Wall clock time and date at job start Sat Apr 11 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 H 1.08994 * 109.46933 * 57.31683 * 3 2 1 5 5 C 1.50695 * 109.47102 * 177.31936 * 3 2 1 6 6 O 1.21277 * 120.00210 * 97.91433 * 5 3 2 7 7 N 1.34777 * 120.00032 * 277.91472 * 5 3 2 8 8 C 1.46505 * 120.00221 * 180.02562 * 7 5 3 9 9 C 1.53005 * 110.34682 * 302.13878 * 8 7 5 10 10 C 1.54589 * 110.30901 * 64.27888 * 8 7 5 11 11 C 1.54937 * 102.92156 * 96.96133 * 10 8 7 12 12 N 1.48534 * 103.22649 * 37.41137 * 11 10 8 13 13 C 1.46896 * 111.00068 * 200.27809 * 12 11 10 14 14 C 1.50698 * 109.47142 * 287.39881 * 13 12 11 15 15 O 1.21291 * 120.00544 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00031 * 179.97438 * 14 13 12 17 17 C 1.37094 * 120.00187 * 179.72356 * 16 14 13 18 18 H 1.08004 * 120.00150 * 0.02562 * 17 16 14 19 19 C 1.38958 * 120.00247 * 180.02562 * 17 16 14 20 20 N 1.31404 * 119.99920 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99647 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47326 * 90.00133 * 21 19 17 23 23 H 1.48504 * 109.47143 * 209.99819 * 21 19 17 24 24 H 1.48495 * 109.47406 * 329.99654 * 21 19 17 25 25 C 1.47893 * 105.82118 * 320.79511 * 12 11 10 26 26 N 1.46901 * 109.46528 * 297.31763 * 3 2 1 27 27 C 1.46903 * 110.99741 * 184.98673 * 26 3 2 28 28 C 1.46900 * 111.00216 * 308.93973 * 26 3 2 29 29 H 1.09002 * 109.47087 * 305.18905 * 1 2 3 30 30 H 1.08995 * 109.46775 * 65.18204 * 1 2 3 31 31 H 1.08995 * 109.47017 * 185.19134 * 1 2 3 32 32 H 1.08994 * 109.47211 * 239.99673 * 2 1 3 33 33 H 1.09000 * 109.46976 * 119.99678 * 2 1 3 34 34 H 0.97005 * 119.99869 * 359.97438 * 7 5 3 35 35 H 1.08996 * 109.47179 * 297.85537 * 9 8 7 36 36 H 1.08997 * 109.47170 * 57.86257 * 9 8 7 37 37 H 1.09002 * 109.46489 * 177.85798 * 9 8 7 38 38 H 1.09001 * 110.72482 * 215.31942 * 10 8 7 39 39 H 1.08999 * 110.72679 * 338.42373 * 10 8 7 40 40 H 1.08997 * 110.66886 * 278.97690 * 11 10 8 41 41 H 1.08999 * 110.66791 * 155.84881 * 11 10 8 42 42 H 1.09001 * 109.47044 * 167.39737 * 13 12 11 43 43 H 1.09000 * 109.47314 * 47.39564 * 13 12 11 44 44 H 0.97003 * 119.99950 * 359.97438 * 16 14 13 45 45 H 0.97002 * 119.99567 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.92045 * 144.68234 * 25 12 11 47 47 H 1.09003 * 109.92035 * 265.78151 * 25 12 11 48 48 H 1.09003 * 109.46948 * 60.46712 * 27 26 3 49 49 H 1.08998 * 109.46972 * 180.46590 * 27 26 3 50 50 H 1.09005 * 109.47245 * 300.47179 * 27 26 3 51 51 H 1.08997 * 109.46963 * 65.11296 * 28 26 3 52 52 H 1.09002 * 109.47024 * 185.10822 * 28 26 3 53 53 H 1.08997 * 109.46977 * 305.10987 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6381 1.9700 0.8649 5 6 3.5456 1.4430 0.0664 6 8 4.1974 1.5715 -0.9482 7 7 4.1678 1.3005 1.2535 8 6 5.6314 1.3014 1.3182 9 6 6.2037 0.1896 0.4364 10 6 6.1870 2.6752 0.8778 11 6 6.4191 3.4033 2.2256 12 7 6.9034 2.3194 3.1184 13 6 6.7266 2.6824 4.5308 14 6 7.7327 3.7391 4.9076 15 8 8.5200 4.1493 4.0811 16 7 7.7577 4.2286 6.1631 17 6 8.6767 5.1859 6.5075 18 1 9.3804 5.5481 5.7726 19 6 8.7029 5.6901 7.8021 20 7 9.5835 6.6080 8.1320 21 14 7.4863 5.0631 9.0734 22 1 8.0687 3.8953 9.7821 23 1 7.1938 6.1407 10.0524 24 1 6.2293 4.6548 8.3964 25 6 6.1022 1.1250 2.7738 26 7 1.6040 2.1159 -1.2306 27 6 2.1741 3.4668 -1.3217 28 6 1.9461 1.3191 -2.4163 29 1 -0.3633 0.5922 0.8399 30 1 -0.3633 0.4313 -0.9327 31 1 -0.3633 -1.0234 0.0930 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.6465 1.1980 2.0651 35 1 5.8638 -0.7780 0.8055 36 1 5.8623 0.3276 -0.5895 37 1 7.2926 0.2275 0.4652 38 1 7.1259 2.5561 0.3370 39 1 5.4577 3.2089 0.2685 40 1 5.4863 3.8234 2.6016 41 1 7.1762 4.1800 2.1179 42 1 6.8752 1.8005 5.1539 43 1 5.7190 3.0693 4.6831 44 1 7.1279 3.9009 6.8241 45 1 9.6014 6.9602 9.0356 46 1 6.7163 0.2286 2.8593 47 1 5.2418 1.0504 3.4389 48 1 3.2621 3.4019 -1.3336 49 1 1.8286 3.9458 -2.2378 50 1 1.8546 4.0548 -0.4613 51 1 1.3836 0.3856 -2.4013 52 1 1.6945 1.8804 -3.3162 53 1 3.0138 1.1001 -2.4113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278427354.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:43 Heat of formation + Delta-G solvation = -70.123985 kcal Electronic energy + Delta-G solvation = -31260.663989 eV Core-core repulsion = 27166.953677 eV Total energy + Delta-G solvation = -4093.710312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92748 -40.64963 -39.59737 -37.67059 -36.09140 -35.54481 -34.00285 -33.74051 -32.59600 -30.84610 -29.05462 -28.67872 -28.19445 -26.85903 -25.32406 -24.22106 -23.25355 -22.49110 -21.27294 -20.91813 -20.58263 -20.17656 -18.36176 -17.86536 -17.54572 -16.95244 -16.64753 -16.46244 -16.19052 -16.06712 -15.86437 -15.59821 -15.45132 -15.00850 -14.73619 -14.59188 -14.38094 -14.17522 -14.13594 -14.01206 -13.60348 -13.36455 -13.24567 -13.02500 -12.96989 -12.93579 -12.70806 -12.62950 -12.48363 -12.44936 -12.37126 -12.36282 -12.00584 -11.98372 -11.89693 -11.83016 -11.62468 -11.48730 -11.05482 -10.40710 -10.23793 -10.07216 -9.37686 -9.09186 -8.40514 -6.01513 1.29943 1.36577 1.45196 1.57991 1.97620 2.09328 2.23894 2.67419 2.95428 3.14584 3.21645 3.41913 3.65336 3.75374 3.89344 3.90877 4.09077 4.17297 4.19253 4.25279 4.27773 4.37124 4.45283 4.50559 4.54220 4.59569 4.62110 4.68834 4.72814 4.77805 4.82941 4.85175 4.91596 4.96024 5.01433 5.06950 5.07998 5.14363 5.18930 5.27488 5.29958 5.52395 5.54299 5.56431 5.82926 5.91389 5.92907 5.97922 6.02851 6.56592 6.60957 6.89780 7.26540 7.41041 7.99523 8.77383 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002295 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.994162 B =12198.425102 C =12563.608762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.067 3.933 4 H 0.118 0.882 5 C 0.489 3.511 6 O -0.560 6.560 7 N -0.707 5.707 8 C 0.173 3.827 9 C -0.147 4.147 10 C -0.111 4.111 11 C 0.045 3.955 12 N -0.515 5.515 13 C 0.046 3.954 14 C 0.450 3.550 15 O -0.609 6.609 16 N -0.593 5.593 17 C -0.327 4.327 18 H 0.052 0.948 19 C -0.018 4.018 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.229 1.229 25 C 0.040 3.960 26 N -0.513 5.513 27 C 0.012 3.988 28 C 0.005 3.995 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.026 0.974 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.077 0.923 52 H 0.062 0.938 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.310 -18.451 -12.646 33.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C -0.046 4.046 4 H 0.136 0.864 5 C 0.275 3.725 6 O -0.439 6.439 7 N -0.361 5.361 8 C 0.086 3.914 9 C -0.205 4.205 10 C -0.150 4.150 11 C -0.083 4.083 12 N -0.240 5.240 13 C -0.085 4.085 14 C 0.238 3.762 15 O -0.493 6.493 16 N -0.235 5.235 17 C -0.456 4.456 18 H 0.070 0.930 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.181 1.181 23 H -0.202 1.202 24 H -0.152 1.152 25 C -0.087 4.087 26 N -0.235 5.235 27 C -0.137 4.137 28 C -0.143 4.143 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.144 0.856 43 H 0.102 0.898 44 H 0.225 0.775 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.100 0.900 48 H 0.044 0.956 49 H 0.091 0.909 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.081 0.919 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.194 -17.999 -13.838 32.456 hybrid contribution 0.238 0.767 1.193 1.438 sum -22.956 -17.232 -12.645 31.366 Atomic orbital electron populations 1.21619 0.93436 1.01842 1.02606 1.21571 0.97989 0.91941 1.03249 1.22156 0.87611 0.98846 0.95984 0.86395 1.22361 0.92213 0.74793 0.83125 1.90608 1.68146 1.50003 1.35122 1.46350 1.06043 1.73558 1.10124 1.20962 0.80133 0.94916 0.95411 1.22069 1.00868 0.97300 1.00283 1.22693 1.00821 0.95664 0.95787 1.23122 0.97819 0.94492 0.92853 1.64392 1.52968 1.04384 1.02210 1.22053 0.96759 0.98306 0.91406 1.20936 0.87577 0.85674 0.81997 1.90548 1.44548 1.63339 1.50836 1.42019 1.32779 1.37595 1.11097 1.18975 1.12585 1.16843 0.97224 0.92989 1.26160 0.99749 0.96186 0.99546 1.69814 1.37185 1.29473 1.21272 0.85335 0.79070 0.78979 0.77917 1.18066 1.20191 1.15196 1.23262 0.97471 0.94336 0.93663 1.62557 1.56323 1.02746 1.01872 1.22532 0.98021 0.90090 1.03012 1.22673 1.01037 0.98444 0.92122 0.92056 0.92621 0.91992 0.91920 0.89584 0.74996 0.90912 0.92046 0.91931 0.91637 0.91412 0.93394 0.92861 0.85576 0.89778 0.77455 0.91197 0.87948 0.89999 0.95554 0.90901 0.91064 0.90471 0.91889 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.62 71.98 0.69 -0.44 16 2 C -0.11 -1.03 4.90 30.60 0.15 -0.88 16 3 C 0.07 0.85 2.35 44.17 0.10 0.95 16 4 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 5 C 0.49 8.41 5.33 87.66 0.47 8.87 16 6 O -0.56 -13.59 8.97 -3.02 -0.03 -13.62 16 7 N -0.71 -10.07 5.15 -418.95 -2.16 -12.23 16 8 C 0.17 3.32 0.94 4.48 0.00 3.33 16 9 C -0.15 -2.87 8.15 71.98 0.59 -2.28 16 10 C -0.11 -2.91 5.85 31.80 0.19 -2.73 16 11 C 0.04 1.38 5.93 86.65 0.51 1.89 16 12 N -0.51 -14.90 4.90 -887.61 -4.35 -19.26 16 13 C 0.05 1.33 5.19 85.56 0.44 1.78 16 14 C 0.45 20.17 7.61 87.66 0.67 20.84 16 15 O -0.61 -34.12 14.64 -3.06 -0.04 -34.16 16 16 N -0.59 -27.62 5.09 -306.98 -1.56 -29.18 16 17 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 18 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 19 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 20 N -0.94 -56.70 13.96 21.66 0.30 -56.40 16 21 Si 0.97 38.18 27.73 68.60 1.90 40.08 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 25 C 0.04 0.74 6.12 86.45 0.53 1.27 16 26 N -0.51 -8.08 4.53 -927.72 -4.20 -12.28 16 27 C 0.01 0.21 9.16 127.69 1.17 1.38 16 28 C 0.00 0.08 8.52 127.69 1.09 1.17 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.59 7.41 -2.39 -0.02 0.57 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.74 6.26 -2.39 -0.01 0.72 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.41 3.39 8.10 -92.70 -0.75 2.64 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 1.44 6.04 -2.39 -0.01 1.43 16 37 H 0.06 1.31 8.11 -2.39 -0.02 1.29 16 38 H 0.06 1.93 7.84 -2.39 -0.02 1.91 16 39 H 0.07 1.86 6.81 -2.39 -0.02 1.85 16 40 H 0.05 1.33 7.81 -2.39 -0.02 1.32 16 41 H 0.05 2.13 7.10 -2.39 -0.02 2.11 16 42 H 0.13 2.82 8.08 -2.39 -0.02 2.80 16 43 H 0.08 1.93 7.83 -2.39 -0.02 1.91 16 44 H 0.39 14.75 5.76 -92.71 -0.53 14.21 16 45 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 46 H 0.10 1.74 7.68 -2.39 -0.02 1.72 16 47 H 0.08 0.99 7.10 -2.39 -0.02 0.97 16 48 H 0.03 0.59 5.79 -2.39 -0.01 0.58 16 49 H 0.07 1.19 8.07 -2.39 -0.02 1.17 16 50 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 51 H 0.08 1.05 6.02 -2.39 -0.01 1.04 16 52 H 0.06 0.99 8.04 -2.39 -0.02 0.97 16 53 H 0.05 0.98 5.39 -2.39 -0.01 0.97 16 Total: -1.00 -80.80 400.83 -2.64 -83.45 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: -0.42 Total: 37.31 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 7.92 Total: 16.28 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -11.98 Total: -129.34 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.07 Total: -47.78 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Total: -80.80 -2.64 -83.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278427354.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.324 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds