Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99698 * 2 1 4 4 O 1.42903 * 109.46914 * 75.00254 * 3 2 1 5 5 C 1.42900 * 114.00143 * 74.99991 * 4 3 2 6 6 C 1.53004 * 109.46864 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46786 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.46734 * 179.97438 * 7 6 5 9 9 C 1.48144 * 110.99978 * 69.87601 * 8 7 6 10 10 C 1.54077 * 107.15191 * 144.30313 * 9 8 7 11 11 C 1.54809 * 105.20333 * 358.93342 * 10 9 8 12 12 C 1.47663 * 110.96101 * 187.22352 * 8 7 6 13 13 C 1.53439 * 111.70644 * 81.78387 * 12 8 7 14 14 C 1.54748 * 101.46362 * 214.04305 * 13 12 8 15 15 N 1.46904 * 105.52471 * 24.38188 * 14 13 12 16 16 C 1.46495 * 124.37943 * 163.21281 * 15 14 13 17 17 C 1.52998 * 109.47460 * 89.97413 * 16 15 14 18 18 C 1.50701 * 109.47351 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99550 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99886 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99684 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99958 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47322 * 90.00180 * 22 20 18 24 24 H 1.48501 * 109.46669 * 209.99939 * 22 20 18 25 25 H 1.48500 * 109.47247 * 329.99714 * 22 20 18 26 26 C 1.34818 * 111.24650 * 343.20762 * 15 14 13 27 27 O 1.21280 * 125.16703 * 181.11810 * 26 15 14 28 28 H 1.09000 * 109.47070 * 59.99595 * 1 2 3 29 29 H 1.09000 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47608 * 300.00383 * 1 2 3 31 31 H 1.08993 * 109.47568 * 314.99624 * 3 2 1 32 32 H 1.09004 * 109.46511 * 194.99772 * 3 2 1 33 33 H 1.08996 * 109.47148 * 59.99477 * 5 4 3 34 34 H 1.09001 * 109.46691 * 299.99374 * 5 4 3 35 35 H 1.08997 * 109.47176 * 59.99469 * 6 5 4 36 36 H 1.09001 * 109.47106 * 299.99303 * 6 5 4 37 37 H 1.08996 * 109.46943 * 59.99833 * 7 6 5 38 38 H 1.09001 * 109.46973 * 299.99683 * 7 6 5 39 39 H 1.08998 * 109.90075 * 24.91596 * 9 8 7 40 40 H 1.09001 * 109.90150 * 263.67988 * 9 8 7 41 41 H 1.09007 * 110.29519 * 240.00303 * 10 9 8 42 42 H 1.09000 * 110.38449 * 117.90927 * 10 9 8 43 43 H 1.09002 * 110.74934 * 97.54423 * 11 10 9 44 44 H 1.09002 * 110.75152 * 220.71796 * 11 10 9 45 45 H 1.09005 * 111.02782 * 332.08166 * 13 12 8 46 46 H 1.08993 * 111.02858 * 95.95812 * 13 12 8 47 47 H 1.08998 * 110.23887 * 143.39863 * 14 13 12 48 48 H 1.08999 * 110.23481 * 265.37111 * 14 13 12 49 49 H 1.08998 * 109.47391 * 209.97395 * 16 15 14 50 50 H 1.09007 * 109.47027 * 329.97526 * 16 15 14 51 51 H 1.09004 * 109.47200 * 300.00185 * 17 16 15 52 52 H 1.08998 * 109.46883 * 60.00141 * 17 16 15 53 53 H 0.96997 * 119.99651 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8853 1.8824 1.3014 5 6 2.7911 1.3426 2.2659 6 6 2.5697 2.0305 3.6145 7 6 3.5391 1.4520 4.6472 8 7 3.3270 2.1130 5.9419 9 6 2.0290 1.7150 6.5348 10 6 2.2316 1.6351 8.0601 11 6 3.7224 1.9833 8.2904 12 6 4.3569 1.7051 6.9183 13 6 5.6560 2.5017 6.7389 14 6 6.7205 1.4420 7.1112 15 7 6.0838 0.1414 6.8638 16 6 6.8101 -1.1247 6.7394 17 6 6.9405 -1.7755 8.1179 18 6 7.6882 -3.0777 7.9900 19 1 8.0359 -3.4079 7.0223 20 6 7.9282 -3.8475 9.1084 21 7 8.5811 -4.9837 8.9968 22 14 7.3274 -3.2760 10.7823 23 1 5.9582 -3.7986 11.0217 24 1 8.2422 -3.7835 11.8362 25 1 7.3043 -1.7916 10.8196 26 6 4.7448 0.2637 6.7662 27 8 3.9712 -0.6524 6.5835 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.4942 1.9330 -0.7266 32 1 3.0648 1.2336 -0.2660 33 1 3.8162 1.5115 1.9361 34 1 2.6148 0.2720 2.3704 35 1 1.5447 1.8620 3.9444 36 1 2.7463 3.1010 3.5096 37 1 4.5643 1.6203 4.3174 38 1 3.3622 0.3816 4.7520 39 1 1.7279 0.7411 6.1489 40 1 1.2696 2.4608 6.3000 41 1 2.0191 0.6275 8.4175 42 1 1.5919 2.3579 8.5664 43 1 3.8362 3.0326 8.5630 44 1 4.1561 1.3381 9.0544 45 1 5.7747 2.8290 5.7060 46 1 5.6921 3.3500 7.4223 47 1 7.6025 1.5560 6.4810 48 1 6.9930 1.5345 8.1625 49 1 6.2646 -1.7925 6.0726 50 1 7.8031 -0.9355 6.3315 51 1 7.4861 -1.1078 8.7848 52 1 5.9476 -1.9647 8.5258 53 1 8.7497 -5.5255 9.7836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273466709.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -149.886618 kcal Electronic energy + Delta-G solvation = -31178.429828 eV Core-core repulsion = 27048.967998 eV Total energy + Delta-G solvation = -4129.461830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42331 -39.90271 -38.90640 -37.60860 -37.42245 -35.66821 -34.86251 -33.67641 -31.42210 -31.07227 -28.83457 -28.39995 -27.13838 -26.57370 -25.12811 -24.47846 -23.31463 -23.08558 -21.75954 -21.42276 -19.98238 -19.11174 -18.37235 -17.87429 -17.62805 -17.15500 -17.12851 -16.93872 -16.56136 -16.27670 -16.02652 -15.92500 -15.31530 -15.12530 -15.07031 -14.89584 -14.77307 -14.51878 -14.32198 -14.08990 -13.73277 -13.52356 -13.25856 -13.10224 -13.00938 -12.92280 -12.83554 -12.42673 -12.35338 -12.32522 -12.18959 -12.07778 -12.05991 -11.83070 -11.82374 -11.68930 -11.56238 -11.53384 -11.20639 -11.02703 -10.92202 -10.85331 -9.70252 -9.42074 -8.37410 -6.42597 1.28269 1.30079 1.41175 1.46045 2.05769 2.28322 2.42146 2.84799 2.94564 2.97491 3.35226 3.45154 3.60816 3.82786 3.93749 4.03144 4.09711 4.14709 4.18651 4.22414 4.26021 4.26365 4.32144 4.39051 4.43790 4.47312 4.51121 4.55196 4.59840 4.64574 4.69923 4.73505 4.76100 4.80698 4.81033 4.94321 5.01572 5.04929 5.07012 5.09397 5.13201 5.17394 5.24381 5.26585 5.44235 5.67783 5.74141 5.75092 5.83897 6.15814 6.21141 6.21413 6.63609 7.13194 7.22702 8.78934 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011668 B = 0.002726 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.153943 B =10269.047533 C =11498.031403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.430 6.430 3 C 0.205 3.795 4 O -0.411 6.411 5 C 0.067 3.933 6 C -0.094 4.094 7 C 0.041 3.959 8 N -0.468 5.468 9 C 0.036 3.964 10 C -0.129 4.129 11 C -0.099 4.099 12 C 0.056 3.944 13 C -0.096 4.096 14 C 0.089 3.911 15 N -0.619 5.619 16 C 0.148 3.852 17 C -0.012 4.012 18 C -0.534 4.534 19 H 0.039 0.961 20 C 0.010 3.990 21 N -0.944 5.944 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.274 1.274 25 H -0.245 1.245 26 C 0.488 3.512 27 O -0.576 6.576 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.103 0.897 43 H 0.123 0.877 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.130 0.870 47 H 0.100 0.900 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.090 0.910 51 H 0.031 0.969 52 H -0.005 1.005 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 24.999 -11.282 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.351 6.351 3 C 0.091 3.909 4 O -0.332 6.332 5 C -0.010 4.010 6 C -0.132 4.132 7 C -0.088 4.088 8 N -0.191 5.191 9 C -0.092 4.092 10 C -0.167 4.167 11 C -0.137 4.137 12 C -0.037 4.037 13 C -0.134 4.134 14 C -0.033 4.033 15 N -0.351 5.351 16 C 0.026 3.974 17 C -0.050 4.050 18 C -0.572 4.572 19 H 0.057 0.943 20 C -0.188 4.188 21 N -0.584 5.584 22 Si 0.771 3.229 23 H -0.204 1.204 24 H -0.200 1.200 25 H -0.169 1.169 26 C 0.275 3.725 27 O -0.455 6.455 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.141 0.859 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.148 0.852 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.064 0.936 50 H 0.108 0.892 51 H 0.049 0.951 52 H 0.013 0.987 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.513 24.863 -11.373 30.497 hybrid contribution -0.077 -2.242 0.641 2.333 sum -13.589 22.621 -10.731 28.487 Atomic orbital electron populations 1.22885 0.79506 1.03426 1.00985 1.87997 1.22172 1.30933 1.94021 1.24285 0.99751 0.82493 0.84323 1.87946 1.61157 1.62357 1.21700 1.22406 0.92922 0.96606 0.89060 1.21251 0.99147 1.01467 0.91295 1.22255 1.00356 0.96038 0.90150 1.64979 1.01349 1.51770 1.01008 1.22979 0.92426 0.99300 0.94512 1.22455 0.97182 1.01654 0.95432 1.22355 0.94457 1.04247 0.92659 1.22365 0.95795 0.89575 0.95970 1.22553 0.88327 0.97137 1.05401 1.22565 0.97603 0.80188 1.02930 1.48813 1.07375 1.09299 1.69637 1.21156 0.95992 0.82870 0.97402 1.19717 0.95047 0.94969 0.95273 1.21274 1.35902 1.05132 0.94927 0.94284 1.25932 0.94612 0.94630 1.03579 1.70043 1.42503 1.14336 1.31564 0.85697 0.78136 0.80265 0.78765 1.20419 1.19959 1.16881 1.21916 0.82564 0.92599 0.75386 1.90660 1.55998 1.47480 1.51395 0.91843 0.89242 0.94094 0.86649 0.88003 0.91790 0.94837 0.91974 0.89045 0.90328 0.95969 0.95616 0.87969 0.93809 0.87817 0.85865 0.92137 0.88398 0.85213 0.88188 0.90011 0.93570 0.89159 0.95100 0.98673 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.89 113.37 1.23 1.67 16 2 O -0.43 -9.03 10.76 -126.21 -1.36 -10.39 16 3 C 0.21 3.30 7.07 113.37 0.80 4.10 16 4 O -0.41 -8.41 10.40 -126.21 -1.31 -9.72 16 5 C 0.07 1.42 5.82 71.98 0.42 1.83 16 6 C -0.09 -1.93 5.64 30.60 0.17 -1.76 16 7 C 0.04 1.00 3.83 86.30 0.33 1.33 16 8 N -0.47 -10.57 4.99 -842.55 -4.20 -14.77 16 9 C 0.04 0.82 5.29 86.43 0.46 1.28 16 10 C -0.13 -2.79 6.86 31.58 0.22 -2.58 16 11 C -0.10 -2.04 5.97 31.45 0.19 -1.85 16 12 C 0.06 1.35 0.55 2.82 0.00 1.35 16 13 C -0.10 -1.58 6.34 31.34 0.20 -1.38 16 14 C 0.09 1.91 7.37 86.90 0.64 2.55 16 15 N -0.62 -20.66 2.95 -818.17 -2.41 -23.07 16 16 C 0.15 6.11 5.88 86.38 0.51 6.62 16 17 C -0.01 -0.57 4.37 29.85 0.13 -0.44 16 18 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 19 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 20 C 0.01 0.61 5.47 84.65 0.46 1.07 16 21 N -0.94 -60.02 13.96 21.45 0.30 -59.73 16 22 Si 0.95 45.71 27.47 68.60 1.88 47.60 16 23 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 26 C 0.49 17.08 5.56 87.45 0.49 17.56 16 27 O -0.58 -25.74 15.43 -3.03 -0.05 -25.78 16 28 H 0.06 0.69 8.11 -2.39 -0.02 0.67 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 0.69 8.03 -2.38 -0.02 0.67 16 31 H 0.12 1.22 8.01 -2.39 -0.02 1.20 16 32 H 0.10 1.34 8.01 -2.38 -0.02 1.32 16 33 H 0.06 1.17 8.11 -2.39 -0.02 1.15 16 34 H 0.03 0.85 8.03 -2.39 -0.02 0.83 16 35 H 0.06 1.37 7.52 -2.39 -0.02 1.35 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.08 1.82 7.36 -2.39 -0.02 1.80 16 38 H 0.02 0.73 5.87 -2.39 -0.01 0.72 16 39 H 0.03 0.75 7.42 -2.39 -0.02 0.73 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.12 1.65 7.77 -2.39 -0.02 1.63 16 44 H 0.06 1.46 8.01 -2.39 -0.02 1.44 16 45 H 0.10 1.42 7.43 -2.38 -0.02 1.41 16 46 H 0.13 1.27 7.63 -2.39 -0.02 1.25 16 47 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.05 2.14 7.95 -2.39 -0.02 2.12 16 50 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 51 H 0.03 1.43 7.20 -2.38 -0.02 1.41 16 52 H -0.01 -0.27 7.57 -2.39 -0.02 -0.29 16 53 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -79.76 414.76 0.15 -79.61 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.81 Total: 16.25 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 6.50 Total: 0.01 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -6.31 Total: -97.57 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -2.72 Total: -45.89 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.60 kcal Total: -79.76 0.15 -79.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273466709.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.281 kcal (2) G-P(sol) polarization free energy of solvation -79.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds