Wall clock time and date at job start Sat Apr 11 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 H 1.08994 * 109.46933 * 57.31683 * 3 2 1 5 5 C 1.50695 * 109.47102 * 177.31936 * 3 2 1 6 6 O 1.21277 * 120.00210 * 97.91433 * 5 3 2 7 7 N 1.34777 * 120.00032 * 277.91472 * 5 3 2 8 8 C 1.46505 * 120.00221 * 180.02562 * 7 5 3 9 9 C 1.53005 * 110.34682 * 302.13878 * 8 7 5 10 10 C 1.54589 * 110.30901 * 64.27888 * 8 7 5 11 11 C 1.54937 * 102.92156 * 96.96133 * 10 8 7 12 12 N 1.48534 * 103.22649 * 37.41137 * 11 10 8 13 13 C 1.46896 * 111.00068 * 200.27809 * 12 11 10 14 14 C 1.50698 * 109.47142 * 287.39881 * 13 12 11 15 15 O 1.21291 * 120.00544 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00031 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00187 * 179.72356 * 16 14 13 18 18 H 1.08004 * 120.00150 * 0.02562 * 17 16 14 19 19 C 1.38958 * 120.00247 * 180.02562 * 17 16 14 20 20 N 1.31404 * 119.99920 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99647 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47326 * 90.00133 * 21 19 17 23 23 H 1.48504 * 109.47143 * 209.99819 * 21 19 17 24 24 H 1.48495 * 109.47406 * 329.99654 * 21 19 17 25 25 C 1.47893 * 105.82118 * 320.79511 * 12 11 10 26 26 N 1.46901 * 109.46528 * 297.31763 * 3 2 1 27 27 C 1.46903 * 110.99741 * 184.98673 * 26 3 2 28 28 C 1.46900 * 111.00216 * 308.93973 * 26 3 2 29 29 H 1.09002 * 109.47087 * 305.18905 * 1 2 3 30 30 H 1.08995 * 109.46775 * 65.18204 * 1 2 3 31 31 H 1.08995 * 109.47017 * 185.19134 * 1 2 3 32 32 H 1.08994 * 109.47211 * 239.99673 * 2 1 3 33 33 H 1.09000 * 109.46976 * 119.99678 * 2 1 3 34 34 H 0.97005 * 119.99869 * 359.97438 * 7 5 3 35 35 H 1.08996 * 109.47179 * 297.85537 * 9 8 7 36 36 H 1.08997 * 109.47170 * 57.86257 * 9 8 7 37 37 H 1.09002 * 109.46489 * 177.85798 * 9 8 7 38 38 H 1.09001 * 110.72482 * 215.31942 * 10 8 7 39 39 H 1.08999 * 110.72679 * 338.42373 * 10 8 7 40 40 H 1.08997 * 110.66886 * 278.97690 * 11 10 8 41 41 H 1.08999 * 110.66791 * 155.84881 * 11 10 8 42 42 H 1.09001 * 109.47044 * 167.39737 * 13 12 11 43 43 H 1.09000 * 109.47314 * 47.39564 * 13 12 11 44 44 H 0.97003 * 119.99950 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99567 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.92045 * 144.68234 * 25 12 11 47 47 H 1.09003 * 109.92035 * 265.78151 * 25 12 11 48 48 H 1.09003 * 109.46948 * 60.46712 * 27 26 3 49 49 H 1.08998 * 109.46972 * 180.46590 * 27 26 3 50 50 H 1.09005 * 109.47245 * 300.47179 * 27 26 3 51 51 H 1.08997 * 109.46963 * 65.11296 * 28 26 3 52 52 H 1.09002 * 109.47024 * 185.10822 * 28 26 3 53 53 H 1.08997 * 109.46977 * 305.10987 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6381 1.9700 0.8649 5 6 3.5456 1.4430 0.0664 6 8 4.1974 1.5715 -0.9482 7 7 4.1678 1.3005 1.2535 8 6 5.6314 1.3014 1.3182 9 6 6.2037 0.1896 0.4364 10 6 6.1870 2.6752 0.8778 11 6 6.4191 3.4033 2.2256 12 7 6.9034 2.3194 3.1184 13 6 6.7266 2.6824 4.5308 14 6 7.7327 3.7391 4.9076 15 8 8.5200 4.1493 4.0811 16 7 7.7577 4.2286 6.1631 17 6 8.6767 5.1859 6.5075 18 1 9.3804 5.5481 5.7726 19 6 8.7029 5.6901 7.8021 20 7 9.5835 6.6080 8.1320 21 14 7.4863 5.0631 9.0734 22 1 8.0687 3.8953 9.7821 23 1 7.1938 6.1407 10.0524 24 1 6.2293 4.6548 8.3964 25 6 6.1022 1.1250 2.7738 26 7 1.6040 2.1159 -1.2306 27 6 2.1741 3.4668 -1.3217 28 6 1.9461 1.3191 -2.4163 29 1 -0.3633 0.5922 0.8399 30 1 -0.3633 0.4313 -0.9327 31 1 -0.3633 -1.0234 0.0930 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6465 1.1980 2.0651 35 1 5.8638 -0.7780 0.8055 36 1 5.8623 0.3276 -0.5895 37 1 7.2926 0.2275 0.4652 38 1 7.1259 2.5561 0.3370 39 1 5.4577 3.2089 0.2685 40 1 5.4863 3.8234 2.6016 41 1 7.1762 4.1800 2.1179 42 1 6.8752 1.8005 5.1539 43 1 5.7190 3.0693 4.6831 44 1 7.1279 3.9009 6.8241 45 1 9.6014 6.9602 9.0356 46 1 6.7163 0.2286 2.8593 47 1 5.2418 1.0504 3.4389 48 1 3.2621 3.4019 -1.3336 49 1 1.8286 3.9458 -2.2378 50 1 1.8546 4.0548 -0.4613 51 1 1.3836 0.3856 -2.4013 52 1 1.6945 1.8804 -3.3162 53 1 3.0138 1.1001 -2.4113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278427354.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:44 Heat of formation + Delta-G solvation = -42.191286 kcal Electronic energy + Delta-G solvation = -31259.452736 eV Core-core repulsion = 27166.953677 eV Total energy + Delta-G solvation = -4092.499059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12584 -39.44045 -38.11717 -36.82752 -34.80830 -33.90835 -33.34058 -31.82303 -31.54880 -29.78795 -28.04388 -27.72588 -27.55467 -25.42297 -23.85645 -23.54676 -22.48669 -21.42437 -20.15943 -19.77050 -19.34998 -18.34925 -17.61536 -16.77805 -16.23740 -15.96018 -15.64804 -15.20900 -15.12332 -14.89858 -14.72754 -14.66244 -14.29315 -13.82000 -13.50796 -13.45209 -13.28033 -13.17541 -12.86107 -12.67140 -12.62649 -12.33988 -12.30991 -12.16093 -12.04957 -11.99473 -11.82656 -11.75598 -11.42092 -11.39119 -11.27874 -11.15776 -11.12194 -10.95530 -10.84789 -10.61410 -10.29489 -9.98510 -9.56896 -9.26858 -8.64676 -8.39262 -8.19406 -8.10777 -6.31679 -3.83027 2.29552 2.84558 3.00187 3.04964 3.13326 3.59945 3.72668 3.95816 4.09109 4.22542 4.38274 4.49710 4.60908 4.62119 4.76612 4.87341 4.88139 4.99479 5.12786 5.17557 5.22196 5.23354 5.34107 5.36033 5.38212 5.40449 5.53559 5.53873 5.54243 5.62124 5.64225 5.69124 5.71498 5.73766 5.80890 5.83708 5.90740 5.95351 5.99189 6.12217 6.14999 6.33601 6.39410 6.57446 6.66010 7.00501 7.02831 7.23745 7.57565 7.94994 8.13754 8.59709 8.94903 9.41740 9.83072 10.81548 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002295 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.994162 B =12198.425102 C =12563.608762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.064 3.936 4 H 0.102 0.898 5 C 0.490 3.510 6 O -0.530 6.530 7 N -0.718 5.718 8 C 0.163 3.837 9 C -0.153 4.153 10 C -0.118 4.118 11 C 0.040 3.960 12 N -0.487 5.487 13 C 0.034 3.966 14 C 0.454 3.546 15 O -0.557 6.557 16 N -0.593 5.593 17 C -0.304 4.304 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C 0.035 3.965 26 N -0.513 5.513 27 C 0.008 3.992 28 C 0.000 4.000 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.050 0.950 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.064 0.936 52 H 0.061 0.939 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.160 -15.329 -14.616 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.049 4.049 4 H 0.120 0.880 5 C 0.276 3.724 6 O -0.407 6.407 7 N -0.370 5.370 8 C 0.077 3.923 9 C -0.212 4.212 10 C -0.157 4.157 11 C -0.088 4.088 12 N -0.211 5.211 13 C -0.098 4.098 14 C 0.239 3.761 15 O -0.438 6.438 16 N -0.233 5.233 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.522 5.522 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.094 4.094 26 N -0.236 5.236 27 C -0.140 4.140 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.068 0.932 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.083 0.917 52 H 0.080 0.920 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.006 -14.843 -15.804 28.832 hybrid contribution -1.162 -0.263 1.962 2.295 sum -20.168 -15.106 -13.843 28.750 Atomic orbital electron populations 1.21659 0.94059 1.01235 1.02980 1.21573 0.97614 0.93128 1.02902 1.22022 0.89162 0.97691 0.96010 0.88031 1.21960 0.91421 0.75580 0.83473 1.90593 1.67365 1.48817 1.33925 1.46513 1.07015 1.73946 1.09559 1.21190 0.78918 0.96776 0.95430 1.22150 1.01387 0.96415 1.01199 1.22832 1.01629 0.94045 0.97187 1.23327 0.99043 0.95039 0.91354 1.64523 1.50753 1.03198 1.02616 1.22115 0.97836 0.99399 0.90481 1.19570 0.87579 0.85701 0.83202 1.90557 1.42200 1.61628 1.49396 1.42204 1.33010 1.38113 1.09939 1.19422 1.11643 1.14494 0.97666 0.86285 1.25037 0.97378 0.96618 0.97190 1.69620 1.34667 1.27716 1.20179 0.86672 0.81071 0.79461 0.82153 1.19618 1.20204 1.19613 1.23225 0.96523 0.96267 0.93356 1.62516 1.56706 1.02953 1.01392 1.22579 0.99577 0.89412 1.02413 1.22737 1.02301 0.97854 0.91890 0.92595 0.91513 0.92906 0.90935 0.91230 0.76834 0.92932 0.90333 0.91128 0.89823 0.90738 0.94506 0.88142 0.89196 0.93197 0.79808 0.91630 0.89062 0.93511 0.93176 0.91265 0.91837 0.91697 0.91967 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.62 37.16 0.36 -0.44 16 2 C -0.11 -0.71 4.90 -26.73 -0.13 -0.84 16 3 C 0.06 0.49 2.35 -68.86 -0.16 0.32 16 4 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 5 C 0.49 4.67 5.33 -10.99 -0.06 4.61 16 6 O -0.53 -6.51 8.97 5.56 0.05 -6.46 16 7 N -0.72 -6.23 5.15 -46.35 -0.24 -6.46 16 8 C 0.16 1.75 0.94 -130.46 -0.12 1.62 16 9 C -0.15 -1.62 8.15 37.16 0.30 -1.31 16 10 C -0.12 -1.54 5.85 -24.87 -0.15 -1.69 16 11 C 0.04 0.61 5.93 -1.90 -0.01 0.60 16 12 N -0.49 -7.53 4.90 -231.90 -1.14 -8.67 16 13 C 0.03 0.55 5.19 -4.98 -0.03 0.52 16 14 C 0.45 10.22 7.61 -10.99 -0.08 10.14 16 15 O -0.56 -14.85 14.64 5.55 0.08 -14.77 16 16 N -0.59 -14.01 5.09 -10.96 -0.06 -14.06 16 17 C -0.30 -8.55 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 21 Si 0.88 19.21 27.73 -169.99 -4.71 14.49 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 C 0.04 0.39 6.12 -2.76 -0.02 0.38 16 26 N -0.51 -4.42 4.53 -244.58 -1.11 -5.53 16 27 C 0.01 0.08 9.16 60.07 0.55 0.63 16 28 C 0.00 0.00 8.52 60.06 0.51 0.51 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.43 7.41 -51.93 -0.38 0.05 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.51 6.26 -51.93 -0.33 0.18 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.40 2.58 8.10 -40.82 -0.33 2.25 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.94 6.04 -51.93 -0.31 0.63 16 37 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 38 H 0.08 1.16 7.84 -51.93 -0.41 0.76 16 39 H 0.07 1.00 6.81 -51.93 -0.35 0.65 16 40 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 41 H 0.10 1.87 7.10 -51.93 -0.37 1.50 16 42 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 43 H 0.05 0.71 7.83 -51.93 -0.41 0.30 16 44 H 0.37 7.62 5.76 -40.82 -0.24 7.38 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.09 0.98 7.68 -51.93 -0.40 0.58 16 47 H 0.05 0.43 7.10 -51.93 -0.37 0.06 16 48 H 0.05 0.56 5.79 -51.93 -0.30 0.26 16 49 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.48 6.02 -51.93 -0.31 0.17 16 52 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 53 H 0.07 0.72 5.39 -51.93 -0.28 0.44 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -33.16 400.83 -8.55 -41.71 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -8.96 Total: 11.31 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 0.72 Total: 7.35 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -1.77 Total: -59.68 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.13 Total: -21.23 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.16 -8.55 -41.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278427354.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.479 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds