Wall clock time and date at job start Sat Apr 11 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00124 * 2 1 4 4 O 1.42896 * 109.47369 * 75.00010 * 3 2 1 5 5 C 1.42899 * 114.00112 * 75.00204 * 4 3 2 6 6 C 1.52999 * 109.47258 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47139 * 179.97438 * 6 5 4 8 8 N 1.46896 * 109.47495 * 179.97438 * 7 6 5 9 9 C 1.47664 * 110.99836 * 69.43518 * 8 7 6 10 10 C 1.54520 * 107.05687 * 123.12383 * 9 8 7 11 11 C 1.54347 * 102.63878 * 22.92070 * 10 9 8 12 12 H 1.09001 * 110.75810 * 80.40975 * 11 10 9 13 13 C 1.48268 * 111.00557 * 190.00184 * 8 7 6 14 14 H 1.08997 * 111.35857 * 91.92354 * 13 8 7 15 15 C 1.53124 * 108.11068 * 329.41369 * 13 8 7 16 16 C 1.52887 * 109.33300 * 182.69909 * 15 13 8 17 17 C 1.50353 * 109.30740 * 52.85063 * 16 15 13 18 18 O 1.21277 * 118.79947 * 158.33827 * 17 16 15 19 19 N 1.33352 * 122.39514 * 338.36539 * 17 16 15 20 20 C 1.46499 * 117.28655 * 179.73617 * 19 17 16 21 21 C 1.53002 * 109.47337 * 89.99611 * 20 19 17 22 22 C 1.50696 * 109.46997 * 179.97438 * 21 20 19 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08991 * 109.47442 * 60.00199 * 1 2 3 31 31 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46735 * 299.99577 * 1 2 3 33 33 H 1.09000 * 109.47190 * 315.00333 * 3 2 1 34 34 H 1.08999 * 109.47375 * 195.00666 * 3 2 1 35 35 H 1.08999 * 109.47345 * 59.99858 * 5 4 3 36 36 H 1.09004 * 109.47078 * 300.00229 * 5 4 3 37 37 H 1.09003 * 109.47271 * 60.00399 * 6 5 4 38 38 H 1.08998 * 109.47228 * 299.99626 * 6 5 4 39 39 H 1.09007 * 109.46927 * 59.99920 * 7 6 5 40 40 H 1.09004 * 109.47320 * 300.00250 * 7 6 5 41 41 H 1.08999 * 109.91793 * 242.48254 * 9 8 7 42 42 H 1.09007 * 109.91588 * 3.77365 * 9 8 7 43 43 H 1.08996 * 110.78222 * 141.27216 * 10 9 8 44 44 H 1.08994 * 110.78751 * 264.53266 * 10 9 8 45 45 H 1.09003 * 109.49505 * 62.74797 * 15 13 8 46 46 H 1.08997 * 109.49556 * 302.65702 * 15 13 8 47 47 H 1.09006 * 109.50005 * 292.90570 * 16 15 13 48 48 H 1.08995 * 109.50352 * 172.79928 * 16 15 13 49 49 H 1.09005 * 109.47136 * 329.99906 * 20 19 17 50 50 H 1.09002 * 109.47352 * 209.99873 * 20 19 17 51 51 H 1.09005 * 109.46767 * 60.00068 * 21 20 19 52 52 H 1.09002 * 109.47113 * 300.00408 * 21 20 19 53 53 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8855 1.8824 1.3013 5 6 2.7912 1.3426 2.2658 6 6 2.5691 2.0297 3.6146 7 6 3.5385 1.4512 4.6474 8 7 3.3257 2.1113 5.9424 9 6 2.0273 1.7217 6.5279 10 6 2.3203 1.1214 7.9212 11 6 3.6894 1.7402 8.2745 12 1 3.5690 2.7571 8.6480 13 6 4.3969 1.7543 6.9033 14 1 5.2162 2.4724 6.8694 15 6 4.8833 0.3410 6.5704 16 6 5.9433 -0.0822 7.5876 17 6 5.3997 0.1011 8.9774 18 8 5.8991 -0.5260 9.8875 19 7 4.3882 0.9276 9.2457 20 6 3.9440 1.0153 10.6390 21 6 4.7266 2.1177 11.3553 22 6 4.2692 2.2083 12.7883 23 1 3.4979 1.5456 13.1519 24 6 4.8356 3.1373 13.6353 25 7 4.4368 3.2161 14.8861 26 14 6.1693 4.2840 13.0062 27 1 7.4992 3.6552 13.2096 28 1 5.9593 4.5405 11.5587 29 1 6.1098 5.5678 13.7502 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.4942 1.9329 -0.7266 34 1 3.0648 1.2336 -0.2661 35 1 3.8163 1.5115 1.9360 36 1 2.6150 0.2720 2.3704 37 1 1.5440 1.8603 3.9443 38 1 2.7451 3.1003 3.5104 39 1 4.5638 1.6202 4.3180 40 1 3.3622 0.3806 4.7516 41 1 1.3873 2.5983 6.6283 42 1 1.5440 0.9761 5.8964 43 1 1.5602 1.4254 8.6409 44 1 2.3876 0.0348 7.8678 45 1 5.3153 0.3313 5.5696 46 1 4.0430 -0.3519 6.6110 47 1 6.8346 0.5326 7.4616 48 1 6.1988 -1.1303 7.4322 49 1 4.1205 0.0620 11.1373 50 1 2.8796 1.2484 10.6670 51 1 4.5502 3.0710 10.8570 52 1 5.7911 1.8846 11.3273 53 1 4.8356 3.8694 15.4820 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273465798.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:46 Heat of formation + Delta-G solvation = -148.845701 kcal Electronic energy + Delta-G solvation = -30650.502449 eV Core-core repulsion = 26521.085756 eV Total energy + Delta-G solvation = -4129.416693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21219 -40.03931 -39.68575 -37.46213 -36.91584 -35.46730 -34.48489 -33.94415 -32.12654 -30.55132 -29.19020 -28.31863 -27.06499 -26.45167 -25.03390 -24.77203 -23.15921 -22.98080 -22.35287 -20.75523 -19.44611 -18.87297 -18.27895 -17.92347 -17.79519 -17.50258 -17.24177 -16.70648 -16.63368 -16.32379 -15.96746 -15.70770 -15.37965 -15.05555 -14.89685 -14.86289 -14.72369 -14.60610 -14.37591 -14.23664 -13.72967 -13.64824 -13.08774 -13.03284 -12.91635 -12.80116 -12.67483 -12.52452 -12.47311 -12.28736 -12.15491 -11.96833 -11.91324 -11.81627 -11.76157 -11.71052 -11.53306 -11.48111 -11.12299 -10.81995 -10.81422 -10.59474 -9.68083 -9.28166 -8.34328 -6.38850 1.30594 1.32333 1.43738 1.63292 1.98100 2.31252 2.58151 2.89984 3.00502 3.06178 3.39217 3.50618 3.64714 3.80818 4.03852 4.06908 4.16030 4.19820 4.21792 4.26856 4.33853 4.34414 4.38040 4.41722 4.43425 4.52695 4.54896 4.56349 4.57790 4.65329 4.72715 4.76116 4.80882 4.81766 4.83579 4.86859 4.89296 4.97989 5.05926 5.18552 5.23873 5.25016 5.30855 5.34090 5.44971 5.63797 5.83836 5.88742 6.09109 6.19921 6.30876 6.57695 6.67005 7.19351 7.25938 8.82088 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002079 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.770764 B =13461.989828 C =13788.196691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.426 6.426 3 C 0.207 3.793 4 O -0.419 6.419 5 C 0.066 3.934 6 C -0.107 4.107 7 C 0.054 3.946 8 N -0.524 5.524 9 C 0.050 3.950 10 C -0.150 4.150 11 C 0.130 3.870 12 H 0.088 0.912 13 C 0.074 3.926 14 H 0.110 0.890 15 C -0.137 4.137 16 C -0.122 4.122 17 C 0.499 3.501 18 O -0.603 6.603 19 N -0.587 5.587 20 C 0.129 3.871 21 C -0.009 4.009 22 C -0.532 4.532 23 H 0.037 0.963 24 C 0.009 3.991 25 N -0.945 5.945 26 Si 0.949 3.051 27 H -0.276 1.276 28 H -0.247 1.247 29 H -0.276 1.276 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.113 0.887 46 H 0.069 0.931 47 H 0.115 0.885 48 H 0.110 0.890 49 H 0.053 0.947 50 H 0.080 0.920 51 H 0.026 0.974 52 H 0.000 1.000 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 -3.247 -36.537 37.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.346 6.346 3 C 0.093 3.907 4 O -0.340 6.340 5 C -0.011 4.011 6 C -0.145 4.145 7 C -0.074 4.074 8 N -0.247 5.247 9 C -0.078 4.078 10 C -0.189 4.189 11 C 0.026 3.974 12 H 0.106 0.894 13 C -0.035 4.035 14 H 0.127 0.873 15 C -0.176 4.176 16 C -0.162 4.162 17 C 0.289 3.711 18 O -0.485 6.485 19 N -0.317 5.317 20 C 0.006 3.994 21 C -0.047 4.047 22 C -0.570 4.570 23 H 0.055 0.945 24 C -0.189 4.189 25 N -0.585 5.585 26 Si 0.773 3.227 27 H -0.201 1.201 28 H -0.171 1.171 29 H -0.201 1.201 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.132 0.868 46 H 0.088 0.912 47 H 0.133 0.867 48 H 0.129 0.871 49 H 0.071 0.929 50 H 0.099 0.901 51 H 0.044 0.956 52 H 0.018 0.982 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.720 -2.949 -36.032 36.459 hybrid contribution 0.283 -0.396 1.050 1.157 sum -4.437 -3.345 -34.982 35.420 Atomic orbital electron populations 1.22870 0.79653 1.03472 1.00804 1.87973 1.21922 1.30709 1.94035 1.24218 0.99715 0.82415 0.84354 1.87974 1.61534 1.62671 1.21844 1.22490 0.92829 0.97244 0.88540 1.21400 0.99843 1.01059 0.92222 1.22244 1.00531 0.96459 0.88167 1.63819 1.01317 1.56863 1.02704 1.22883 0.91925 1.00092 0.92906 1.23101 0.96674 1.00639 0.98511 1.21729 0.92326 0.94744 0.88632 0.89419 1.22837 0.94849 0.96669 0.89121 0.87253 1.22291 0.98582 0.96344 1.00363 1.21624 1.00528 1.05565 0.88495 1.21137 0.79193 0.78003 0.92776 1.90722 1.59514 1.49075 1.49170 1.47130 1.33629 1.42012 1.08913 1.21261 0.98418 0.99042 0.80632 1.19653 0.95341 0.95388 0.94333 1.21278 1.21706 1.18631 0.95392 0.94499 1.25941 0.99141 0.98973 0.94796 1.70049 1.44775 1.37324 1.06399 0.85679 0.79005 0.78201 0.79862 1.20119 1.17074 1.20083 0.92507 0.88932 0.94038 0.87651 0.87651 0.91624 0.93101 0.92014 0.91055 0.88906 0.93130 0.89713 0.90953 0.90269 0.91137 0.86843 0.91191 0.86707 0.87150 0.92892 0.90150 0.95611 0.98190 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.89 113.37 1.23 1.51 16 2 O -0.43 -5.95 10.76 -126.21 -1.36 -7.31 16 3 C 0.21 2.13 7.07 113.37 0.80 2.93 16 4 O -0.42 -6.07 10.40 -126.21 -1.31 -7.39 16 5 C 0.07 0.75 5.82 71.98 0.42 1.17 16 6 C -0.11 -1.30 5.61 30.59 0.17 -1.13 16 7 C 0.05 0.60 3.34 86.30 0.29 0.88 16 8 N -0.52 -8.16 5.16 -859.52 -4.43 -12.59 16 9 C 0.05 0.79 6.17 86.67 0.53 1.33 16 10 C -0.15 -3.09 5.79 31.57 0.18 -2.90 16 11 C 0.13 3.26 3.11 46.24 0.14 3.40 16 12 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 13 C 0.07 1.33 3.51 45.13 0.16 1.49 16 14 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.14 -2.06 3.87 30.60 0.12 -1.94 16 16 C -0.12 -2.55 6.08 29.70 0.18 -2.37 16 17 C 0.50 17.01 7.47 87.77 0.66 17.67 16 18 O -0.60 -27.31 16.21 -3.02 -0.05 -27.36 16 19 N -0.59 -19.58 2.49 -799.63 -1.99 -21.57 16 20 C 0.13 5.50 5.02 86.38 0.43 5.93 16 21 C -0.01 -0.44 4.35 29.85 0.13 -0.31 16 22 C -0.53 -32.03 9.66 25.60 0.25 -31.79 16 23 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 24 C 0.01 0.54 5.47 84.66 0.46 1.01 16 25 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 26 Si 0.95 46.35 27.47 68.60 1.88 48.23 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 28 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 29 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 30 H 0.06 0.39 8.11 -2.39 -0.02 0.37 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 0.47 8.03 -2.39 -0.02 0.45 16 33 H 0.11 0.70 8.01 -2.39 -0.02 0.68 16 34 H 0.11 0.70 8.01 -2.39 -0.02 0.68 16 35 H 0.07 0.56 8.11 -2.39 -0.02 0.54 16 36 H 0.05 0.62 8.03 -2.39 -0.02 0.60 16 37 H 0.06 0.86 7.11 -2.39 -0.02 0.84 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 0.81 7.30 -2.38 -0.02 0.79 16 40 H 0.05 0.52 6.73 -2.39 -0.02 0.50 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 0.98 6.90 -2.38 -0.02 0.96 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.07 1.49 7.39 -2.39 -0.02 1.47 16 45 H 0.11 1.04 6.38 -2.39 -0.02 1.02 16 46 H 0.07 1.11 6.53 -2.39 -0.02 1.09 16 47 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 48 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.05 2.54 7.14 -2.38 -0.02 2.52 16 50 H 0.08 3.16 7.79 -2.39 -0.02 3.14 16 51 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 52 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 53 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -79.22 408.19 0.02 -79.20 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.81 Total: 12.29 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.16 Total: -3.12 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -6.12 Total: -94.55 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.72 Total: -42.06 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -79.22 0.02 -79.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273465798.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.643 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds