Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46855 * 2 1 4 4 C 1.53004 * 109.47070 * 119.99963 * 2 1 3 5 5 H 1.08994 * 109.46778 * 295.91996 * 4 2 1 6 6 C 1.50701 * 109.46917 * 55.92247 * 4 2 1 7 7 O 1.21283 * 120.00036 * 101.70568 * 6 4 2 8 8 N 1.34771 * 119.99823 * 281.70172 * 6 4 2 9 9 C 1.46504 * 119.99760 * 175.13784 * 8 6 4 10 10 C 1.52996 * 109.47010 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.95712 * 72.86273 * 10 9 8 12 12 C 1.53941 * 113.76251 * 204.50762 * 10 9 8 13 13 C 1.53931 * 86.45805 * 137.98841 * 12 10 9 14 14 N 1.47966 * 113.76340 * 301.06967 * 10 9 8 15 15 C 1.46891 * 111.00039 * 108.09802 * 14 10 9 16 16 C 1.50698 * 109.47113 * 190.00225 * 15 14 10 17 17 O 1.21287 * 120.00131 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99887 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99723 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00061 * 359.97438 * 19 18 16 21 21 C 1.38949 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31412 * 119.99662 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 119.99995 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47469 * 59.99967 * 23 21 19 25 25 H 1.48505 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47439 * 299.99409 * 23 21 19 27 27 N 1.46900 * 109.46549 * 175.92159 * 4 2 1 28 28 C 1.46897 * 111.00034 * 321.90695 * 27 4 2 29 29 C 1.46900 * 110.99951 * 85.86620 * 27 4 2 30 30 H 1.09003 * 109.47084 * 295.15474 * 1 2 3 31 31 H 1.08993 * 109.46985 * 55.15514 * 1 2 3 32 32 H 1.08996 * 109.46927 * 175.15564 * 1 2 3 33 33 H 1.08998 * 109.46575 * 240.00443 * 2 1 3 34 34 H 1.09004 * 109.47505 * 313.97696 * 3 2 1 35 35 H 1.09001 * 109.47314 * 73.97280 * 3 2 1 36 36 H 1.08998 * 109.47070 * 193.97614 * 3 2 1 37 37 H 0.96996 * 120.00170 * 355.13825 * 8 6 4 38 38 H 1.09007 * 109.46870 * 60.00738 * 9 8 6 39 39 H 1.08997 * 109.47574 * 300.00329 * 9 8 6 40 40 H 1.09002 * 113.73513 * 252.40333 * 12 10 9 41 41 H 1.09001 * 113.72606 * 23.57361 * 12 10 9 42 42 H 1.08996 * 113.76180 * 90.65646 * 13 12 10 43 43 H 1.09006 * 113.75657 * 222.01443 * 13 12 10 44 44 H 1.08999 * 109.47262 * 310.00564 * 15 14 10 45 45 H 1.09004 * 109.47418 * 70.00174 * 15 14 10 46 46 H 0.96996 * 120.00393 * 359.97438 * 18 16 15 47 47 H 0.96998 * 119.99863 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.47202 * 67.22119 * 28 27 4 49 49 H 1.09000 * 109.46880 * 187.21534 * 28 27 4 50 50 H 1.09003 * 109.47357 * 307.21226 * 28 27 4 51 51 H 1.08992 * 109.47485 * 66.08749 * 29 27 4 52 52 H 1.08998 * 109.46717 * 186.08915 * 29 27 4 53 53 H 1.09001 * 109.46875 * 306.08018 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 1 1.7377 -0.1669 2.1377 6 6 1.4569 -2.1099 1.3008 7 8 2.1299 -3.0629 0.9694 8 7 0.1876 -2.2927 1.7151 9 6 -0.4144 -3.6274 1.6646 10 6 -1.8503 -3.5594 2.1884 11 1 -2.5342 -3.0741 1.4922 12 6 -2.3734 -4.8980 2.7400 13 6 -2.9885 -4.0758 3.8867 14 7 -1.9553 -3.0595 3.5771 15 6 -2.5215 -1.7045 3.6074 16 6 -2.3875 -1.1350 4.9962 17 8 -1.8715 -1.7934 5.8744 18 7 -2.8420 0.1056 5.2625 19 6 -2.7196 0.6239 6.5259 20 1 -2.2594 0.0379 7.3077 21 6 -3.1876 1.9031 6.8004 22 7 -3.7471 2.6162 5.8490 23 14 -3.0215 2.6089 8.5218 24 1 -1.5860 2.6638 8.8980 25 1 -3.5934 3.9791 8.5523 26 1 -3.7526 1.7454 9.4837 27 7 3.5058 -0.8071 1.2009 28 6 3.9733 -1.0614 -0.1682 29 6 4.1227 0.4074 1.7509 30 1 -0.3633 0.4368 0.9302 31 1 -0.3633 0.5871 -0.8434 32 1 -0.3633 -1.0240 -0.0868 33 1 1.8933 -0.5138 -0.8900 34 1 1.4883 2.0229 -0.7395 35 1 1.8936 1.8796 0.9877 36 1 3.1013 1.4527 -0.2482 37 1 -0.3274 -1.5407 2.0468 38 1 0.1659 -4.3114 2.2841 39 1 -0.4194 -3.9851 0.6350 40 1 -3.1126 -5.3780 2.0987 41 1 -1.5846 -5.5781 3.0618 42 1 -4.0069 -3.7409 3.6898 43 1 -2.8732 -4.5360 4.8681 44 1 -1.9850 -1.0706 2.9014 45 1 -3.5753 -1.7447 3.3313 46 1 -3.2550 0.6320 4.5603 47 1 -4.0735 3.5093 6.0405 48 1 3.7619 -0.1927 -0.7916 49 1 5.0473 -1.2475 -0.1567 50 1 3.4580 -1.9328 -0.5722 51 1 3.9026 0.4762 2.8162 52 1 5.2020 0.3647 1.6049 53 1 3.7212 1.2823 1.2396 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276866657.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -43.691030 kcal Electronic energy + Delta-G solvation = -31642.527851 eV Core-core repulsion = 27549.963758 eV Total energy + Delta-G solvation = -4092.564093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67795 -41.01547 -39.55931 -38.67337 -35.95190 -35.76675 -34.52101 -33.29923 -31.98770 -30.35430 -28.80339 -28.31889 -27.78480 -27.48448 -25.28628 -24.45247 -23.28070 -21.93330 -21.08456 -21.00904 -20.30673 -19.89317 -18.27575 -17.76916 -17.42221 -17.09541 -16.80128 -16.53069 -16.41454 -16.35978 -15.81846 -15.63837 -15.48760 -15.24794 -15.04079 -14.70293 -14.21242 -14.00521 -13.86586 -13.65032 -13.51380 -13.44865 -13.30904 -13.07017 -12.92289 -12.85031 -12.68139 -12.58615 -12.57771 -12.43262 -12.29539 -12.23065 -12.13722 -12.03359 -11.84068 -11.73631 -11.64983 -11.48008 -10.69558 -10.35007 -9.98734 -9.95863 -9.60427 -9.11042 -8.45355 -5.93221 1.39212 1.41569 1.51509 1.66034 2.06209 2.10455 2.29226 2.75307 3.09909 3.20871 3.36440 3.58855 3.66313 3.69778 3.79237 3.89264 4.07684 4.17337 4.23716 4.25080 4.29848 4.31940 4.36150 4.43803 4.44942 4.52572 4.54604 4.66712 4.69527 4.70226 4.73875 4.84713 4.86930 4.90471 4.93874 5.00184 5.00392 5.06652 5.14815 5.25636 5.30696 5.33310 5.38447 5.42438 5.56631 5.93123 5.94205 6.11458 6.13244 6.56138 6.63323 7.15670 7.29102 7.59261 8.16736 8.71574 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.003566 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.128477 B = 7850.949867 C = 9993.703771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.111 4.111 3 C -0.151 4.151 4 C 0.070 3.930 5 H 0.094 0.906 6 C 0.521 3.479 7 O -0.566 6.566 8 N -0.717 5.717 9 C 0.144 3.856 10 C 0.020 3.980 11 H 0.112 0.888 12 C -0.115 4.115 13 C 0.002 3.998 14 N -0.478 5.478 15 C 0.024 3.976 16 C 0.442 3.558 17 O -0.619 6.619 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.074 0.926 21 C -0.008 4.008 22 N -0.918 5.918 23 Si 0.986 3.014 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.274 1.274 27 N -0.547 5.547 28 C 0.027 3.973 29 C 0.006 3.994 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.402 0.598 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.085 0.915 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.058 0.942 52 H 0.078 0.922 53 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.161 -4.028 -18.046 19.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.131 4.131 3 C -0.208 4.208 4 C -0.043 4.043 5 H 0.112 0.888 6 C 0.308 3.692 7 O -0.444 6.444 8 N -0.370 5.370 9 C 0.020 3.980 10 C -0.089 4.089 11 H 0.129 0.871 12 C -0.153 4.153 13 C -0.126 4.126 14 N -0.201 5.201 15 C -0.108 4.108 16 C 0.229 3.771 17 O -0.504 6.504 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.559 5.559 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.199 1.199 27 N -0.270 5.270 28 C -0.121 4.121 29 C -0.142 4.142 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.077 0.923 52 H 0.097 0.903 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.641 -5.285 -16.993 18.995 hybrid contribution -1.283 1.732 0.297 2.176 sum 5.359 -3.553 -16.696 17.891 Atomic orbital electron populations 1.22046 0.93764 1.02676 1.03034 1.21650 0.97459 0.97147 0.96875 1.22143 1.01527 0.94378 1.02737 1.21795 0.89538 0.92415 1.00523 0.88764 1.20798 0.81120 0.91354 0.75959 1.90620 1.60060 1.43828 1.49927 1.46080 1.13876 1.11852 1.65151 1.21273 0.91695 0.84086 1.00929 1.23874 0.96266 0.97659 0.91137 0.87053 1.23239 1.00862 0.95093 0.96097 1.23951 0.94738 0.93679 1.00275 1.68412 1.36243 0.99947 1.15530 1.22394 1.00888 0.93587 0.93905 1.20812 0.82659 0.82289 0.91364 1.90508 1.49141 1.61085 1.49703 1.41908 1.53879 1.14061 1.11299 1.19557 1.38649 0.99293 0.88710 0.90810 1.25909 0.95981 0.95980 1.02929 1.69645 1.39996 1.12041 1.34186 0.85089 0.78601 0.77547 0.77730 1.19956 1.19353 1.19929 1.61716 1.04258 1.37905 1.23102 1.22470 1.00973 1.00690 0.87931 1.22846 1.00334 0.90827 1.00145 0.92406 0.90593 0.92086 0.90036 0.90824 0.92359 0.91381 0.76129 0.93163 0.89682 0.87431 0.89342 0.89911 0.91515 0.88021 0.89743 0.76987 0.91336 0.93314 0.91118 0.92321 0.92328 0.90279 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 7.89 71.98 0.57 -2.02 16 2 C -0.11 -1.99 1.96 -10.79 -0.02 -2.01 16 3 C -0.15 -2.26 7.40 71.98 0.53 -1.73 16 4 C 0.07 1.66 1.92 44.17 0.08 1.75 16 5 H 0.09 2.36 7.80 -2.39 -0.02 2.34 16 6 C 0.52 14.89 6.42 87.66 0.56 15.46 16 7 O -0.57 -19.91 15.08 -3.04 -0.05 -19.96 16 8 N -0.72 -18.03 3.99 -463.06 -1.85 -19.88 16 9 C 0.14 3.34 5.81 86.38 0.50 3.84 16 10 C 0.02 0.40 3.39 45.02 0.15 0.56 16 11 H 0.11 1.69 7.93 -2.39 -0.02 1.67 16 12 C -0.11 -2.11 7.83 31.24 0.24 -1.87 16 13 C 0.00 0.06 7.97 86.36 0.69 0.74 16 14 N -0.48 -14.25 5.33 -887.63 -4.73 -18.98 16 15 C 0.02 0.76 5.12 85.56 0.44 1.19 16 16 C 0.44 20.48 7.83 87.66 0.69 21.16 16 17 O -0.62 -34.62 16.01 -3.05 -0.05 -34.67 16 18 N -0.57 -28.49 5.29 -306.98 -1.62 -30.12 16 19 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 20 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 21 C -0.01 -0.42 5.50 84.93 0.47 0.05 16 22 N -0.92 -48.13 13.05 21.66 0.28 -47.85 16 23 Si 0.99 42.53 29.55 68.60 2.03 44.56 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 N -0.55 -13.30 4.58 -927.75 -4.25 -17.55 16 28 C 0.03 0.56 7.93 127.69 1.01 1.57 16 29 C 0.01 0.11 9.17 127.69 1.17 1.28 16 30 H 0.06 1.00 7.93 -2.39 -0.02 0.98 16 31 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 32 H 0.06 1.04 6.32 -2.39 -0.02 1.02 16 33 H 0.08 1.50 6.16 -2.39 -0.01 1.48 16 34 H 0.07 0.94 8.02 -2.39 -0.02 0.92 16 35 H 0.06 0.95 7.56 -2.39 -0.02 0.93 16 36 H 0.07 0.94 4.86 -2.39 -0.01 0.93 16 37 H 0.40 9.71 5.48 -92.71 -0.51 9.20 16 38 H 0.05 1.42 7.91 -2.38 -0.02 1.40 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.75 7.94 -2.39 -0.02 1.73 16 42 H 0.08 1.88 7.49 -2.39 -0.02 1.86 16 43 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.10 2.70 6.40 -2.39 -0.02 2.68 16 45 H 0.08 2.25 7.39 -2.38 -0.02 2.23 16 46 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 47 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 48 H 0.05 0.80 5.13 -2.39 -0.01 0.79 16 49 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.06 1.45 6.53 -2.39 -0.02 1.43 16 51 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 53 H 0.06 1.01 4.01 -2.39 -0.01 1.00 16 Total: -1.00 -74.39 405.13 -2.64 -77.04 By element: Atomic # 1 Polarization: 45.57 SS G_CDS: -0.31 Total: 45.26 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 7.90 Total: 22.15 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -12.17 Total: -134.38 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.09 Total: -54.63 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -74.39 -2.64 -77.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276866657.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.346 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds