Wall clock time and date at job start Sat Apr 11 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00124 * 2 1 4 4 O 1.42896 * 109.47369 * 75.00010 * 3 2 1 5 5 C 1.42899 * 114.00112 * 75.00204 * 4 3 2 6 6 C 1.52999 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47139 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47495 * 179.97438 * 7 6 5 9 9 C 1.47664 * 110.99836 * 69.43518 * 8 7 6 10 10 C 1.54520 * 107.05687 * 123.12383 * 9 8 7 11 11 C 1.54347 * 102.63878 * 22.92070 * 10 9 8 12 12 H 1.09001 * 110.75810 * 80.40975 * 11 10 9 13 13 C 1.48268 * 111.00557 * 190.00184 * 8 7 6 14 14 H 1.08997 * 111.35857 * 91.92354 * 13 8 7 15 15 C 1.53124 * 108.11068 * 329.41369 * 13 8 7 16 16 C 1.52887 * 109.33300 * 182.69909 * 15 13 8 17 17 C 1.50353 * 109.30740 * 52.85063 * 16 15 13 18 18 O 1.21277 * 118.79947 * 158.33827 * 17 16 15 19 19 N 1.33352 * 122.39514 * 338.36539 * 17 16 15 20 20 C 1.46499 * 117.28655 * 179.73617 * 19 17 16 21 21 C 1.53002 * 109.47337 * 89.99611 * 20 19 17 22 22 C 1.50696 * 109.46997 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08991 * 109.47442 * 60.00199 * 1 2 3 31 31 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46735 * 299.99577 * 1 2 3 33 33 H 1.09000 * 109.47190 * 315.00333 * 3 2 1 34 34 H 1.08999 * 109.47375 * 195.00666 * 3 2 1 35 35 H 1.08999 * 109.47345 * 59.99858 * 5 4 3 36 36 H 1.09004 * 109.47078 * 300.00229 * 5 4 3 37 37 H 1.09003 * 109.47271 * 60.00399 * 6 5 4 38 38 H 1.08998 * 109.47228 * 299.99626 * 6 5 4 39 39 H 1.09007 * 109.46927 * 59.99920 * 7 6 5 40 40 H 1.09004 * 109.47320 * 300.00250 * 7 6 5 41 41 H 1.08999 * 109.91793 * 242.48254 * 9 8 7 42 42 H 1.09007 * 109.91588 * 3.77365 * 9 8 7 43 43 H 1.08996 * 110.78222 * 141.27216 * 10 9 8 44 44 H 1.08994 * 110.78751 * 264.53266 * 10 9 8 45 45 H 1.09003 * 109.49505 * 62.74797 * 15 13 8 46 46 H 1.08997 * 109.49556 * 302.65702 * 15 13 8 47 47 H 1.09006 * 109.50005 * 292.90570 * 16 15 13 48 48 H 1.08995 * 109.50352 * 172.79928 * 16 15 13 49 49 H 1.09005 * 109.47136 * 329.99906 * 20 19 17 50 50 H 1.09002 * 109.47352 * 209.99873 * 20 19 17 51 51 H 1.09005 * 109.46767 * 60.00068 * 21 20 19 52 52 H 1.09002 * 109.47113 * 300.00408 * 21 20 19 53 53 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7912 1.3426 2.2658 6 6 2.5691 2.0297 3.6146 7 6 3.5385 1.4512 4.6474 8 7 3.3257 2.1113 5.9424 9 6 2.0273 1.7217 6.5279 10 6 2.3203 1.1214 7.9212 11 6 3.6894 1.7402 8.2745 12 1 3.5690 2.7571 8.6480 13 6 4.3969 1.7543 6.9033 14 1 5.2162 2.4724 6.8694 15 6 4.8833 0.3410 6.5704 16 6 5.9433 -0.0822 7.5876 17 6 5.3997 0.1011 8.9774 18 8 5.8991 -0.5260 9.8875 19 7 4.3882 0.9276 9.2457 20 6 3.9440 1.0153 10.6390 21 6 4.7266 2.1177 11.3553 22 6 4.2692 2.2083 12.7883 23 1 3.4979 1.5456 13.1519 24 6 4.8356 3.1373 13.6353 25 7 4.4368 3.2161 14.8861 26 14 6.1693 4.2840 13.0062 27 1 7.4992 3.6552 13.2096 28 1 5.9593 4.5405 11.5587 29 1 6.1098 5.5678 13.7502 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.4942 1.9329 -0.7266 34 1 3.0648 1.2336 -0.2661 35 1 3.8163 1.5115 1.9360 36 1 2.6150 0.2720 2.3704 37 1 1.5440 1.8603 3.9443 38 1 2.7451 3.1003 3.5104 39 1 4.5638 1.6202 4.3180 40 1 3.3622 0.3806 4.7516 41 1 1.3873 2.5983 6.6283 42 1 1.5440 0.9761 5.8964 43 1 1.5602 1.4254 8.6409 44 1 2.3876 0.0348 7.8678 45 1 5.3153 0.3313 5.5696 46 1 4.0430 -0.3519 6.6110 47 1 6.8346 0.5326 7.4616 48 1 6.1988 -1.1303 7.4322 49 1 4.1205 0.0620 11.1373 50 1 2.8796 1.2484 10.6670 51 1 4.5502 3.0710 10.8570 52 1 5.7911 1.8846 11.3273 53 1 4.8356 3.8694 15.4820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273465798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:47 Heat of formation + Delta-G solvation = -123.816873 kcal Electronic energy + Delta-G solvation = -30649.417117 eV Core-core repulsion = 26521.085756 eV Total energy + Delta-G solvation = -4128.331361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.14591 -39.35295 -38.73729 -36.87347 -35.60287 -34.11889 -33.17199 -32.65318 -30.60037 -29.39780 -28.28383 -27.84648 -25.88691 -25.32307 -24.41188 -23.68895 -22.38214 -21.70293 -20.90508 -19.86239 -18.16847 -17.75085 -17.28482 -17.14841 -16.71181 -16.65230 -16.28118 -15.77290 -15.69313 -15.03182 -14.94173 -14.62659 -14.33759 -14.17010 -14.04459 -13.75780 -13.58409 -13.48742 -13.03124 -12.75756 -12.62979 -12.48312 -12.20184 -12.11602 -11.91823 -11.78083 -11.63860 -11.50182 -11.41925 -11.30110 -11.26401 -10.94179 -10.90271 -10.78692 -10.62929 -10.33205 -10.31124 -10.00476 -9.81094 -9.35735 -9.12531 -8.58123 -8.51795 -8.21029 -6.03072 -4.01247 2.96621 3.01784 3.28855 3.33895 3.34343 3.40270 3.43731 3.80364 4.27150 4.36365 4.47339 4.55019 4.59421 4.62957 4.69006 4.74155 4.84624 4.87187 4.93695 4.96294 4.97565 5.01118 5.08309 5.12892 5.14556 5.20658 5.26406 5.31176 5.33073 5.36376 5.55701 5.61979 5.67579 5.69575 5.77448 5.81968 5.85093 6.00986 6.05510 6.11766 6.28996 6.39724 6.60401 6.67026 6.69877 6.74575 6.81042 7.28670 7.37416 7.78166 7.92172 8.50862 8.56324 9.00400 9.59186 11.10139 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002079 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.770764 B =13461.989828 C =13788.196691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.213 3.787 4 O -0.400 6.400 5 C 0.065 3.935 6 C -0.115 4.115 7 C 0.053 3.947 8 N -0.520 5.520 9 C 0.042 3.958 10 C -0.155 4.155 11 C 0.143 3.857 12 H 0.101 0.899 13 C 0.067 3.933 14 H 0.106 0.894 15 C -0.147 4.147 16 C -0.133 4.133 17 C 0.509 3.491 18 O -0.544 6.544 19 N -0.592 5.592 20 C 0.117 3.883 21 C -0.021 4.021 22 C -0.518 4.518 23 H 0.073 0.927 24 C 0.069 3.931 25 N -0.902 5.902 26 Si 0.881 3.119 27 H -0.277 1.277 28 H -0.267 1.267 29 H -0.288 1.288 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.068 0.932 51 H 0.014 0.986 52 H 0.016 0.984 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -4.021 -32.664 33.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.099 3.901 4 O -0.321 6.321 5 C -0.012 4.012 6 C -0.153 4.153 7 C -0.075 4.075 8 N -0.243 5.243 9 C -0.085 4.085 10 C -0.195 4.195 11 C 0.037 3.963 12 H 0.119 0.881 13 C -0.042 4.042 14 H 0.124 0.876 15 C -0.186 4.186 16 C -0.174 4.174 17 C 0.297 3.703 18 O -0.422 6.422 19 N -0.323 5.323 20 C -0.004 4.004 21 C -0.059 4.059 22 C -0.556 4.556 23 H 0.091 0.909 24 C -0.133 4.133 25 N -0.541 5.541 26 Si 0.708 3.292 27 H -0.203 1.203 28 H -0.192 1.192 29 H -0.214 1.214 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.087 0.913 51 H 0.033 0.967 52 H 0.035 0.965 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.520 -3.734 -32.103 32.787 hybrid contribution 0.640 -0.112 -0.195 0.679 sum -4.880 -3.847 -32.297 32.890 Atomic orbital electron populations 1.22770 0.80379 1.02792 1.00532 1.88003 1.20959 1.29679 1.93986 1.23932 0.98587 0.82705 0.84884 1.87998 1.60961 1.62201 1.20910 1.22482 0.92225 0.97647 0.88871 1.21502 1.00337 1.01588 0.91881 1.22182 0.99703 0.96239 0.89395 1.63796 1.01841 1.56380 1.02301 1.22927 0.91729 0.99805 0.94086 1.23166 0.98184 1.00802 0.97328 1.21476 0.90911 0.95934 0.87964 0.88148 1.22906 0.94693 0.95672 0.90884 0.87646 1.22295 0.99253 0.97444 0.99601 1.21611 0.99566 1.04220 0.92007 1.20017 0.80088 0.79271 0.90920 1.90748 1.57761 1.46866 1.46837 1.47137 1.33454 1.41661 1.10051 1.21724 0.98323 1.01970 0.78355 1.19824 0.96132 0.93562 0.96372 1.20966 1.22427 1.19314 0.92922 0.90890 1.24978 0.96540 0.97059 0.94676 1.69910 1.43111 1.36129 1.04926 0.86765 0.82720 0.80368 0.79334 1.20281 1.19151 1.21385 0.93904 0.89715 0.93201 0.89147 0.89174 0.93085 0.92763 0.91133 0.90179 0.90393 0.93948 0.89815 0.92338 0.89697 0.90998 0.90261 0.91163 0.88462 0.88443 0.90055 0.91332 0.96729 0.96519 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.89 101.05 1.10 1.28 16 2 O -0.41 -3.19 10.76 -59.04 -0.64 -3.82 16 3 C 0.21 1.32 7.07 101.05 0.71 2.03 16 4 O -0.40 -3.30 10.40 -59.04 -0.61 -3.91 16 5 C 0.06 0.46 5.82 37.16 0.22 0.67 16 6 C -0.12 -0.86 5.61 -26.73 -0.15 -1.01 16 7 C 0.05 0.40 3.34 -3.83 -0.01 0.38 16 8 N -0.52 -4.87 5.16 -223.03 -1.15 -6.02 16 9 C 0.04 0.39 6.17 -2.61 -0.02 0.37 16 10 C -0.16 -1.71 5.79 -25.23 -0.15 -1.85 16 11 C 0.14 1.89 3.11 -67.54 -0.21 1.68 16 12 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 13 C 0.07 0.71 3.51 -66.21 -0.23 0.47 16 14 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.15 -1.39 3.87 -26.73 -0.10 -1.49 16 16 C -0.13 -1.58 6.08 -28.11 -0.17 -1.75 16 17 C 0.51 8.82 7.47 -11.79 -0.09 8.73 16 18 O -0.54 -12.04 16.21 5.56 0.09 -11.95 16 19 N -0.59 -9.95 2.49 -166.42 -0.41 -10.36 16 20 C 0.12 2.42 5.02 -4.04 -0.02 2.40 16 21 C -0.02 -0.51 4.35 -27.88 -0.12 -0.63 16 22 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 23 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 24 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 25 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 26 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H 0.04 0.18 8.11 -51.93 -0.42 -0.24 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.31 8.03 -51.93 -0.42 -0.11 16 33 H 0.09 0.40 8.01 -51.93 -0.42 -0.02 16 34 H 0.09 0.41 8.01 -51.93 -0.42 0.00 16 35 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 36 H 0.05 0.40 8.03 -51.93 -0.42 -0.02 16 37 H 0.07 0.57 7.11 -51.93 -0.37 0.20 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.53 7.30 -51.92 -0.38 0.15 16 40 H 0.04 0.31 6.73 -51.93 -0.35 -0.04 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.48 6.90 -51.92 -0.36 0.12 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.81 7.39 -51.93 -0.38 0.43 16 45 H 0.08 0.58 6.38 -51.93 -0.33 0.25 16 46 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 47 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 1.84 7.14 -51.93 -0.37 1.47 16 50 H 0.07 1.30 7.79 -51.93 -0.40 0.90 16 51 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 52 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 53 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 408.19 15.07 6.15 6.15 Total: -1.00 -35.05 408.19 -9.67 -44.72 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -9.53 Total: -2.98 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 0.33 Total: -2.14 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.79 Total: -43.83 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -1.16 Total: -19.68 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.05 -9.67 -44.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273465798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.101 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds