Wall clock time and date at job start Sat Apr 11 2020 06:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99765 * 2 1 4 4 H 1.48495 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47589 * 300.00861 * 3 2 1 6 6 H 1.48508 * 109.47037 * 60.00607 * 3 2 1 7 7 C 1.38810 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99557 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46626 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47503 * 54.99967 * 11 10 9 13 13 C 1.53000 * 109.46950 * 294.99582 * 11 10 9 14 14 C 1.53005 * 109.46950 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.46863 * 60.00428 * 14 13 11 16 16 C 1.52997 * 109.47456 * 299.99773 * 15 14 13 17 17 C 1.53005 * 109.46818 * 175.00377 * 11 10 9 18 18 H 1.08996 * 109.47418 * 59.99537 * 17 11 10 19 19 N 1.46507 * 109.46743 * 299.99565 * 17 11 10 20 20 C 1.34774 * 119.99765 * 155.00432 * 19 17 11 21 21 O 1.21279 * 119.99931 * 359.97438 * 20 19 17 22 22 C 1.50700 * 119.99956 * 180.02562 * 20 19 17 23 23 C 1.52992 * 109.47257 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47465 * 179.97438 * 23 22 20 25 25 C 1.53002 * 109.47535 * 179.97438 * 24 23 22 26 26 N 1.46494 * 109.47001 * 180.02562 * 25 24 23 27 27 C 1.34784 * 119.99635 * 180.02562 * 26 25 24 28 28 N 1.34777 * 119.99908 * 179.97438 * 27 26 25 29 29 O 1.21579 * 120.00114 * 0.02562 * 27 26 25 30 30 H 0.96987 * 120.00484 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99917 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47273 * 60.00381 * 10 9 7 33 33 H 1.08993 * 109.47441 * 299.99733 * 10 9 7 34 34 H 1.09003 * 109.47685 * 300.00322 * 13 11 10 35 35 H 1.09004 * 109.47376 * 60.00516 * 13 11 10 36 36 H 1.09005 * 109.46855 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.47503 * 300.00385 * 14 13 11 38 38 H 1.09007 * 109.47471 * 59.99909 * 15 14 13 39 39 H 1.09005 * 109.47475 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.47268 * 300.00213 * 16 15 14 41 41 H 1.08995 * 109.47727 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99669 * 334.99904 * 19 17 11 43 43 H 1.08997 * 109.47392 * 59.99564 * 22 20 19 44 44 H 1.09004 * 109.46932 * 300.00225 * 22 20 19 45 45 H 1.09005 * 109.47124 * 59.99773 * 23 22 20 46 46 H 1.09004 * 109.47330 * 299.99977 * 23 22 20 47 47 H 1.09005 * 109.46889 * 59.99930 * 24 23 22 48 48 H 1.08996 * 109.47223 * 300.00709 * 24 23 22 49 49 H 1.09005 * 109.46767 * 60.00250 * 25 24 23 50 50 H 1.09002 * 109.47113 * 300.00590 * 25 24 23 51 51 H 0.96995 * 120.00292 * 0.27801 * 26 25 24 52 52 H 0.96999 * 120.00047 * 0.02562 * 28 27 26 53 53 H 0.97000 * 120.00317 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0010 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3802 -4.7127 -0.8432 13 6 0.2688 -4.8115 1.3059 14 6 -0.7250 -5.9749 1.3055 15 6 0.0365 -7.2959 1.1801 16 6 0.8317 -7.3042 -0.1269 17 6 1.8250 -6.1411 -0.1268 18 1 2.5089 -6.2481 0.7152 19 7 2.5865 -6.1489 -1.3784 20 6 3.6862 -6.9196 -1.4933 21 8 4.0456 -7.6063 -0.5605 22 6 4.4698 -6.9273 -2.7805 23 6 5.6606 -7.8786 -2.6470 24 6 6.4558 -7.8868 -3.9541 25 6 7.6471 -8.8377 -3.8204 26 7 8.4088 -8.8450 -5.0717 27 6 9.5082 -9.6162 -5.1868 28 7 10.2087 -9.6234 -6.3381 29 8 9.8675 -10.3060 -4.2523 30 1 -0.4850 0.8399 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 2.6849 -3.7145 0.8895 33 1 2.6849 -3.7145 -0.8905 34 1 0.9526 -4.9185 2.1480 35 1 -0.2733 -3.8701 1.3956 36 1 -1.2918 -5.9688 2.2366 37 1 -1.4088 -5.8683 0.4635 38 1 0.7204 -7.4026 2.0222 39 1 -0.6714 -8.1249 1.1803 40 1 0.1479 -7.1977 -0.9690 41 1 1.3738 -8.2455 -0.2165 42 1 2.2991 -5.5995 -2.1244 43 1 4.8304 -5.9207 -2.9924 44 1 3.8274 -7.2620 -3.5950 45 1 5.2996 -8.8851 -2.4354 46 1 6.3032 -7.5443 -1.8325 47 1 6.8168 -6.8804 -4.1661 48 1 5.8131 -8.2212 -4.7683 49 1 7.2864 -9.8442 -3.6082 50 1 8.2897 -8.5028 -3.0061 51 1 8.1240 -8.2922 -5.8161 52 1 9.9219 -9.0734 -7.0838 53 1 11.0002 -10.1781 -6.4209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275779705.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:22 Heat of formation + Delta-G solvation = -128.212846 kcal Electronic energy + Delta-G solvation = -29343.079619 eV Core-core repulsion = 25246.850385 eV Total energy + Delta-G solvation = -4096.229234 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19432 -40.80897 -39.42748 -37.02179 -36.41028 -35.13599 -34.95793 -34.08339 -33.67454 -31.21398 -31.01666 -29.51655 -26.96283 -25.38545 -24.72056 -23.27783 -22.32742 -21.99173 -21.93515 -21.30308 -20.61484 -19.25443 -19.15246 -18.24138 -17.72338 -17.25108 -17.09675 -16.71937 -16.36999 -15.83842 -15.74361 -15.60979 -15.38584 -15.26882 -15.17617 -14.98226 -14.71298 -14.57612 -14.19268 -13.88133 -13.64711 -13.34124 -13.26283 -12.94951 -12.76941 -12.67989 -12.62753 -12.44006 -12.17668 -12.07546 -12.05819 -11.91698 -11.85318 -11.53306 -11.51371 -11.50416 -11.33005 -11.11589 -10.94921 -10.74276 -10.66412 -9.96313 -9.92008 -8.97643 -7.94729 -5.22680 1.47109 1.48094 1.57722 1.76060 1.96199 2.16811 2.32954 2.55746 3.38738 3.57415 3.66385 3.78201 3.83269 3.88234 3.96682 4.05232 4.10805 4.27014 4.35596 4.39332 4.42423 4.47558 4.50519 4.52916 4.57962 4.61428 4.80063 4.83386 4.88983 4.89263 4.91163 5.05267 5.06363 5.13768 5.19171 5.25715 5.30766 5.32457 5.34448 5.42298 5.44581 5.49354 5.51205 5.54708 5.66482 5.91675 6.04567 6.27789 6.66546 7.12738 7.34803 7.36847 7.66310 8.10309 8.34914 9.28561 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009272 B = 0.002033 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.099967 B =13766.963692 C =16426.858900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.970 3.030 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.739 5.739 10 C 0.160 3.840 11 C -0.084 4.084 12 H 0.080 0.920 13 C -0.106 4.106 14 C -0.113 4.113 15 C -0.112 4.112 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.061 0.939 19 N -0.717 5.717 20 C 0.506 3.494 21 O -0.588 6.588 22 C -0.132 4.132 23 C -0.098 4.098 24 C -0.114 4.114 25 C 0.136 3.864 26 N -0.731 5.731 27 C 0.694 3.306 28 N -0.848 5.848 29 O -0.653 6.653 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.001 0.999 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.412 0.588 43 H 0.112 0.888 44 H 0.124 0.876 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.052 0.948 50 H 0.047 0.953 51 H 0.415 0.585 52 H 0.415 0.585 53 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.785 -19.050 -15.005 25.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.217 1.217 6 H -0.223 1.223 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.103 4.103 12 H 0.098 0.902 13 C -0.144 4.144 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.155 4.155 17 C 0.056 3.944 18 H 0.079 0.921 19 N -0.368 5.368 20 C 0.294 3.706 21 O -0.469 6.469 22 C -0.172 4.172 23 C -0.137 4.137 24 C -0.152 4.152 25 C 0.011 3.989 26 N -0.388 5.388 27 C 0.391 3.609 28 N -0.417 5.417 29 O -0.536 6.536 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.019 0.981 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.248 0.752 43 H 0.130 0.870 44 H 0.142 0.858 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.252 0.748 52 H 0.246 0.754 53 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.364 -19.932 -13.502 25.832 hybrid contribution 0.075 1.698 -0.474 1.764 sum 9.439 -18.234 -13.976 24.838 Atomic orbital electron populations 1.69801 1.06409 1.25942 1.59499 1.25500 0.96392 1.00850 1.03784 0.85126 0.78161 0.80080 0.76702 1.19357 1.21749 1.22278 1.19609 0.91316 0.85477 1.41089 0.91150 1.42527 1.05621 1.00837 1.89233 1.20766 0.93666 0.84992 0.97200 1.21419 0.96830 0.92648 0.99439 0.90153 1.21442 0.97955 0.98858 0.96178 1.21533 0.97397 0.93579 1.02567 1.21476 0.98892 0.97720 0.96880 1.21799 0.97476 0.97161 0.99102 1.20761 0.92488 0.94272 0.86925 0.92086 1.46124 1.27733 1.46182 1.16791 1.21417 0.80261 0.78180 0.90703 1.90680 1.69702 1.43810 1.42711 1.21705 0.97498 1.03493 0.94484 1.21152 0.95667 0.99466 0.97436 1.21678 0.95266 1.00092 0.98145 1.21163 0.92597 0.99974 0.85159 1.44934 1.27705 1.47990 1.18211 1.16316 0.80776 0.80276 0.83509 1.42792 1.32443 1.52022 1.14432 1.90949 1.72527 1.48770 1.41358 0.94011 0.79121 0.98087 0.95456 0.93007 0.93113 0.91154 0.91277 0.92569 0.90010 0.90560 0.92362 0.75180 0.87006 0.85831 0.92174 0.92994 0.89494 0.88808 0.92949 0.93455 0.74767 0.75373 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 2 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 3 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.24 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -36.44 5.33 -343.44 -1.83 -38.27 16 10 C 0.16 6.25 5.57 86.38 0.48 6.73 16 11 C -0.08 -2.53 1.80 -10.79 -0.02 -2.55 16 12 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.11 -3.23 5.08 30.60 0.16 -3.08 16 14 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 15 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 16 C -0.12 -2.61 5.49 30.58 0.17 -2.44 16 17 C 0.16 4.26 1.90 44.98 0.09 4.34 16 18 H 0.06 1.95 7.58 -2.39 -0.02 1.94 16 19 N -0.72 -16.23 4.31 -442.59 -1.91 -18.13 16 20 C 0.51 11.99 7.79 87.66 0.68 12.67 16 21 O -0.59 -19.14 15.64 -3.03 -0.05 -19.19 16 22 C -0.13 -1.85 5.70 29.85 0.17 -1.68 16 23 C -0.10 -1.52 4.50 30.59 0.14 -1.38 16 24 C -0.11 -1.05 5.33 30.59 0.16 -0.88 16 25 C 0.14 2.02 5.67 86.38 0.49 2.51 16 26 N -0.73 -8.47 5.56 -478.53 -2.66 -11.13 16 27 C 0.69 12.10 8.84 179.05 1.58 13.69 16 28 N -0.85 -6.31 8.88 -184.75 -1.64 -7.95 16 29 O -0.65 -19.17 17.18 -3.96 -0.07 -19.24 16 30 H 0.25 14.58 8.31 -92.72 -0.77 13.81 16 31 H 0.38 19.56 6.85 -92.71 -0.63 18.92 16 32 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 33 H 0.03 1.03 7.30 -2.39 -0.02 1.01 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.05 1.83 7.18 -2.38 -0.02 1.81 16 36 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.41 7.65 8.39 -92.71 -0.78 6.87 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 46 H 0.05 1.04 8.10 -2.38 -0.02 1.02 16 47 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.42 1.59 8.49 -92.71 -0.79 0.80 16 52 H 0.42 -0.02 8.84 -92.71 -0.82 -0.84 16 53 H 0.42 2.68 8.93 -92.71 -0.83 1.86 16 Total: -1.00 -81.55 423.87 -2.98 -84.53 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -2.90 Total: 32.28 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.77 Total: 7.08 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -7.75 Total: -133.10 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.12 Total: -38.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -81.55 -2.98 -84.53 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275779705.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.684 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds