Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 N 1.46502 * 109.47335 * 119.99847 * 2 1 3 5 5 C 1.34775 * 120.00234 * 155.00048 * 4 2 1 6 6 O 1.21284 * 120.00095 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99901 * 180.02562 * 5 4 2 8 8 N 1.46904 * 109.46676 * 179.97438 * 7 5 4 9 9 C 1.46891 * 111.00206 * 293.95203 * 8 7 5 10 10 C 1.46908 * 110.99757 * 169.99955 * 8 7 5 11 11 C 1.50696 * 109.47219 * 189.99916 * 10 8 7 12 12 O 1.21287 * 119.99914 * 0.02562 * 11 10 8 13 13 N 1.34768 * 120.00079 * 179.97438 * 11 10 8 14 14 C 1.47426 * 125.64920 * 5.12538 * 13 11 10 15 15 C 1.54910 * 104.83077 * 155.83586 * 14 13 11 16 16 C 1.55398 * 101.66708 * 36.92939 * 15 14 13 17 17 C 1.47025 * 125.64821 * 185.09023 * 13 11 10 18 18 H 1.08998 * 109.87924 * 300.65910 * 17 13 11 19 19 C 1.52999 * 109.88438 * 61.67625 * 17 13 11 20 20 N 1.46503 * 109.46641 * 185.40844 * 19 17 13 21 21 C 1.36941 * 119.99401 * 175.01722 * 20 19 17 22 22 H 1.07998 * 120.00436 * 359.97438 * 21 20 19 23 23 C 1.38808 * 119.99809 * 179.97438 * 21 20 19 24 24 N 1.31626 * 120.00257 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 120.00243 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46941 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47118 * 119.99623 * 25 23 21 28 28 H 1.48499 * 109.47052 * 240.00296 * 25 23 21 29 29 H 1.09004 * 109.46933 * 299.99710 * 1 2 3 30 30 H 1.08997 * 109.47195 * 60.00006 * 1 2 3 31 31 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47239 * 239.99877 * 2 1 3 33 33 H 1.08997 * 109.47045 * 300.00086 * 3 2 1 34 34 H 1.09001 * 109.47128 * 59.99809 * 3 2 1 35 35 H 1.08996 * 109.47362 * 179.97438 * 3 2 1 36 36 H 0.97004 * 119.99625 * 335.00108 * 4 2 1 37 37 H 1.08999 * 109.47088 * 60.00175 * 7 5 4 38 38 H 1.08999 * 109.47023 * 300.00014 * 7 5 4 39 39 H 1.08999 * 109.47429 * 296.04897 * 9 8 7 40 40 H 1.09004 * 109.47017 * 56.04855 * 9 8 7 41 41 H 1.09000 * 109.47273 * 176.05057 * 9 8 7 42 42 H 1.09002 * 109.46687 * 69.99906 * 10 8 7 43 43 H 1.09001 * 109.46944 * 310.00334 * 10 8 7 44 44 H 1.08999 * 110.37114 * 274.67791 * 14 13 11 45 45 H 1.09006 * 110.36214 * 37.00404 * 14 13 11 46 46 H 1.08998 * 111.00232 * 155.08731 * 15 14 13 47 47 H 1.09008 * 111.00466 * 278.93932 * 15 14 13 48 48 H 1.09007 * 110.85289 * 206.29917 * 16 15 14 49 49 H 1.08996 * 110.69695 * 82.95262 * 16 15 14 50 50 H 1.08998 * 109.46951 * 65.40925 * 19 17 13 51 51 H 1.08996 * 109.47071 * 305.40663 * 19 17 13 52 52 H 0.96997 * 120.00591 * 354.73513 * 20 19 17 53 53 H 0.97000 * 120.00205 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2404 -1.2591 1.1944 6 8 3.9359 -1.1987 0.2027 7 6 3.7425 -1.9700 2.4247 8 7 5.0890 -2.4989 2.1693 9 6 5.0554 -3.5524 1.1463 10 6 5.7061 -2.9886 3.4093 11 6 7.1609 -3.2929 3.1602 12 8 7.6369 -3.1186 2.0583 13 7 7.9332 -3.7579 4.1620 14 6 7.4647 -4.1141 5.5137 15 6 8.5106 -5.1277 6.0415 16 6 9.8297 -4.5521 5.4554 17 6 9.3824 -3.9945 4.0877 18 1 9.5998 -4.7191 3.3030 19 6 10.1101 -2.6801 3.7984 20 7 11.5369 -2.9458 3.5983 21 6 12.3764 -1.9307 3.2241 22 1 11.9867 -0.9345 3.0760 23 6 13.7283 -2.1823 3.0351 24 7 14.2035 -3.3963 3.2160 25 14 14.8735 -0.7978 2.5238 26 1 14.0978 0.4611 2.3867 27 1 15.9271 -0.6206 3.5551 28 1 15.5057 -1.1332 1.2227 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.4622 -0.7386 1.9895 37 1 3.0699 -2.7921 2.6692 38 1 3.7789 -1.2699 3.2594 39 1 4.4754 -4.3985 1.5148 40 1 4.5937 -3.1631 0.2388 41 1 6.0722 -3.8775 0.9259 42 1 5.1960 -3.8949 3.7356 43 1 5.6218 -2.2255 4.1831 44 1 7.4377 -3.2303 6.1511 45 1 6.4792 -4.5772 5.4638 46 1 8.5355 -5.1316 7.1312 47 1 8.3163 -6.1275 5.6530 48 1 10.5730 -5.3390 5.3267 49 1 10.2170 -3.7544 6.0891 50 1 9.9816 -2.0007 4.6409 51 1 9.6955 -2.2257 2.8986 52 1 11.8876 -3.8398 3.7349 53 1 15.1483 -3.5720 3.0843 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270234669.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -72.332471 kcal Electronic energy + Delta-G solvation = -30248.207599 eV Core-core repulsion = 26154.401520 eV Total energy + Delta-G solvation = -4093.806079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38526 -40.82217 -38.94908 -37.50750 -36.55652 -36.42985 -33.56510 -32.75460 -32.59777 -30.55379 -29.37325 -28.74147 -28.09375 -26.73517 -25.23142 -24.26764 -23.25043 -22.17653 -21.62790 -21.36157 -20.13744 -19.12955 -18.31716 -17.99322 -17.55707 -17.06147 -16.75051 -16.51415 -16.42702 -15.97870 -15.56638 -15.44518 -15.30157 -15.05800 -14.94964 -14.85463 -14.67074 -13.98892 -13.92418 -13.88426 -13.70259 -13.50331 -13.19615 -13.13217 -13.06858 -12.92754 -12.87809 -12.79800 -12.61843 -12.48252 -12.24399 -12.18619 -12.03612 -11.92824 -11.90384 -11.74644 -11.55955 -11.05847 -10.94509 -10.57910 -10.06712 -9.61072 -9.24412 -9.07222 -8.00726 -5.30444 1.41837 1.44642 1.54643 1.67454 1.70812 1.81834 2.22769 2.52646 3.03307 3.31518 3.48627 3.68681 3.79548 3.88516 3.95981 4.00311 4.12464 4.13789 4.21354 4.24409 4.32873 4.34409 4.35454 4.38411 4.42928 4.54890 4.56493 4.60784 4.73351 4.76249 4.76741 4.86372 4.93806 4.97071 5.03747 5.04561 5.15985 5.16468 5.19855 5.26863 5.32558 5.36578 5.41754 5.49147 5.61503 5.89562 5.94318 6.21445 6.65415 6.67974 7.27394 7.30139 7.39426 7.99033 8.26942 9.22655 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002275 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.777757 B =12306.941764 C =14110.567316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.133 3.867 3 C -0.161 4.161 4 N -0.714 5.714 5 C 0.505 3.495 6 O -0.573 6.573 7 C 0.042 3.958 8 N -0.544 5.544 9 C 0.028 3.972 10 C 0.057 3.943 11 C 0.511 3.489 12 O -0.572 6.572 13 N -0.615 5.615 14 C 0.095 3.905 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.139 3.861 18 H 0.043 0.957 19 C 0.155 3.845 20 N -0.736 5.736 21 C -0.250 4.250 22 H 0.065 0.935 23 C -0.072 4.072 24 N -0.965 5.965 25 Si 0.977 3.023 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.291 1.291 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.417 0.583 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.019 0.981 51 H -0.001 1.001 52 H 0.377 0.623 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.853 -0.001 8.249 36.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.369 5.369 5 C 0.291 3.709 6 O -0.451 6.451 7 C -0.088 4.088 8 N -0.269 5.269 9 C -0.120 4.120 10 C -0.073 4.073 11 C 0.300 3.700 12 O -0.450 6.450 13 N -0.350 5.350 14 C -0.026 4.026 15 C -0.157 4.157 16 C -0.157 4.157 17 C 0.034 3.966 18 H 0.061 0.939 19 C 0.027 3.973 20 N -0.380 5.380 21 C -0.381 4.381 22 H 0.083 0.917 23 C -0.264 4.264 24 N -0.615 5.615 25 Si 0.805 3.195 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.218 1.218 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.255 0.745 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.153 0.847 44 H 0.105 0.895 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.037 0.963 51 H 0.017 0.983 52 H 0.209 0.791 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -34.881 0.734 6.661 35.519 hybrid contribution 1.010 -0.179 -0.414 1.106 sum -33.872 0.556 6.248 34.447 Atomic orbital electron populations 1.22001 0.91311 1.03222 1.04146 1.20943 0.95856 0.92384 0.87990 1.22154 1.00082 0.96367 1.03290 1.45976 1.17101 1.56295 1.17513 1.21106 0.81341 0.78576 0.89841 1.90728 1.57059 1.60328 1.36983 1.22099 0.89429 1.01138 0.96154 1.61037 1.20414 1.36870 1.08592 1.22430 1.01753 0.92031 0.95777 1.21999 0.89083 1.03272 0.92943 1.21133 0.89727 0.76145 0.82954 1.90743 1.75750 1.53116 1.25396 1.48689 1.07178 1.65052 1.14078 1.22711 0.99604 0.99264 0.81003 1.22855 0.91715 0.98583 1.02510 1.22628 0.99094 1.00748 0.93252 1.21469 0.80915 0.95164 0.99053 0.93926 1.20920 0.84102 0.95813 0.96459 1.42327 1.03050 1.09660 1.82926 1.19573 0.90031 0.90820 1.37716 0.91726 1.25586 0.98395 0.99313 1.03147 1.69814 1.13574 1.20795 1.57350 0.85034 0.78678 0.78534 0.77254 1.19690 1.20895 1.21845 0.90258 0.90337 0.91591 0.92468 0.90725 0.90875 0.95429 0.74529 0.88078 0.84668 0.93923 0.91718 0.93126 0.88010 0.84727 0.89532 0.86879 0.86823 0.89979 0.90807 0.90956 0.96342 0.98327 0.79082 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.38 71.98 0.68 -0.20 16 2 C 0.13 1.77 3.18 44.99 0.14 1.92 16 3 C -0.16 -2.33 9.48 71.98 0.68 -1.64 16 4 N -0.71 -8.51 5.08 -442.51 -2.25 -10.76 16 5 C 0.50 10.19 7.49 87.66 0.66 10.85 16 6 O -0.57 -18.80 14.00 -3.04 -0.04 -18.84 16 7 C 0.04 0.58 5.45 85.56 0.47 1.04 16 8 N -0.54 -13.22 4.24 -931.64 -3.95 -17.16 16 9 C 0.03 0.77 8.85 127.69 1.13 1.90 16 10 C 0.06 1.08 4.54 85.55 0.39 1.47 16 11 C 0.51 16.28 7.29 87.66 0.64 16.92 16 12 O -0.57 -25.89 13.49 -3.05 -0.04 -25.93 16 13 N -0.61 -17.52 3.06 -788.04 -2.41 -19.93 16 14 C 0.10 1.49 6.65 86.86 0.58 2.07 16 15 C -0.12 -1.98 7.09 32.07 0.23 -1.75 16 16 C -0.12 -3.42 6.13 31.87 0.20 -3.22 16 17 C 0.14 5.13 2.91 45.34 0.13 5.26 16 18 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 19 C 0.15 7.41 5.66 86.38 0.49 7.89 16 20 N -0.74 -41.71 5.46 -343.46 -1.88 -43.59 16 21 C -0.25 -15.43 9.99 84.03 0.84 -14.59 16 22 H 0.06 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 24 N -0.96 -61.67 13.06 21.65 0.28 -61.38 16 25 Si 0.98 49.33 29.55 68.60 2.03 51.36 16 26 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 27 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 29 H 0.08 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 1.12 7.58 -2.39 -0.02 1.10 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.42 1.55 8.60 -92.71 -0.80 0.76 16 37 H 0.10 0.66 8.12 -2.39 -0.02 0.64 16 38 H 0.14 1.02 7.93 -2.39 -0.02 1.00 16 39 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 2.03 5.83 -2.39 -0.01 2.02 16 41 H 0.05 1.82 5.88 -2.39 -0.01 1.80 16 42 H 0.10 1.12 7.74 -2.39 -0.02 1.10 16 43 H 0.13 1.70 7.93 -2.39 -0.02 1.68 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 0.90 7.51 -2.38 -0.02 0.88 16 46 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 49 H 0.07 2.22 7.76 -2.39 -0.02 2.20 16 50 H 0.02 0.87 8.02 -2.39 -0.02 0.85 16 51 H 0.00 -0.07 6.88 -2.39 -0.02 -0.09 16 52 H 0.38 21.90 7.46 -92.71 -0.69 21.21 16 53 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -95.21 419.94 -1.14 -96.35 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.59 Total: 25.94 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 7.71 Total: 23.96 kcal Atomic # 7 Polarization: -142.63 SS G_CDS: -10.20 Total: -152.83 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -0.08 Total: -44.77 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -95.21 -1.14 -96.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270234669.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.014 kcal (2) G-P(sol) polarization free energy of solvation -95.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds