Wall clock time and date at job start Sat Apr 11 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47018 * 2 1 4 4 C 1.53002 * 109.46824 * 240.00041 * 2 1 3 5 5 H 1.09004 * 109.46975 * 175.14135 * 4 2 1 6 6 C 1.50702 * 109.47360 * 55.14756 * 4 2 1 7 7 O 1.21281 * 119.99596 * 255.30632 * 6 4 2 8 8 N 1.34775 * 120.00284 * 75.30251 * 6 4 2 9 9 C 1.46496 * 120.00382 * 183.34540 * 8 6 4 10 10 H 1.09004 * 110.28764 * 324.32874 * 9 8 6 11 11 C 1.54262 * 110.32208 * 86.45254 * 9 8 6 12 12 C 1.54384 * 105.05753 * 118.90006 * 11 9 8 13 13 N 1.48561 * 104.59427 * 23.85129 * 12 11 9 14 14 C 1.46899 * 110.99635 * 200.96038 * 13 12 11 15 15 C 1.50709 * 109.47055 * 290.12418 * 14 13 12 16 16 O 1.21284 * 119.99834 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99628 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99381 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00298 * 359.97438 * 18 17 15 20 20 C 1.38954 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31408 * 120.00378 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99965 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46629 * 90.00264 * 22 20 18 24 24 H 1.48496 * 109.47126 * 210.00084 * 22 20 18 25 25 H 1.48494 * 109.47135 * 330.00786 * 22 20 18 26 26 C 1.48556 * 104.22207 * 320.51927 * 13 12 11 27 27 N 1.46898 * 109.47422 * 295.14445 * 4 2 1 28 28 C 1.46899 * 110.99826 * 187.77418 * 27 4 2 29 29 C 1.46898 * 110.99915 * 311.72524 * 27 4 2 30 30 H 1.08998 * 109.46707 * 183.43513 * 1 2 3 31 31 H 1.08992 * 109.46818 * 303.43262 * 1 2 3 32 32 H 1.08996 * 109.46812 * 63.43744 * 1 2 3 33 33 H 1.09001 * 109.47252 * 120.00220 * 2 1 3 34 34 H 1.09001 * 109.47169 * 291.83242 * 3 2 1 35 35 H 1.08993 * 109.47320 * 51.83387 * 3 2 1 36 36 H 1.09003 * 109.46830 * 171.83508 * 3 2 1 37 37 H 0.97009 * 119.99884 * 3.34876 * 8 6 4 38 38 H 1.08997 * 110.32309 * 237.79453 * 11 9 8 39 39 H 1.08998 * 110.32532 * 0.02562 * 11 9 8 40 40 H 1.08999 * 110.41021 * 142.63527 * 12 11 9 41 41 H 1.08997 * 110.40767 * 264.95547 * 12 11 9 42 42 H 1.08997 * 109.47707 * 50.12623 * 14 13 12 43 43 H 1.08998 * 109.46981 * 170.12721 * 14 13 12 44 44 H 0.96994 * 120.00196 * 0.02562 * 17 15 14 45 45 H 0.96994 * 120.00604 * 179.97438 * 21 20 18 46 46 H 1.09010 * 110.40858 * 280.70255 * 26 13 12 47 47 H 1.09001 * 110.40859 * 158.26343 * 26 13 12 48 48 H 1.09001 * 109.47548 * 64.57139 * 28 27 4 49 49 H 1.09005 * 109.46745 * 184.57376 * 28 27 4 50 50 H 1.09001 * 109.47140 * 304.56554 * 28 27 4 51 51 H 1.08998 * 109.47496 * 66.70983 * 29 27 4 52 52 H 1.08996 * 109.47613 * 186.70952 * 29 27 4 53 53 H 1.09002 * 109.47386 * 306.71555 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 1 3.1265 -0.6465 -1.2939 6 6 1.4419 -0.0837 -2.4768 7 8 0.5467 -0.6420 -3.0751 8 7 1.9017 1.1070 -2.9098 9 6 1.2718 1.7615 -4.0591 10 1 0.9543 1.0180 -4.7902 11 6 0.0678 2.6092 -3.5994 12 6 0.4180 4.0569 -4.0056 13 7 1.3907 3.9084 -5.1186 14 6 2.1867 5.1313 -5.2886 15 6 1.3099 6.2299 -5.8324 16 8 0.1373 6.0153 -6.0559 17 7 1.8290 7.4507 -6.0704 18 6 1.0313 8.4501 -6.5646 19 1 -0.0129 8.2591 -6.7636 20 6 1.5665 9.7087 -6.8105 21 7 0.8021 10.6666 -7.2847 22 14 3.3728 10.0389 -6.4670 23 1 4.1711 9.7353 -7.6818 24 1 3.5539 11.4663 -6.0996 25 1 3.8291 9.1775 -5.3468 26 6 2.2482 2.7682 -4.7044 27 7 1.6484 -2.1359 -1.1922 28 6 2.2748 -2.8998 -2.2793 29 6 1.9729 -2.7196 0.1162 30 1 -0.3633 -1.0258 0.0616 31 1 -0.3633 0.5662 0.8576 32 1 -0.3633 0.4595 -0.9192 33 1 1.8934 -0.5139 0.8900 34 1 1.8008 1.9124 -0.9540 35 1 1.5624 1.9967 0.8079 36 1 3.1202 1.4459 0.1460 37 1 2.6498 1.5305 -2.4603 38 1 -0.8404 2.2829 -4.1062 39 1 -0.0543 2.5386 -2.5186 40 1 -0.4738 4.5820 -4.3475 41 1 0.8730 4.5869 -3.1689 42 1 2.5952 5.4359 -4.3251 43 1 3.0030 4.9396 -5.9851 44 1 2.7669 7.6221 -5.8921 45 1 1.1755 11.5453 -7.4560 46 1 2.9916 3.0961 -3.9776 47 1 2.7344 2.3232 -5.5725 48 1 3.3566 -2.9014 -2.1459 49 1 1.9052 -3.9252 -2.2627 50 1 2.0273 -2.4399 -3.2361 51 1 1.3521 -2.2580 0.8841 52 1 1.7836 -3.7927 0.0925 53 1 3.0240 -2.5410 0.3432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267729646.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:07 Heat of formation + Delta-G solvation = -69.170694 kcal Electronic energy + Delta-G solvation = -30947.018971 eV Core-core repulsion = 26853.349997 eV Total energy + Delta-G solvation = -4093.668974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66356 -40.61049 -39.36846 -38.06269 -36.09849 -35.77987 -34.89727 -33.74909 -32.25825 -29.82646 -28.99057 -28.46103 -27.98088 -27.74649 -25.78314 -23.65242 -22.81930 -22.53928 -21.49990 -21.14345 -20.42555 -20.14900 -18.13724 -17.86876 -17.54460 -17.18844 -16.73331 -16.69003 -16.36704 -16.08835 -15.66488 -15.40621 -15.24074 -14.85152 -14.83604 -14.71164 -14.46749 -14.32558 -14.16814 -13.78579 -13.60213 -13.55584 -13.24510 -13.22998 -13.13596 -12.97772 -12.77623 -12.71152 -12.51466 -12.42227 -12.36400 -12.33739 -11.96883 -11.88403 -11.81134 -11.75812 -11.64628 -11.47952 -10.66579 -10.40777 -10.22933 -10.02775 -9.39455 -9.23940 -8.39716 -6.00718 1.30511 1.37256 1.45791 1.67217 1.97293 1.98994 2.24523 2.71074 2.99182 3.15659 3.25974 3.47642 3.67006 3.77752 3.84333 3.97978 4.04449 4.18272 4.20469 4.24975 4.26774 4.36033 4.40961 4.43480 4.46074 4.50078 4.56839 4.66422 4.69571 4.74721 4.76976 4.79860 4.97211 5.01148 5.02337 5.03080 5.05593 5.08020 5.14012 5.16705 5.40022 5.42831 5.46647 5.54057 5.84317 5.90967 5.94601 6.02147 6.08765 6.59257 6.61626 6.90504 7.32508 7.41735 8.00125 8.78100 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.002055 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.748562 B =13621.165242 C =13759.863415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.165 4.165 4 C 0.075 3.925 5 H 0.083 0.917 6 C 0.521 3.479 7 O -0.559 6.559 8 N -0.711 5.711 9 C 0.151 3.849 10 H 0.079 0.921 11 C -0.122 4.122 12 C 0.041 3.959 13 N -0.512 5.512 14 C 0.045 3.955 15 C 0.450 3.550 16 O -0.609 6.609 17 N -0.592 5.592 18 C -0.327 4.327 19 H 0.052 0.948 20 C -0.019 4.019 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.257 1.257 24 H -0.277 1.277 25 H -0.228 1.228 26 C 0.036 3.964 27 N -0.545 5.545 28 C 0.027 3.973 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.413 0.587 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.390 0.610 45 H 0.278 0.722 46 H 0.081 0.919 47 H 0.101 0.899 48 H 0.038 0.962 49 H 0.074 0.926 50 H 0.049 0.951 51 H 0.078 0.922 52 H 0.074 0.926 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.845 -25.092 20.054 35.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.223 4.223 4 C -0.037 4.037 5 H 0.101 0.899 6 C 0.308 3.692 7 O -0.436 6.436 8 N -0.367 5.367 9 C 0.045 3.955 10 H 0.097 0.903 11 C -0.162 4.162 12 C -0.087 4.087 13 N -0.237 5.237 14 C -0.086 4.086 15 C 0.238 3.762 16 O -0.493 6.493 17 N -0.234 5.234 18 C -0.456 4.456 19 H 0.070 0.930 20 C -0.217 4.217 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.182 1.182 24 H -0.202 1.202 25 H -0.151 1.151 26 C -0.092 4.092 27 N -0.270 5.270 28 C -0.121 4.121 29 C -0.125 4.125 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.143 0.857 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.119 0.881 48 H 0.057 0.943 49 H 0.093 0.907 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.093 0.907 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.611 -25.565 18.822 34.159 hybrid contribution 1.485 1.283 0.441 2.012 sum 14.096 -24.281 19.263 34.049 Atomic orbital electron populations 1.21758 0.95312 1.01925 1.00750 1.21220 0.96117 0.96835 0.95973 1.22166 1.02490 0.94593 1.03069 1.21773 0.98845 0.89736 0.93326 0.89926 1.20854 0.82486 0.80506 0.85365 1.90708 1.31285 1.63457 1.58153 1.46253 1.36751 1.21228 1.32476 1.21391 0.92336 0.93989 0.87744 0.90263 1.22630 0.98552 0.93654 1.01322 1.23024 0.97037 0.96838 0.91794 1.65025 1.13925 1.03800 1.40961 1.22031 0.95244 0.88649 1.02688 1.20927 0.89002 0.83798 0.82501 1.90548 1.19711 1.82330 1.56676 1.42007 1.11413 1.09976 1.60015 1.18977 0.94519 0.90834 1.41265 0.92952 1.26164 1.05062 0.94239 0.96214 1.69810 1.38972 1.03929 1.45021 0.85335 0.76407 0.79134 0.80426 1.18190 1.20175 1.15111 1.23382 0.94558 0.90477 1.00788 1.61584 1.60227 1.00527 1.04648 1.22377 0.96720 0.98844 0.94158 1.22527 0.99862 1.00462 0.89601 0.92576 0.91842 0.95159 0.87852 0.92349 0.91411 0.90205 0.74735 0.92485 0.90053 0.92705 0.92793 0.89447 0.85701 0.77440 0.91208 0.90097 0.88068 0.94326 0.90678 0.93159 0.90330 0.90720 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.67 71.98 0.62 -1.63 16 2 C -0.08 -0.89 2.19 -10.79 -0.02 -0.92 16 3 C -0.17 -1.36 8.73 71.98 0.63 -0.74 16 4 C 0.08 1.01 1.69 44.17 0.07 1.09 16 5 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 6 C 0.52 10.26 4.63 87.66 0.41 10.67 16 7 O -0.56 -16.42 14.89 -3.03 -0.05 -16.47 16 8 N -0.71 -11.03 3.75 -438.31 -1.64 -12.68 16 9 C 0.15 3.19 3.39 45.89 0.16 3.35 16 10 H 0.08 2.06 7.60 -2.39 -0.02 2.04 16 11 C -0.12 -3.10 6.78 31.49 0.21 -2.89 16 12 C 0.04 1.23 5.80 86.45 0.50 1.73 16 13 N -0.51 -14.96 5.06 -886.04 -4.49 -19.45 16 14 C 0.05 1.31 5.30 85.56 0.45 1.76 16 15 C 0.45 20.13 7.59 87.66 0.66 20.79 16 16 O -0.61 -34.03 14.42 -3.04 -0.04 -34.07 16 17 N -0.59 -27.54 5.09 -306.98 -1.56 -29.10 16 18 C -0.33 -19.14 10.16 84.04 0.85 -18.29 16 19 H 0.05 3.69 7.39 -2.91 -0.02 3.66 16 20 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 21 N -0.94 -56.68 13.96 21.66 0.30 -56.38 16 22 Si 0.97 38.19 27.74 68.60 1.90 40.10 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 26 C 0.04 0.67 6.19 86.45 0.54 1.21 16 27 N -0.55 -8.46 4.04 -927.72 -3.75 -12.21 16 28 C 0.03 0.41 9.26 127.69 1.18 1.59 16 29 C 0.02 0.22 8.61 127.69 1.10 1.32 16 30 H 0.06 1.02 7.39 -2.39 -0.02 1.00 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.03 0.65 6.84 -2.39 -0.02 0.63 16 33 H 0.10 0.77 6.16 -2.39 -0.01 0.76 16 34 H 0.06 0.60 5.00 -2.39 -0.01 0.59 16 35 H 0.07 0.57 8.13 -2.39 -0.02 0.55 16 36 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.41 3.80 6.68 -92.70 -0.62 3.19 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.86 7.95 -2.39 -0.02 1.84 16 40 H 0.05 2.17 6.91 -2.39 -0.02 2.15 16 41 H 0.05 1.42 7.83 -2.39 -0.02 1.40 16 42 H 0.09 1.96 7.88 -2.39 -0.02 1.95 16 43 H 0.13 2.86 8.13 -2.39 -0.02 2.84 16 44 H 0.39 14.73 5.76 -92.71 -0.53 14.20 16 45 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.08 1.00 7.59 -2.38 -0.02 0.98 16 47 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 50 H 0.05 1.02 6.51 -2.39 -0.02 1.00 16 51 H 0.08 0.68 6.03 -2.39 -0.01 0.67 16 52 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 53 H 0.04 0.28 8.12 -2.39 -0.02 0.26 16 Total: -1.00 -84.20 405.37 -1.78 -85.99 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.30 Total: 35.80 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 7.84 Total: 18.47 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -11.14 Total: -129.82 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -0.09 Total: -50.54 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.90 Total: 40.10 kcal Total: -84.20 -1.78 -85.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267729646.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.815 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds