Wall clock time and date at job start Sat Apr 11 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47095 * 2 1 4 4 N 1.46895 * 109.46895 * 119.99812 * 2 1 3 5 5 C 1.46898 * 111.00192 * 56.04627 * 4 2 1 6 6 C 1.46911 * 110.99868 * 179.97438 * 4 2 1 7 7 C 1.50698 * 109.46870 * 170.00277 * 6 4 2 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 4 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 4 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31404 * 119.99930 * 180.27381 * 23 21 20 25 25 Si 1.86803 * 119.99892 * 0.27596 * 23 21 20 26 26 H 1.48501 * 109.47166 * 89.99916 * 25 23 21 27 27 H 1.48504 * 109.46934 * 209.99969 * 25 23 21 28 28 H 1.48497 * 109.47285 * 330.00014 * 25 23 21 29 29 H 1.09008 * 109.47206 * 300.00598 * 1 2 3 30 30 H 1.09005 * 109.47481 * 59.99750 * 1 2 3 31 31 H 1.08995 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47167 * 239.99940 * 2 1 3 33 33 H 1.08996 * 109.47533 * 60.00319 * 3 2 1 34 34 H 1.09007 * 109.47351 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47217 * 299.99673 * 3 2 1 36 36 H 1.09003 * 109.47274 * 183.94909 * 5 4 2 37 37 H 1.09002 * 109.47299 * 303.95211 * 5 4 2 38 38 H 1.09006 * 109.46888 * 63.95230 * 5 4 2 39 39 H 1.09000 * 109.46335 * 50.00412 * 6 4 2 40 40 H 1.08996 * 109.47294 * 290.00253 * 6 4 2 41 41 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 42 42 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 43 43 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 44 44 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 45 45 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 46 46 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 47 47 H 1.08999 * 110.30568 * 140.87177 * 14 13 11 48 48 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 49 49 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 50 50 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 51 51 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 52 52 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 53 53 H 0.97000 * 119.99893 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.4729 -2.0534 1.2817 6 6 3.4881 -0.7126 1.2331 7 6 3.9530 -1.2050 2.5794 8 8 3.1410 -1.5087 3.4275 9 7 5.2712 -1.3068 2.8413 10 6 5.7231 -1.7849 4.1502 11 6 7.2434 -1.6439 4.2476 12 1 7.7339 -2.1888 3.4409 13 6 7.7510 -2.1349 5.6266 14 6 9.0873 -1.3757 5.7936 15 6 8.9762 -0.1560 4.8601 16 7 7.6394 -0.2125 4.2297 17 6 7.6833 0.3046 2.8554 18 6 8.5687 -0.5786 2.0145 19 8 9.2101 -1.4664 2.5354 20 7 8.6478 -0.3818 0.6835 21 6 9.4538 -1.1849 -0.0814 22 1 10.0255 -1.9750 0.3826 23 6 9.5310 -0.9857 -1.4544 24 7 10.2993 -1.7589 -2.1883 25 14 8.5426 0.3812 -2.2569 26 1 9.3501 1.6273 -2.2812 27 1 8.1941 -0.0100 -3.6465 28 1 7.2978 0.6131 -1.4811 29 1 -0.3634 0.5140 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.7948 -2.5186 2.2134 37 1 0.3841 -2.0099 1.2545 38 1 1.8342 -2.6417 0.4381 39 1 3.8692 0.2944 1.0630 40 1 3.8603 -1.3783 0.4544 41 1 5.9206 -1.0635 2.1631 42 1 5.4470 -2.8327 4.2694 43 1 5.2523 -1.1935 4.9355 44 1 7.9182 -3.2121 5.6149 45 1 7.0515 -1.8633 6.4172 46 1 9.9221 -2.0082 5.4918 47 1 9.2115 -1.0513 6.8267 48 1 9.7502 -0.2028 4.0942 49 1 9.0773 0.7651 5.4342 50 1 8.0822 1.3188 2.8613 51 1 6.6764 0.3125 2.4379 52 1 8.1346 0.3280 0.2668 53 1 10.3529 -1.6201 -3.1468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267282248.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:17 Heat of formation + Delta-G solvation = -62.733144 kcal Electronic energy + Delta-G solvation = -31881.332380 eV Core-core repulsion = 27787.942559 eV Total energy + Delta-G solvation = -4093.389821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65344 -40.74474 -39.03033 -38.51524 -36.03390 -35.61058 -33.86291 -33.20860 -33.05975 -31.36247 -29.80610 -28.42735 -27.48756 -26.23240 -25.72534 -24.80721 -22.20793 -21.88846 -21.33659 -21.17239 -20.81867 -20.04979 -18.40524 -17.93270 -17.37203 -17.06147 -16.91568 -16.74736 -16.23527 -16.12151 -15.84325 -15.73942 -15.46048 -15.22494 -15.12446 -14.71996 -14.55170 -14.32407 -14.00205 -13.78320 -13.46004 -13.42962 -13.19461 -13.10914 -12.90185 -12.81411 -12.70716 -12.54416 -12.41435 -12.35613 -12.22938 -12.10354 -12.01248 -11.96187 -11.94881 -11.63921 -11.55389 -11.20990 -10.97318 -10.76010 -10.21623 -10.04995 -9.30295 -9.18510 -8.43088 -6.03561 1.27814 1.33994 1.43038 1.63311 1.85070 2.05112 2.21253 2.87614 2.95098 2.99134 3.13769 3.66694 3.77601 3.79644 3.94559 4.03908 4.06245 4.15594 4.25446 4.26853 4.31209 4.37277 4.43107 4.45069 4.52812 4.57259 4.58827 4.62223 4.76106 4.80768 4.83806 4.92302 4.95522 4.96684 5.03962 5.08691 5.10793 5.13554 5.25054 5.32267 5.39918 5.40915 5.44738 5.50588 5.86377 5.86555 5.92490 5.99868 6.12928 6.47387 6.54068 6.85283 7.22464 7.35193 7.88799 8.73862 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007276 B = 0.004627 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3847.573829 B = 6050.610462 C = 9069.256541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 C -0.148 4.148 4 N -0.530 5.530 5 C 0.018 3.982 6 C 0.027 3.973 7 C 0.514 3.486 8 O -0.557 6.557 9 N -0.727 5.727 10 C 0.144 3.856 11 C 0.031 3.969 12 H 0.070 0.930 13 C -0.105 4.105 14 C -0.117 4.117 15 C 0.032 3.968 16 N -0.479 5.479 17 C 0.027 3.973 18 C 0.416 3.584 19 O -0.600 6.600 20 N -0.583 5.583 21 C -0.324 4.324 22 H 0.057 0.943 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.955 3.045 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.222 1.222 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.023 0.977 39 H 0.126 0.874 40 H 0.069 0.931 41 H 0.400 0.600 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.036 0.964 49 H 0.090 0.910 50 H 0.122 0.878 51 H 0.112 0.888 52 H 0.388 0.612 53 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 8.003 6.600 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.206 4.206 4 N -0.256 5.256 5 C -0.130 4.130 6 C -0.104 4.104 7 C 0.301 3.699 8 O -0.436 6.436 9 N -0.381 5.381 10 C 0.020 3.980 11 C -0.077 4.077 12 H 0.087 0.913 13 C -0.143 4.143 14 C -0.155 4.155 15 C -0.096 4.096 16 N -0.202 5.202 17 C -0.106 4.106 18 C 0.204 3.796 19 O -0.486 6.486 20 N -0.224 5.224 21 C -0.454 4.454 22 H 0.075 0.925 23 C -0.210 4.210 24 N -0.572 5.572 25 Si 0.775 3.225 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.145 1.145 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.144 0.856 40 H 0.087 0.913 41 H 0.238 0.762 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.055 0.945 49 H 0.108 0.892 50 H 0.140 0.860 51 H 0.129 0.871 52 H 0.224 0.776 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.920 7.728 8.063 20.273 hybrid contribution 1.490 -0.718 -2.488 2.987 sum -15.430 7.010 5.575 17.841 Atomic orbital electron populations 1.21881 0.93100 1.02290 1.02725 1.21802 0.96775 0.95495 0.89710 1.21937 1.01199 0.94520 1.02903 1.61770 1.05332 1.18284 1.40174 1.22552 1.01341 0.88302 1.00807 1.22152 0.90542 1.04215 0.93461 1.20878 0.81847 0.77150 0.90073 1.90629 1.53722 1.50165 1.49047 1.46380 1.07156 1.67616 1.16997 1.21252 0.92820 0.99053 0.84849 1.23362 0.93900 0.90114 1.00334 0.91252 1.22339 0.96989 0.99846 0.95153 1.22222 0.97236 0.96028 1.00054 1.22891 0.89995 0.99422 0.97262 1.65182 1.24596 1.16983 1.13391 1.22561 0.99754 0.99443 0.88799 1.21942 0.86865 0.88014 0.82828 1.90521 1.49200 1.36817 1.72040 1.42229 1.41673 1.31354 1.07154 1.18975 1.22777 1.13363 0.90247 0.92477 1.26075 0.98213 1.00611 0.96147 1.69798 1.39730 1.40434 1.07241 0.85508 0.80085 0.78077 0.78845 1.18506 1.20373 1.14509 0.92252 0.90553 0.92403 0.94005 0.92093 0.92330 0.90484 0.91753 0.89807 0.95875 0.85593 0.91270 0.76245 0.91895 0.90521 0.91052 0.89205 0.93253 0.89125 0.94507 0.89199 0.86046 0.87055 0.77599 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.84 71.98 0.64 -1.48 16 2 C 0.07 1.23 2.67 44.91 0.12 1.35 16 3 C -0.15 -2.24 8.99 71.98 0.65 -1.60 16 4 N -0.53 -11.98 4.37 -901.61 -3.94 -15.91 16 5 C 0.02 0.41 8.84 127.69 1.13 1.53 16 6 C 0.03 0.61 5.26 85.55 0.45 1.06 16 7 C 0.51 14.37 7.55 87.66 0.66 15.03 16 8 O -0.56 -18.96 14.29 -3.04 -0.04 -19.00 16 9 N -0.73 -19.72 4.68 -463.06 -2.17 -21.89 16 10 C 0.14 3.99 5.41 86.38 0.47 4.46 16 11 C 0.03 0.93 2.18 45.26 0.10 1.03 16 12 H 0.07 2.66 5.05 -2.38 -0.01 2.65 16 13 C -0.10 -2.65 6.50 31.80 0.21 -2.45 16 14 C -0.12 -3.05 6.93 31.47 0.22 -2.84 16 15 C 0.03 0.92 6.01 86.44 0.52 1.44 16 16 N -0.48 -13.54 5.23 -862.81 -4.51 -18.05 16 17 C 0.03 0.77 5.32 85.56 0.46 1.22 16 18 C 0.42 16.44 6.34 87.66 0.56 16.99 16 19 O -0.60 -28.67 11.37 -3.06 -0.03 -28.71 16 20 N -0.58 -24.52 5.09 -306.97 -1.56 -26.08 16 21 C -0.32 -17.55 10.16 84.04 0.85 -16.69 16 22 H 0.06 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 24 N -0.93 -53.78 13.96 21.66 0.30 -53.48 16 25 Si 0.95 35.82 27.74 68.60 1.90 37.72 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 27 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 28 H -0.22 -6.59 6.51 99.48 0.65 -5.94 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.85 6.26 -2.39 -0.01 0.83 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 0.86 6.20 -2.38 -0.01 0.85 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 37 H 0.08 1.65 6.01 -2.39 -0.01 1.63 16 38 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.13 2.34 5.83 -2.39 -0.01 2.32 16 40 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 41 H 0.40 10.78 5.48 -92.71 -0.51 10.27 16 42 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.08 2.13 8.11 -2.38 -0.02 2.11 16 44 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.09 1.92 8.06 -2.39 -0.02 1.91 16 46 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 1.32 5.79 -2.39 -0.01 1.30 16 49 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 50 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 51 H 0.11 2.68 5.30 -2.38 -0.01 2.66 16 52 H 0.39 13.39 5.76 -92.71 -0.53 12.86 16 53 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -71.26 399.20 -2.74 -74.00 By element: Atomic # 1 Polarization: 52.64 SS G_CDS: -0.17 Total: 52.46 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 7.49 Total: 18.94 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -11.88 Total: -135.42 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -0.08 Total: -47.71 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 1.90 Total: 37.72 kcal Total: -71.26 -2.74 -74.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267282248.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.268 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds