Wall clock time and date at job start Sat Apr 11 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46808 * 2 1 4 4 H 1.09000 * 109.46974 * 175.26660 * 3 2 1 5 5 C 1.50701 * 109.47051 * 55.27024 * 3 2 1 6 6 O 1.21283 * 119.99744 * 264.41829 * 5 3 2 7 7 N 1.34777 * 120.00057 * 84.42179 * 5 3 2 8 8 C 1.47019 * 125.64704 * 354.70379 * 7 5 3 9 9 C 1.54325 * 107.26781 * 178.98699 * 8 7 5 10 10 C 1.55160 * 102.94561 * 337.80621 * 9 8 7 11 11 H 1.09001 * 111.00347 * 277.43088 * 10 9 8 12 12 C 1.53001 * 111.00405 * 153.61580 * 10 9 8 13 13 N 1.46899 * 109.47364 * 69.58252 * 12 10 9 14 14 C 1.46898 * 110.99901 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46822 * 180.02562 * 14 13 12 16 16 O 1.21291 * 120.00460 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00101 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00213 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00072 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99798 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99970 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00264 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46928 * 90.00173 * 22 20 18 24 24 H 1.48500 * 109.47318 * 210.00080 * 22 20 18 25 25 H 1.48501 * 109.47409 * 330.00661 * 22 20 18 26 26 C 1.47426 * 125.64690 * 174.75630 * 7 5 3 27 27 N 1.46899 * 109.47448 * 295.26860 * 3 2 1 28 28 C 1.46893 * 111.00126 * 188.35291 * 27 3 2 29 29 C 1.46900 * 110.99924 * 312.30714 * 27 3 2 30 30 H 1.08994 * 109.47729 * 304.36236 * 1 2 3 31 31 H 1.09003 * 109.47371 * 64.36640 * 1 2 3 32 32 H 1.09002 * 109.46659 * 184.35927 * 1 2 3 33 33 H 1.09000 * 109.47182 * 240.00519 * 2 1 3 34 34 H 1.08997 * 109.47305 * 119.99962 * 2 1 3 35 35 H 1.09000 * 109.88289 * 59.57513 * 8 7 5 36 36 H 1.08994 * 109.88493 * 298.40345 * 8 7 5 37 37 H 1.09002 * 110.72256 * 219.44323 * 9 8 7 38 38 H 1.08998 * 110.87424 * 96.24511 * 9 8 7 39 39 H 1.09001 * 109.46758 * 189.58489 * 12 10 9 40 40 H 1.09008 * 109.46782 * 309.58187 * 12 10 9 41 41 H 1.00894 * 110.99500 * 303.95514 * 13 12 10 42 42 H 1.08998 * 109.47079 * 299.99838 * 14 13 12 43 43 H 1.08993 * 109.47214 * 59.99841 * 14 13 12 44 44 H 0.97001 * 119.99600 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00295 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.36255 * 85.24759 * 26 7 5 47 47 H 1.09000 * 110.37085 * 322.92529 * 26 7 5 48 48 H 1.08999 * 109.47219 * 64.76640 * 28 27 3 49 49 H 1.09006 * 109.47580 * 184.76568 * 28 27 3 50 50 H 1.08998 * 109.47519 * 304.76272 * 28 27 3 51 51 H 1.09000 * 109.47104 * 66.82706 * 29 27 3 52 52 H 1.08995 * 109.47273 * 186.82570 * 29 27 3 53 53 H 1.09003 * 109.46949 * 306.82454 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1266 1.4437 0.0848 5 6 1.4441 2.1859 1.1677 6 8 0.4448 2.8557 1.0140 7 7 2.0219 2.1064 2.3828 8 6 3.1642 1.2502 2.7340 9 6 3.4927 1.5111 4.2191 10 6 2.8796 2.9143 4.4694 11 1 3.5573 3.7014 4.1389 12 6 2.5096 3.0962 5.9428 13 7 3.7349 3.1833 6.7483 14 6 3.4177 3.3581 8.1720 15 6 4.6965 3.4439 8.9646 16 8 5.7669 3.3674 8.3992 17 7 4.6510 3.6066 10.3018 18 6 5.8143 3.6851 11.0228 19 1 6.7673 3.6162 10.5195 20 6 5.7673 3.8523 12.4014 21 7 6.8824 3.9271 13.0927 22 14 4.1189 3.9708 13.2722 23 1 3.6711 2.6122 13.6712 24 1 4.2579 4.8212 14.4816 25 1 3.1172 4.5729 12.3561 26 6 1.6123 2.8630 3.5800 27 7 1.6457 2.1013 -1.2524 28 6 2.2827 3.4190 -1.3773 29 6 1.9553 1.2549 -2.4125 30 1 -0.3634 0.5800 0.8482 31 1 -0.3634 0.4446 -0.9265 32 1 -0.3633 -1.0247 0.0781 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 4.0235 1.5056 2.1139 36 1 2.8998 0.2025 2.5914 37 1 4.5709 1.5275 4.3785 38 1 3.0212 0.7646 4.8582 39 1 1.9307 4.0122 6.0616 40 1 1.9155 2.2451 6.2760 41 1 4.3199 2.3738 6.6052 42 1 2.8450 4.2757 8.3066 43 1 2.8302 2.5087 8.5202 44 1 3.7950 3.6688 10.7539 45 1 6.8496 4.0442 14.0551 46 1 0.8057 2.3448 4.0986 47 1 1.3014 3.8706 3.3041 48 1 3.3627 3.2946 -1.4556 49 1 1.9090 3.9202 -2.2702 50 1 2.0491 4.0203 -0.4986 51 1 1.3254 0.3656 -2.3919 52 1 1.7667 1.8126 -3.3298 53 1 3.0037 0.9585 -2.3765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267046447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:05 Heat of formation + Delta-G solvation = -80.303607 kcal Electronic energy + Delta-G solvation = -29880.767702 eV Core-core repulsion = 25786.615969 eV Total energy + Delta-G solvation = -4094.151733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52512 -40.31291 -39.40125 -37.88777 -36.62891 -35.84640 -34.11718 -33.74203 -32.80836 -30.50812 -29.44933 -28.49616 -28.08537 -26.38648 -24.68053 -24.26316 -23.97709 -22.11118 -21.41770 -21.15297 -20.23014 -19.80285 -18.29572 -18.05326 -17.51549 -17.11050 -16.76362 -16.64172 -16.26405 -16.20437 -15.85027 -15.49798 -15.04120 -14.93141 -14.75830 -14.70282 -14.52296 -14.32330 -14.18129 -13.98372 -13.73753 -13.59023 -13.40730 -13.28603 -13.23937 -13.09014 -12.99485 -12.71475 -12.58202 -12.40750 -12.36947 -12.11701 -12.00640 -11.96565 -11.84650 -11.68541 -11.58404 -11.50013 -10.73566 -10.42577 -10.23934 -9.66757 -9.30754 -9.30137 -8.40555 -6.01405 1.31482 1.36183 1.45446 1.57991 1.86068 1.97037 2.23778 2.72535 2.93979 3.16198 3.30619 3.45423 3.58978 3.76868 3.84320 3.94005 4.01278 4.17844 4.19378 4.25961 4.33222 4.36038 4.38679 4.40518 4.45854 4.55527 4.55802 4.57182 4.59876 4.69970 4.73453 4.74863 4.86085 4.90866 4.94127 4.95926 4.99157 5.06798 5.11114 5.14983 5.24840 5.36059 5.44112 5.53437 5.88597 5.91452 6.03102 6.05550 6.43076 6.50378 6.60709 6.89070 7.17544 7.40962 7.97452 8.76996 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.031248 B = 0.001653 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.843116 B =16935.326959 C =17110.516949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.073 3.927 4 H 0.074 0.926 5 C 0.532 3.468 6 O -0.562 6.562 7 N -0.623 5.623 8 C 0.100 3.900 9 C -0.128 4.128 10 C -0.089 4.089 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.686 5.686 14 C 0.062 3.938 15 C 0.448 3.552 16 O -0.614 6.614 17 N -0.591 5.591 18 C -0.329 4.329 19 H 0.056 0.944 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.231 1.231 26 C 0.116 3.884 27 N -0.544 5.544 28 C 0.028 3.972 29 C 0.023 3.977 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.347 0.653 42 H 0.112 0.888 43 H 0.080 0.920 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.036 0.964 49 H 0.079 0.921 50 H 0.044 0.956 51 H 0.082 0.918 52 H 0.076 0.924 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.750 -9.846 -27.559 33.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.039 4.039 4 H 0.092 0.908 5 C 0.321 3.679 6 O -0.440 6.440 7 N -0.357 5.357 8 C -0.022 4.022 9 C -0.166 4.166 10 C -0.109 4.109 11 H 0.099 0.901 12 C -0.054 4.054 13 N -0.319 5.319 14 C -0.071 4.071 15 C 0.236 3.764 16 O -0.498 6.498 17 N -0.233 5.233 18 C -0.458 4.458 19 H 0.074 0.926 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.181 1.181 24 H -0.202 1.202 25 H -0.155 1.155 26 C -0.007 4.007 27 N -0.269 5.269 28 C -0.120 4.120 29 C -0.124 4.124 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.097 0.903 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.063 0.937 51 H 0.100 0.900 52 H 0.095 0.905 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -15.916 -8.776 -28.029 33.406 hybrid contribution 0.374 -0.402 1.284 1.397 sum -15.542 -9.178 -26.745 32.266 Atomic orbital electron populations 1.21656 0.95377 1.01250 1.01687 1.21672 0.96841 0.91961 1.04624 1.21699 0.98391 0.95323 0.88439 0.90846 1.20563 0.83343 0.81003 0.82993 1.90685 1.26057 1.43078 1.84167 1.48632 1.33944 1.43830 1.09334 1.22245 0.88218 0.95169 0.96610 1.22746 1.02613 0.96317 0.94878 1.22222 0.96123 0.98556 0.93996 0.90060 1.21879 0.90656 1.01879 0.90996 1.60009 1.18177 1.48431 1.05291 1.21626 0.92932 1.04128 0.88392 1.21019 0.92053 0.81130 0.82196 1.90540 1.33528 1.55330 1.70425 1.42042 1.07543 1.66914 1.06819 1.19014 0.86626 1.49494 0.90701 0.92628 1.26114 1.02749 0.96096 0.96413 1.69806 1.29572 1.49761 1.08368 0.85366 0.77585 0.79739 0.78842 1.18070 1.20180 1.15468 1.22134 0.96955 0.96441 0.85172 1.61620 1.59903 1.03877 1.01535 1.22358 0.96707 0.90524 1.02430 1.22536 0.99949 0.97973 0.91963 0.95189 0.92518 0.91509 0.88262 0.89788 0.90406 0.89338 0.89295 0.89502 0.90132 0.93133 0.83401 0.87029 0.90250 0.77470 0.91178 0.90804 0.91847 0.94515 0.90206 0.93731 0.89990 0.90519 0.94237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.32 71.98 0.67 -1.47 16 2 C -0.11 -1.24 5.19 30.59 0.16 -1.08 16 3 C 0.07 1.10 1.64 44.17 0.07 1.17 16 4 H 0.07 0.90 7.26 -2.39 -0.02 0.88 16 5 C 0.53 11.32 4.91 87.66 0.43 11.75 16 6 O -0.56 -16.72 15.59 -3.04 -0.05 -16.77 16 7 N -0.62 -11.00 3.33 -811.80 -2.70 -13.70 16 8 C 0.10 1.18 6.31 86.73 0.55 1.73 16 9 C -0.13 -1.70 5.75 31.78 0.18 -1.51 16 10 C -0.09 -1.50 3.27 -9.40 -0.03 -1.53 16 11 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 12 C 0.07 1.36 5.19 86.30 0.45 1.81 16 13 N -0.69 -18.26 6.13 -517.94 -3.17 -21.43 16 14 C 0.06 1.76 6.17 85.56 0.53 2.29 16 15 C 0.45 19.64 7.82 87.65 0.69 20.32 16 16 O -0.61 -33.23 15.78 -3.06 -0.05 -33.28 16 17 N -0.59 -27.34 5.09 -306.99 -1.56 -28.91 16 18 C -0.33 -19.10 10.16 84.04 0.85 -18.25 16 19 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 21 N -0.93 -56.00 13.96 21.66 0.30 -55.70 16 22 Si 0.96 38.28 27.74 68.60 1.90 40.18 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 26 C 0.12 2.08 6.36 86.85 0.55 2.63 16 27 N -0.54 -8.87 4.05 -927.75 -3.76 -12.63 16 28 C 0.03 0.45 9.32 127.69 1.19 1.64 16 29 C 0.02 0.23 8.55 127.69 1.09 1.32 16 30 H 0.03 0.62 6.48 -2.39 -0.02 0.60 16 31 H 0.06 0.96 7.31 -2.39 -0.02 0.95 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.70 6.17 -2.39 -0.01 0.69 16 34 H 0.08 0.71 7.01 -2.39 -0.02 0.69 16 35 H 0.08 0.80 7.70 -2.39 -0.02 0.78 16 36 H 0.09 0.74 7.03 -2.39 -0.02 0.72 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.02 7.96 -2.39 -0.02 1.00 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 0.76 8.04 -2.38 -0.02 0.74 16 41 H 0.35 9.61 7.80 -89.70 -0.70 8.91 16 42 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 45 H 0.28 15.27 8.31 -92.71 -0.77 14.49 16 46 H 0.07 1.24 8.04 -2.38 -0.02 1.22 16 47 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 48 H 0.04 0.48 8.14 -2.39 -0.02 0.47 16 49 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16 50 H 0.04 0.94 6.86 -2.39 -0.02 0.93 16 51 H 0.08 0.69 5.97 -2.39 -0.01 0.68 16 52 H 0.08 0.67 8.06 -2.39 -0.02 0.65 16 53 H 0.04 0.30 8.11 -2.39 -0.02 0.28 16 Total: -1.00 -81.63 412.33 -1.62 -83.25 By element: Atomic # 1 Polarization: 38.90 SS G_CDS: -0.38 Total: 38.52 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.85 Total: 20.46 kcal Atomic # 7 Polarization: -121.47 SS G_CDS: -10.89 Total: -132.36 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.10 Total: -50.05 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 1.90 Total: 40.18 kcal Total: -81.63 -1.62 -83.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267046447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.944 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds