Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47430 * 2 1 4 4 C 1.52998 * 109.47504 * 239.99664 * 2 1 3 5 5 C 1.53002 * 109.46878 * 119.99501 * 2 1 3 6 6 H 1.09000 * 109.47126 * 184.63532 * 5 2 1 7 7 N 1.46502 * 109.47339 * 304.63981 * 5 2 1 8 8 C 1.34774 * 120.00013 * 274.99819 * 7 5 2 9 9 N 1.34770 * 120.00060 * 179.97438 * 8 7 5 10 10 O 1.21598 * 119.99855 * 0.02562 * 8 7 5 11 11 C 1.50707 * 109.46959 * 64.64008 * 5 2 1 12 12 O 1.21281 * 119.99899 * 278.73849 * 11 5 2 13 13 N 1.34781 * 119.99931 * 98.73899 * 11 5 2 14 14 C 1.46922 * 120.62605 * 174.50134 * 13 11 5 15 15 C 1.53193 * 108.77265 * 126.41474 * 14 13 11 16 16 C 1.53041 * 109.31535 * 54.63181 * 15 14 13 17 17 C 1.53002 * 109.46434 * 178.62674 * 16 15 14 18 18 N 1.46505 * 109.46008 * 58.65373 * 16 15 14 19 19 C 1.36934 * 120.00220 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99694 * 0.02562 * 19 18 16 21 21 C 1.38818 * 119.99894 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99685 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99895 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.47314 * 179.97438 * 23 21 19 25 25 H 1.48496 * 109.46927 * 300.00318 * 23 21 19 26 26 H 1.48503 * 109.46801 * 59.99988 * 23 21 19 27 27 C 1.53038 * 109.52679 * 298.64560 * 16 15 14 28 28 C 1.46923 * 120.63076 * 354.52443 * 13 11 5 29 29 H 1.08996 * 109.47313 * 300.00495 * 1 2 3 30 30 H 1.09005 * 109.46758 * 60.00471 * 1 2 3 31 31 H 1.08996 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46933 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46667 * 299.99818 * 3 2 1 34 34 H 1.09002 * 109.46910 * 59.99683 * 3 2 1 35 35 H 1.09008 * 109.46954 * 297.30305 * 4 2 1 36 36 H 1.09000 * 109.47305 * 57.29770 * 4 2 1 37 37 H 1.08999 * 109.47567 * 177.30324 * 4 2 1 38 38 H 0.97001 * 119.99759 * 95.00134 * 7 5 2 39 39 H 0.97001 * 120.00244 * 0.02562 * 9 8 7 40 40 H 0.97000 * 120.00208 * 179.97438 * 9 8 7 41 41 H 1.09001 * 109.59288 * 6.62855 * 14 13 11 42 42 H 1.08997 * 109.58764 * 246.19594 * 14 13 11 43 43 H 1.09004 * 109.49732 * 294.68326 * 15 14 13 44 44 H 1.08999 * 109.52195 * 174.59893 * 15 14 13 45 45 H 1.08995 * 109.46785 * 300.03170 * 17 16 15 46 46 H 1.08997 * 109.46345 * 60.02657 * 17 16 15 47 47 H 1.08992 * 109.47313 * 180.02562 * 17 16 15 48 48 H 0.97001 * 119.99449 * 359.97438 * 18 16 15 49 49 H 0.97002 * 120.00583 * 359.97438 * 22 21 19 50 50 H 1.08998 * 109.49920 * 181.30799 * 27 16 15 51 51 H 1.09001 * 109.49686 * 301.39898 * 27 16 15 52 52 H 1.08995 * 109.58761 * 353.37586 * 28 13 11 53 53 H 1.08998 * 109.58783 * 113.80047 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 1 3.1268 -0.6498 1.2919 7 7 1.4625 -0.0980 2.4429 8 6 2.0487 0.9866 2.9873 9 7 1.5172 1.5602 4.0850 10 8 3.0566 1.4481 2.4877 11 6 1.6336 -2.1713 1.1933 12 8 0.5140 -2.5005 1.5235 13 7 2.5144 -3.1024 0.7762 14 6 2.1749 -4.5308 0.8294 15 6 2.3907 -5.1409 -0.5592 16 6 3.8201 -4.8513 -1.0228 17 6 4.0501 -5.4884 -2.3947 18 7 4.7692 -5.4131 -0.0585 19 6 6.1161 -5.2774 -0.2649 20 1 6.4787 -4.7559 -1.1384 21 6 7.0154 -5.8102 0.6485 22 7 6.5734 -6.4462 1.7127 23 14 8.8528 -5.6258 0.3666 24 1 9.5919 -6.2767 1.4779 25 1 9.2233 -6.2698 -0.9191 26 1 9.2036 -4.1836 0.3171 27 6 4.0292 -3.3385 -1.1217 28 6 3.8323 -2.7081 0.2602 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.7168 -1.7621 -1.2252 36 1 1.6378 -0.2363 -2.1386 37 1 3.1290 -0.6796 -1.2737 38 1 0.6583 -0.4660 2.8412 39 1 0.7130 1.1922 4.4834 40 1 1.9393 2.3405 4.4771 41 1 1.1314 -4.6479 1.1218 42 1 2.8178 -5.0325 1.5527 43 1 1.6839 -4.7017 -1.2633 44 1 2.2349 -6.2186 -0.5118 45 1 3.9016 -6.5659 -2.3243 46 1 3.3440 -5.0705 -3.1122 47 1 5.0682 -5.2826 -2.7249 48 1 4.4435 -5.8811 0.7261 49 1 5.6193 -6.5423 1.8589 50 1 5.0400 -3.1331 -1.4742 51 1 3.3070 -2.9163 -1.8205 52 1 3.8823 -1.6224 0.1772 53 1 4.6103 -3.0610 0.9371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274388153.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -77.544385 kcal Electronic energy + Delta-G solvation = -33293.504256 eV Core-core repulsion = 29199.472171 eV Total energy + Delta-G solvation = -4094.032084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.29359 -40.77444 -39.44382 -37.82405 -36.28137 -35.06375 -34.39591 -33.92714 -32.36056 -30.62149 -29.54580 -28.35013 -28.16387 -27.68314 -25.70040 -24.37148 -24.13430 -22.33133 -21.58459 -20.18984 -19.87512 -19.38599 -18.87210 -18.33686 -17.93002 -17.24353 -16.83452 -16.71915 -16.30101 -15.89130 -15.61330 -15.36745 -15.30343 -15.24164 -15.01915 -14.81234 -14.51097 -14.21485 -14.04889 -13.85493 -13.56250 -13.23542 -13.04044 -12.90364 -12.80886 -12.71519 -12.61509 -12.55089 -12.32377 -12.24590 -12.15556 -11.93041 -11.90257 -11.74172 -11.63585 -11.45764 -11.39696 -10.93495 -10.88982 -10.69022 -10.62711 -10.04949 -9.67998 -8.96796 -8.23422 -5.16854 1.26827 1.61056 1.68704 1.69492 1.84415 2.10291 2.21064 2.77058 3.24566 3.52093 3.54347 3.68434 3.69618 3.74280 3.89328 3.93580 4.05701 4.10801 4.19605 4.29673 4.35800 4.45919 4.57298 4.60348 4.69695 4.74522 4.79374 4.81670 4.89366 4.94285 4.97671 5.00469 5.01110 5.03077 5.10794 5.13277 5.19118 5.22950 5.30910 5.33042 5.42754 5.48084 5.52136 5.59909 5.77802 5.80811 6.02874 6.32821 6.63087 6.94796 7.01155 7.22544 7.62013 8.13769 8.25992 9.28134 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.003781 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.624796 B = 7404.421979 C = 8169.720738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C -0.120 4.120 4 C -0.151 4.151 5 C 0.157 3.843 6 H 0.092 0.908 7 N -0.722 5.722 8 C 0.703 3.297 9 N -0.847 5.847 10 O -0.624 6.624 11 C 0.520 3.480 12 O -0.561 6.561 13 N -0.591 5.591 14 C 0.120 3.880 15 C -0.120 4.120 16 C 0.193 3.807 17 C -0.143 4.143 18 N -0.735 5.735 19 C -0.298 4.298 20 H 0.068 0.932 21 C -0.107 4.107 22 N -0.984 5.984 23 Si 1.115 2.885 24 H -0.302 1.302 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.126 4.126 28 C 0.119 3.881 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.410 0.590 39 H 0.412 0.588 40 H 0.423 0.577 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.039 0.961 48 H 0.357 0.643 49 H 0.242 0.758 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.093 0.907 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.555 15.433 -3.047 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.177 4.177 4 C -0.209 4.209 5 C 0.047 3.953 6 H 0.110 0.890 7 N -0.379 5.379 8 C 0.402 3.598 9 N -0.417 5.417 10 O -0.505 6.505 11 C 0.308 3.692 12 O -0.440 6.440 13 N -0.323 5.323 14 C -0.003 4.003 15 C -0.158 4.158 16 C 0.103 3.897 17 C -0.202 4.202 18 N -0.378 5.378 19 C -0.430 4.430 20 H 0.086 0.914 21 C -0.298 4.298 22 N -0.633 5.633 23 Si 0.942 3.058 24 H -0.229 1.229 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.166 4.166 28 C -0.003 4.003 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.247 0.753 39 H 0.243 0.757 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.189 0.811 49 H 0.053 0.947 50 H 0.081 0.919 51 H 0.102 0.898 52 H 0.111 0.889 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.721 15.278 -2.984 20.751 hybrid contribution -1.632 -0.339 0.546 1.754 sum -15.352 14.939 -2.438 21.560 Atomic orbital electron populations 1.21802 0.92994 1.02053 1.02265 1.20844 0.97158 0.96162 0.92592 1.21769 1.00615 0.93820 1.01523 1.22159 1.01608 1.00065 0.97037 1.20791 0.99421 0.88171 0.86909 0.88972 1.44673 1.31848 1.30996 1.30405 1.16009 0.82608 0.80196 0.81031 1.42760 1.33393 1.35682 1.29825 1.90976 1.27685 1.66493 1.65356 1.20615 0.84472 0.87744 0.76401 1.90628 1.20469 1.82373 1.50545 1.48052 1.15908 1.06441 1.61856 1.21474 1.01228 0.79794 0.97781 1.22022 0.96360 1.01158 0.96277 1.19797 0.88427 0.91837 0.89619 1.22111 1.00899 0.99904 0.97274 1.42685 1.02236 1.67167 1.25683 1.20151 0.84571 1.31157 1.07084 0.91389 1.26734 1.08419 0.99576 0.95043 1.70989 1.14400 1.47661 1.30280 0.82753 0.71631 0.76264 0.75103 1.22871 1.20815 1.20777 1.22251 1.01945 0.96801 0.95626 1.21723 0.82836 0.99703 0.96072 0.92471 0.91276 0.93026 0.93489 0.91618 0.93194 0.92828 0.90173 0.91897 0.75332 0.75748 0.74373 0.89009 0.93342 0.89423 0.90734 0.94273 0.91178 0.94211 0.81063 0.94748 0.91918 0.89830 0.88868 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 7.94 71.98 0.57 -2.08 16 2 C -0.07 -1.42 0.62 -52.18 -0.03 -1.45 16 3 C -0.12 -2.65 7.07 71.98 0.51 -2.14 16 4 C -0.15 -3.07 6.29 71.98 0.45 -2.62 16 5 C 0.16 4.00 1.48 44.25 0.07 4.06 16 6 H 0.09 2.73 5.41 -2.39 -0.01 2.71 16 7 N -0.72 -16.04 4.05 -461.39 -1.87 -17.90 16 8 C 0.70 16.20 7.39 179.06 1.32 17.53 16 9 N -0.85 -11.43 8.88 -184.75 -1.64 -13.07 16 10 O -0.62 -19.34 14.31 -4.02 -0.06 -19.39 16 11 C 0.52 14.93 5.10 87.66 0.45 15.37 16 12 O -0.56 -17.50 14.20 -3.03 -0.04 -17.55 16 13 N -0.59 -17.90 2.61 -818.97 -2.14 -20.04 16 14 C 0.12 3.76 6.17 86.36 0.53 4.29 16 15 C -0.12 -3.52 4.96 30.67 0.15 -3.36 16 16 C 0.19 6.63 0.74 3.63 0.00 6.63 16 17 C -0.14 -4.67 8.44 71.98 0.61 -4.06 16 18 N -0.74 -33.06 4.13 -303.22 -1.25 -34.31 16 19 C -0.30 -15.28 8.68 84.04 0.73 -14.55 16 20 H 0.07 3.41 6.70 -2.91 -0.02 3.39 16 21 C -0.11 -5.94 5.50 84.86 0.47 -5.48 16 22 N -0.98 -60.11 13.70 21.65 0.30 -59.82 16 23 Si 1.11 51.39 29.92 68.60 2.05 53.44 16 24 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 27 C -0.13 -3.92 4.37 30.66 0.13 -3.78 16 28 C 0.12 3.80 4.83 86.35 0.42 4.22 16 29 H 0.06 1.08 7.48 -2.39 -0.02 1.06 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.05 1.19 6.43 -2.39 -0.02 1.18 16 32 H 0.05 1.19 7.82 -2.39 -0.02 1.17 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.19 5.65 -2.39 -0.01 1.18 16 35 H 0.05 1.20 5.51 -2.38 -0.01 1.18 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.31 6.33 -2.39 -0.02 1.30 16 38 H 0.41 8.00 8.02 -92.71 -0.74 7.26 16 39 H 0.41 3.11 8.84 -92.71 -0.82 2.29 16 40 H 0.42 4.70 8.93 -92.71 -0.83 3.87 16 41 H 0.09 2.76 7.00 -2.39 -0.02 2.75 16 42 H 0.05 1.76 6.94 -2.39 -0.02 1.75 16 43 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 47 H 0.04 1.42 7.27 -2.39 -0.02 1.41 16 48 H 0.36 17.39 5.29 -92.71 -0.49 16.90 16 49 H 0.24 14.73 6.77 -92.71 -0.63 14.10 16 50 H 0.06 2.14 7.31 -2.39 -0.02 2.12 16 51 H 0.08 2.13 6.26 -2.39 -0.01 2.12 16 52 H 0.09 2.65 3.76 -2.39 -0.01 2.64 16 53 H 0.05 1.92 7.74 -2.39 -0.02 1.90 16 Total: -1.00 -69.38 385.17 -0.03 -69.41 By element: Atomic # 1 Polarization: 48.41 SS G_CDS: -1.76 Total: 46.64 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.38 Total: 12.58 kcal Atomic # 7 Polarization: -138.54 SS G_CDS: -6.60 Total: -145.14 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.10 Total: -36.94 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 2.05 Total: 53.44 kcal Total: -69.38 -0.03 -69.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274388153.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.132 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds