Wall clock time and date at job start Sat Apr 11 2020 06:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46876 * 2 1 4 4 N 1.46504 * 109.46995 * 120.00049 * 2 1 3 5 5 C 1.34771 * 119.99420 * 155.00094 * 4 2 1 6 6 O 1.21282 * 120.00440 * 359.97438 * 5 4 2 7 7 C 1.50704 * 119.99570 * 180.02562 * 5 4 2 8 8 N 1.46899 * 109.47089 * 179.97438 * 7 5 4 9 9 C 1.46900 * 111.00141 * 293.95307 * 8 7 5 10 10 C 1.46904 * 111.00061 * 169.99516 * 8 7 5 11 11 C 1.50700 * 109.47192 * 189.99979 * 10 8 7 12 12 O 1.21283 * 119.99803 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99675 * 180.28082 * 11 10 8 14 14 C 1.46496 * 120.00345 * 359.72090 * 13 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 16 16 H 1.08996 * 110.64621 * 358.31372 * 15 13 11 17 17 C 1.55155 * 110.72079 * 234.97048 * 15 13 11 18 18 C 1.54909 * 101.58554 * 277.14221 * 17 15 13 19 19 N 1.47424 * 104.82843 * 322.98896 * 18 17 15 20 20 C 1.36944 * 125.64711 * 204.08969 * 19 18 17 21 21 H 1.07994 * 119.99768 * 180.02562 * 20 19 18 22 22 C 1.38810 * 119.99660 * 0.04359 * 20 19 18 23 23 N 1.31618 * 120.00167 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99675 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47081 * 60.00109 * 24 22 20 26 26 H 1.48500 * 109.46948 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47535 * 300.00096 * 24 22 20 28 28 C 1.47022 * 108.70685 * 24.12881 * 19 18 17 29 29 H 1.09003 * 109.46969 * 299.99762 * 1 2 3 30 30 H 1.08998 * 109.47187 * 59.99779 * 1 2 3 31 31 H 1.08994 * 109.47037 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46892 * 239.99916 * 2 1 3 33 33 H 1.09002 * 109.46810 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46884 * 299.99984 * 3 2 1 35 35 H 1.09003 * 109.47127 * 60.00334 * 3 2 1 36 36 H 0.96996 * 119.99975 * 334.99647 * 4 2 1 37 37 H 1.09003 * 109.47248 * 59.99569 * 7 5 4 38 38 H 1.09004 * 109.46778 * 299.99401 * 7 5 4 39 39 H 1.08998 * 109.46551 * 296.04598 * 9 8 7 40 40 H 1.09003 * 109.47182 * 56.04541 * 9 8 7 41 41 H 1.08997 * 109.47165 * 176.04349 * 9 8 7 42 42 H 1.09009 * 109.46542 * 70.00009 * 10 8 7 43 43 H 1.08998 * 109.47050 * 310.00544 * 10 8 7 44 44 H 1.08997 * 109.47115 * 90.00316 * 14 13 11 45 45 H 1.08995 * 109.47364 * 210.00706 * 14 13 11 46 46 H 1.09002 * 109.47090 * 330.00257 * 14 13 11 47 47 H 1.08997 * 111.00199 * 35.21823 * 17 15 13 48 48 H 1.09004 * 111.00790 * 159.06303 * 17 15 13 49 49 H 1.08995 * 110.36859 * 204.15195 * 18 17 15 50 50 H 1.09000 * 110.45737 * 81.86989 * 18 17 15 51 51 H 0.97002 * 119.99903 * 179.97438 * 23 22 20 52 52 H 1.09002 * 109.88246 * 239.52432 * 28 19 18 53 53 H 1.08998 * 109.88178 * 118.35717 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1943 6 8 3.9355 -1.1994 0.2023 7 6 3.7425 -1.9701 2.4246 8 7 5.0889 -2.4990 2.1692 9 6 5.0554 -3.5525 1.1460 10 6 5.7061 -2.9887 3.4091 11 6 7.1609 -3.2930 3.1600 12 8 7.6368 -3.1187 2.0581 13 7 7.9317 -3.7638 4.1603 14 6 7.3570 -3.9739 5.4913 15 6 9.3445 -4.0653 3.9165 16 1 9.6020 -3.8824 2.8733 17 6 9.6709 -5.5279 4.3184 18 6 9.8952 -5.3885 5.8448 19 7 10.5731 -4.0898 6.0095 20 6 11.3717 -3.7343 7.0636 21 1 11.8242 -2.7542 7.0917 22 6 11.5997 -4.6340 8.0958 23 7 11.0479 -5.8285 8.0616 24 14 12.6896 -4.1494 9.5334 25 1 12.1130 -2.9618 10.2134 26 1 12.7719 -5.2783 10.4947 27 1 14.0499 -3.8227 9.0352 28 6 10.2490 -3.2390 4.8551 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.4623 -0.7387 1.9895 37 1 3.0698 -2.7922 2.6691 38 1 3.7790 -1.2699 3.2593 39 1 4.4754 -4.3986 1.5147 40 1 4.5937 -3.1632 0.2386 41 1 6.0722 -3.8775 0.9256 42 1 5.1960 -3.8951 3.7355 43 1 5.6218 -2.2257 4.1829 44 1 6.9642 -4.9882 5.5615 45 1 8.1289 -3.8301 6.2473 46 1 6.5501 -3.2597 5.6556 47 1 8.8303 -6.1884 4.1057 48 1 10.5757 -5.8772 3.8208 49 1 10.5291 -6.1963 6.2104 50 1 8.9409 -5.3879 6.3716 51 1 11.2076 -6.4573 8.7827 52 1 11.1639 -2.9566 4.3342 53 1 9.7196 -2.3467 5.1892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269257831.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:27 Heat of formation + Delta-G solvation = -41.171852 kcal Electronic energy + Delta-G solvation = -30549.379009 eV Core-core repulsion = 26456.924156 eV Total energy + Delta-G solvation = -4092.454853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40818 -40.81144 -39.20598 -37.60428 -36.55868 -35.92013 -33.98229 -32.71113 -31.24497 -30.00033 -29.19758 -28.73348 -28.07957 -27.49688 -26.14419 -24.56667 -22.31566 -22.01753 -21.65211 -21.34912 -19.88083 -18.92696 -18.46101 -18.08900 -17.26173 -17.06032 -16.80808 -16.69130 -16.56164 -15.79167 -15.65081 -15.54937 -15.24535 -15.00876 -14.86832 -14.46983 -14.14725 -13.89401 -13.79523 -13.67978 -13.56129 -13.31003 -13.24442 -13.12829 -13.06994 -12.98065 -12.84951 -12.74848 -12.61025 -12.56346 -12.31902 -12.22293 -12.05048 -11.89670 -11.88435 -11.76702 -11.39897 -10.92520 -10.67582 -10.51670 -10.05129 -9.59230 -9.24782 -8.85133 -7.74229 -5.18038 1.49497 1.51538 1.57894 1.67127 1.71385 1.83994 2.24618 2.51814 3.03981 3.35723 3.55763 3.74608 3.80728 3.91087 4.01260 4.05087 4.14794 4.18827 4.28149 4.30539 4.33372 4.34592 4.40362 4.46249 4.59300 4.63447 4.65330 4.72402 4.72879 4.74974 4.77846 4.91664 4.94938 4.96401 5.04741 5.05243 5.15967 5.21088 5.28327 5.33870 5.48107 5.58932 5.62736 5.69442 5.85276 5.90330 5.94770 6.34179 6.53591 6.67705 7.14294 7.26342 7.39059 7.79820 8.43940 9.26556 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026704 B = 0.001916 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.282744 B =14611.347385 C =14929.544349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 C -0.160 4.160 4 N -0.716 5.716 5 C 0.508 3.492 6 O -0.569 6.569 7 C 0.038 3.962 8 N -0.537 5.537 9 C 0.027 3.973 10 C 0.048 3.952 11 C 0.508 3.492 12 O -0.570 6.570 13 N -0.598 5.598 14 C 0.073 3.927 15 C 0.139 3.861 16 H 0.094 0.906 17 C -0.139 4.139 18 C 0.153 3.847 19 N -0.618 5.618 20 C -0.238 4.238 21 H 0.075 0.925 22 C -0.060 4.060 23 N -0.943 5.943 24 Si 0.977 3.023 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.283 1.283 28 C 0.129 3.871 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.416 0.584 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.131 0.869 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.020 0.980 51 H 0.247 0.753 52 H 0.026 0.974 53 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.433 7.917 -9.548 29.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.029 3.971 3 C -0.218 4.218 4 N -0.370 5.370 5 C 0.295 3.705 6 O -0.447 6.447 7 C -0.092 4.092 8 N -0.261 5.261 9 C -0.121 4.121 10 C -0.082 4.082 11 C 0.297 3.703 12 O -0.448 6.448 13 N -0.330 5.330 14 C -0.069 4.069 15 C 0.034 3.966 16 H 0.112 0.888 17 C -0.178 4.178 18 C 0.029 3.971 19 N -0.344 5.344 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.209 1.209 28 C 0.003 3.997 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.253 0.747 37 H 0.114 0.886 38 H 0.151 0.849 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.038 0.962 51 H 0.057 0.943 52 H 0.044 0.956 53 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -25.343 8.364 -10.824 28.799 hybrid contribution 0.537 -0.526 1.308 1.509 sum -24.806 7.839 -9.516 27.701 Atomic orbital electron populations 1.22009 0.91518 1.03160 1.04110 1.20953 0.95733 0.92484 0.87968 1.22149 1.00207 0.96229 1.03241 1.45999 1.17130 1.56323 1.17549 1.20986 0.81340 0.78509 0.89703 1.90706 1.57005 1.60302 1.36731 1.22112 0.89676 1.01053 0.96350 1.61127 1.20058 1.36640 1.08310 1.22466 1.02111 0.91873 0.95678 1.22054 0.90067 1.02960 0.93115 1.21165 0.89637 0.75975 0.83522 1.90652 1.75519 1.53700 1.24978 1.47852 1.09464 1.64163 1.11560 1.22099 0.99727 1.02263 0.82810 1.21792 0.80598 0.95291 0.98922 0.88759 1.23181 1.01195 0.95084 0.98378 1.21896 0.95696 0.89038 0.90507 1.44726 1.55947 1.12939 1.20823 1.19329 1.21197 0.98846 0.97366 0.90701 1.25513 1.02160 0.96419 1.01163 1.70020 1.48824 1.06883 1.33537 0.85184 0.78644 0.76726 0.78913 1.20470 1.21871 1.20915 1.21673 0.95791 0.93605 0.88627 0.90426 0.90242 0.91703 0.92209 0.95161 0.90656 0.91065 0.74656 0.88577 0.84927 0.94563 0.91404 0.92373 0.88839 0.85103 0.91555 0.91700 0.88379 0.90100 0.91290 0.91342 0.96180 0.94277 0.95641 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.38 71.99 0.68 -0.15 16 2 C 0.13 1.65 3.18 45.00 0.14 1.79 16 3 C -0.16 -2.10 9.48 71.98 0.68 -1.41 16 4 N -0.72 -8.22 5.08 -442.51 -2.25 -10.47 16 5 C 0.51 9.80 7.49 87.66 0.66 10.46 16 6 O -0.57 -17.41 13.99 -3.04 -0.04 -17.45 16 7 C 0.04 0.54 5.45 85.56 0.47 1.01 16 8 N -0.54 -12.61 4.24 -931.61 -3.95 -16.55 16 9 C 0.03 0.69 8.85 127.69 1.13 1.82 16 10 C 0.05 0.98 4.00 85.56 0.34 1.32 16 11 C 0.51 15.62 7.40 87.66 0.65 16.27 16 12 O -0.57 -22.49 13.68 -3.04 -0.04 -22.53 16 13 N -0.60 -18.79 2.82 -815.98 -2.30 -21.10 16 14 C 0.07 1.98 8.33 127.77 1.06 3.04 16 15 C 0.14 5.15 3.58 46.18 0.17 5.32 16 16 H 0.09 3.64 6.99 -2.39 -0.02 3.63 16 17 C -0.14 -5.26 6.53 31.99 0.21 -5.05 16 18 C 0.15 7.10 5.00 86.86 0.43 7.54 16 19 N -0.62 -30.85 2.97 -691.99 -2.05 -32.90 16 20 C -0.24 -13.08 10.27 84.03 0.86 -12.21 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.06 -3.27 5.49 84.86 0.47 -2.81 16 23 N -0.94 -53.83 10.09 21.65 0.22 -53.61 16 24 Si 0.98 44.67 29.55 68.60 2.03 46.70 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 28 C 0.13 5.54 6.24 86.73 0.54 6.08 16 29 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 1.08 7.58 -2.39 -0.02 1.06 16 33 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.42 1.67 8.60 -92.71 -0.80 0.88 16 37 H 0.10 0.77 8.12 -2.39 -0.02 0.75 16 38 H 0.13 1.12 7.93 -2.38 -0.02 1.10 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.98 5.82 -2.39 -0.01 1.97 16 41 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 42 H 0.09 1.39 8.08 -2.38 -0.02 1.37 16 43 H 0.13 1.94 7.20 -2.39 -0.02 1.93 16 44 H 0.07 1.63 7.99 -2.39 -0.02 1.61 16 45 H 0.06 2.32 5.19 -2.39 -0.01 2.31 16 46 H 0.10 1.83 6.45 -2.39 -0.02 1.81 16 47 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 48 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.07 3.72 5.87 -2.39 -0.01 3.70 16 50 H 0.02 0.94 5.54 -2.39 -0.01 0.93 16 51 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 52 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.03 1.07 8.04 -2.39 -0.02 1.05 16 Total: -1.00 -78.41 407.29 0.20 -78.21 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.10 Total: 16.69 kcal Atomic # 6 Polarization: 24.53 SS G_CDS: 8.49 Total: 33.02 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -10.33 Total: -134.63 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.08 Total: -39.99 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -78.41 0.20 -78.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269257831.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.033 kcal (2) G-P(sol) polarization free energy of solvation -78.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds