59 -13.86 5.09 -10.97 -0.06 -13.91 16 18 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 19 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.56 13.96 55.50 0.77 -24.78 16 22 Si 0.88 19.17 27.74 -169.99 -4.71 14.46 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.98 16 26 C 0.11 1.07 6.36 -2.53 -0.02 1.05 16 27 N -0.52 -4.51 4.05 -244.59 -0.99 -5.50 16 28 C 0.02 0.20 9.32 60.06 0.56 0.76 16 29 C 0.02 0.13 8.55 60.06 0.51 0.65 16 30 H 0.06 0.61 6.48 -51.93 -0.34 0.27 16 31 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.41 6.17 -51.93 -0.32 0.09 16 34 H 0.07 0.41 7.01 -51.93 -0.36 0.05 16 35 H 0.07 0.43 7.70 -51.93 -0.40 0.03 16 36 H 0.07 0.40 7.03 -51.93 -0.36 0.03 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.57 7.96 -51.93 -0.41 0.15 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.29 8.04 -51.92 -0.42 -0.12 16 41 H 0.35 5.10 7.80 -39.30 -0.31 4.80 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 47 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 48 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 49 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 50 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16 51 H 0.07 0.40 5.97 -51.93 -0.31 0.09 16 52 H 0.07 0.37 8.06 -51.93 -0.42 -0.04 16 53 H 0.03 0.14 8.11 -51.93 -0.42 -0.28 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -34.47 412.33 -8.81 -43.28 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -9.20 Total: 10.14 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 0.26 Total: 8.90 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -1.54 Total: -60.84 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.17 Total: -22.15 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.46 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.47 -8.81 -43.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267046447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.391 kcal (2) G-P(sol) polarization free energy of solvation -34.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds