Wall clock time and date at job start Sat Apr 11 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 C 1.50703 * 109.47084 * 120.00008 * 2 1 3 5 5 O 1.21279 * 119.99926 * 239.99962 * 4 2 1 6 6 N 1.34775 * 119.99773 * 60.00361 * 4 2 1 7 7 C 1.46504 * 119.99531 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.46883 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47006 * 180.02562 * 8 7 6 10 10 C 1.46846 * 111.00018 * 294.20961 * 9 8 7 11 11 C 1.53033 * 109.52460 * 174.16134 * 10 9 8 12 12 C 1.53124 * 109.27811 * 59.18358 * 11 10 9 13 13 N 1.46895 * 109.52283 * 182.44332 * 12 11 10 14 14 C 1.46903 * 111.00063 * 274.68056 * 13 12 11 15 15 C 1.50697 * 109.47341 * 180.02562 * 14 13 12 16 16 O 1.21287 * 119.99895 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00009 * 179.97438 * 15 14 13 18 18 C 1.37089 * 120.00166 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00230 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00320 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99966 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00318 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47469 * 89.99599 * 22 20 18 24 24 H 1.48502 * 109.47355 * 209.99800 * 22 20 18 25 25 H 1.48504 * 109.46888 * 329.99476 * 22 20 18 26 26 C 1.53125 * 109.15751 * 302.34732 * 12 11 10 27 27 C 1.46851 * 110.99682 * 170.00115 * 9 8 7 28 28 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46922 * 299.99751 * 1 2 3 30 30 H 1.09000 * 109.47140 * 60.00051 * 1 2 3 31 31 H 1.08998 * 109.47624 * 240.00417 * 2 1 3 32 32 H 1.08996 * 109.46884 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47050 * 300.00004 * 3 2 1 34 34 H 1.09001 * 109.46998 * 60.00295 * 3 2 1 35 35 H 0.96992 * 120.00503 * 359.97438 * 6 4 2 36 36 H 1.09001 * 109.46891 * 60.00097 * 7 6 4 37 37 H 1.08993 * 109.47378 * 299.99469 * 7 6 4 38 38 H 1.09001 * 109.46801 * 300.00349 * 8 7 6 39 39 H 1.09001 * 109.46998 * 59.99945 * 8 7 6 40 40 H 1.09002 * 109.46555 * 294.18280 * 10 9 8 41 41 H 1.09001 * 109.46296 * 54.14881 * 10 9 8 42 42 H 1.08997 * 109.50475 * 299.23909 * 11 10 9 43 43 H 1.09002 * 109.50799 * 179.12007 * 11 10 9 44 44 H 1.08998 * 109.57589 * 62.27874 * 12 11 10 45 45 H 1.00904 * 111.00052 * 150.72770 * 13 12 11 46 46 H 1.09003 * 109.46492 * 300.00301 * 14 13 12 47 47 H 1.08997 * 109.46913 * 59.99428 * 14 13 12 48 48 H 0.97001 * 119.99640 * 0.02562 * 17 15 14 49 49 H 0.97000 * 120.00331 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.50073 * 297.71107 * 26 12 11 51 51 H 1.08991 * 109.50379 * 177.59621 * 26 12 11 52 52 H 1.08989 * 109.46428 * 305.85572 * 27 9 8 53 53 H 1.09002 * 109.45912 * 65.83533 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -0.1210 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1956 -2.6915 2.6396 8 6 1.6850 -4.1339 2.6399 9 7 2.1746 -4.8263 3.8394 10 6 3.6359 -4.9674 3.8059 11 6 4.1230 -5.5592 5.1305 12 6 3.4646 -6.9247 5.3466 13 7 3.8832 -7.4716 6.6441 14 6 5.1616 -8.1857 6.5267 15 6 5.5576 -8.7319 7.8742 16 8 4.8451 -8.5444 8.8377 17 7 6.7033 -9.4288 8.0087 18 6 7.0638 -9.9253 9.2347 19 1 6.4294 -9.7584 10.0927 20 6 8.2452 -10.6433 9.3735 21 7 9.0169 -10.8469 8.3294 22 14 8.7360 -11.3204 11.0438 23 1 8.1776 -12.6866 11.2077 24 1 10.2169 -11.3762 11.1397 25 1 8.2038 -10.4367 12.1120 26 6 1.9427 -6.7571 5.3289 27 6 1.5187 -6.1305 3.9987 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.1489 -2.4721 0.8054 36 1 1.8326 -2.1777 3.5298 37 1 3.2855 -2.6916 2.6392 38 1 0.5950 -4.1334 2.6405 39 1 2.0476 -4.6478 1.7497 40 1 3.9183 -5.6289 2.9869 41 1 4.0919 -3.9888 3.6559 42 1 3.8532 -4.8914 5.9486 43 1 5.2061 -5.6784 5.0995 44 1 3.7654 -7.6053 4.5502 45 1 3.1691 -8.0700 7.0317 46 1 5.0549 -9.0077 5.8188 47 1 5.9302 -7.4987 6.1725 48 1 7.2732 -9.5784 7.2382 49 1 9.8415 -11.3484 8.4262 50 1 1.6384 -6.1082 6.1502 51 1 1.4680 -7.7319 5.4396 52 1 0.4371 -5.9967 3.9886 53 1 1.8112 -6.7866 3.1788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279424059.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:46 Heat of formation + Delta-G solvation = -110.855768 kcal Electronic energy + Delta-G solvation = -28997.225089 eV Core-core repulsion = 24901.748515 eV Total energy + Delta-G solvation = -4095.476574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.00543 -40.46572 -39.85748 -37.29224 -36.04000 -35.61135 -35.38521 -33.32710 -32.74788 -31.85811 -29.66828 -28.08530 -27.77619 -26.04213 -24.88501 -24.25917 -23.21962 -22.34602 -21.15145 -20.87972 -20.59681 -19.89920 -18.18040 -17.97081 -17.33116 -16.92975 -16.73510 -16.44396 -16.33876 -16.09481 -15.96207 -15.61477 -15.52082 -15.24268 -14.96876 -14.86533 -14.46115 -14.25780 -13.94595 -13.80802 -13.64602 -13.47898 -13.35637 -13.15702 -13.05033 -12.89323 -12.87650 -12.70715 -12.43453 -12.35393 -12.13886 -12.10888 -12.06501 -12.02138 -11.96554 -11.54884 -11.50092 -11.25574 -10.79790 -10.35066 -10.10249 -10.02730 -9.33283 -9.29011 -8.47610 -5.96596 1.37446 1.41294 1.54306 1.63886 2.03637 2.08639 2.28613 2.89181 3.03212 3.19502 3.47630 3.71685 3.75248 3.88800 3.94698 4.01005 4.06646 4.09017 4.21455 4.27624 4.32531 4.43478 4.44254 4.47488 4.52035 4.53936 4.56060 4.67207 4.76608 4.77542 4.86107 4.90569 4.92879 4.93836 4.97538 5.01075 5.08443 5.10441 5.26955 5.30926 5.33898 5.39377 5.41627 5.43920 5.91458 6.08041 6.11452 6.15138 6.43602 6.55253 6.59052 7.11440 7.26967 7.54666 8.10128 8.69785 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.001464 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.212965 B =19118.565498 C =19716.540599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.135 4.135 4 C 0.507 3.493 5 O -0.591 6.591 6 N -0.715 5.715 7 C 0.124 3.876 8 C 0.056 3.944 9 N -0.548 5.548 10 C 0.061 3.939 11 C -0.104 4.104 12 C 0.089 3.911 13 N -0.679 5.679 14 C 0.067 3.933 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.336 4.336 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.269 1.269 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.115 4.115 27 C 0.069 3.931 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.417 0.583 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.345 0.655 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.066 0.934 51 H 0.077 0.923 52 H 0.095 0.905 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 15.596 -25.479 35.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.193 4.193 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.368 5.368 7 C 0.000 4.000 8 C -0.072 4.072 9 N -0.274 5.274 10 C -0.068 4.068 11 C -0.142 4.142 12 C -0.020 4.020 13 N -0.312 5.312 14 C -0.065 4.065 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.466 4.466 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.153 4.153 27 C -0.059 4.059 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.140 0.860 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.255 0.745 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.165 0.835 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.095 0.905 52 H 0.113 0.887 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.256 16.873 -23.667 34.324 hybrid contribution 0.800 -1.898 -0.450 2.108 sum -17.456 14.975 -24.117 33.326 Atomic orbital electron populations 1.21805 0.91120 1.03684 1.03244 1.21364 0.98850 0.97236 0.95501 1.21639 1.00837 0.94407 1.02413 1.21436 0.79087 0.81818 0.88135 1.90709 1.40123 1.67220 1.49099 1.45813 1.53674 1.11860 1.25473 1.21176 0.98577 0.92598 0.87685 1.22148 1.01564 0.91987 0.91521 1.61746 1.05481 1.21392 1.38784 1.22090 0.87773 1.00574 0.96322 1.21552 0.99400 0.95882 0.97414 1.21657 0.95776 0.95664 0.88943 1.60089 1.04222 1.41226 1.25675 1.21549 0.94412 0.97698 0.92837 1.20882 0.82589 0.82361 0.91713 1.90487 1.54578 1.63316 1.42563 1.41928 1.20255 1.47987 1.10810 1.19683 1.06177 1.32295 0.88417 0.90355 1.26040 0.95282 0.97073 1.02751 1.69672 1.14030 1.41141 1.31238 0.84923 0.77647 0.78522 0.77210 1.19467 1.19493 1.19881 1.21729 0.93521 1.01322 0.98704 1.22017 0.99740 0.88231 0.95942 0.90426 0.93429 0.89566 0.85966 0.93619 0.89570 0.93759 0.74537 0.92727 0.92969 0.88245 0.92690 0.93888 0.90504 0.92319 0.92165 0.93411 0.83548 0.91690 0.88375 0.77000 0.91274 0.91514 0.90467 0.88659 0.93752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.09 71.98 0.65 0.02 16 2 C -0.11 -0.95 3.26 -11.54 -0.04 -0.99 16 3 C -0.14 -1.58 8.48 71.98 0.61 -0.97 16 4 C 0.51 8.44 7.15 87.66 0.63 9.07 16 5 O -0.59 -16.37 15.98 -3.03 -0.05 -16.42 16 6 N -0.72 -7.97 5.45 -463.05 -2.52 -10.49 16 7 C 0.12 1.88 5.60 86.38 0.48 2.36 16 8 C 0.06 0.60 5.07 86.31 0.44 1.03 16 9 N -0.55 -8.83 4.66 -896.37 -4.17 -13.00 16 10 C 0.06 1.11 5.29 86.32 0.46 1.57 16 11 C -0.10 -2.49 5.59 30.65 0.17 -2.32 16 12 C 0.09 2.13 2.56 45.00 0.12 2.25 16 13 N -0.68 -22.15 5.94 -495.15 -2.94 -25.09 16 14 C 0.07 2.39 5.97 85.56 0.51 2.90 16 15 C 0.44 21.37 7.82 87.66 0.69 22.06 16 16 O -0.62 -35.46 15.78 -3.05 -0.05 -35.50 16 17 N -0.57 -30.02 5.29 -307.00 -1.62 -31.64 16 18 C -0.34 -19.46 9.68 84.04 0.81 -18.64 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 21 N -0.92 -50.11 13.05 21.66 0.28 -49.82 16 22 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C -0.11 -2.24 5.36 30.65 0.16 -2.07 16 27 C 0.07 0.98 5.46 86.32 0.47 1.45 16 28 H 0.08 0.08 7.56 -2.39 -0.02 0.07 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.04 0.67 8.10 -2.39 -0.02 0.65 16 35 H 0.42 1.49 7.89 -92.71 -0.73 0.76 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.99 6.43 -2.39 -0.02 0.97 16 38 H 0.10 0.73 7.99 -2.39 -0.02 0.71 16 39 H 0.05 0.45 8.12 -2.39 -0.02 0.43 16 40 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 1.45 6.21 -2.39 -0.01 1.43 16 42 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.06 1.50 7.54 -2.39 -0.02 1.48 16 44 H 0.05 1.07 7.80 -2.39 -0.02 1.05 16 45 H 0.35 11.65 8.06 -89.69 -0.72 10.93 16 46 H 0.07 2.01 8.06 -2.39 -0.02 1.99 16 47 H 0.10 3.23 7.51 -2.39 -0.02 3.22 16 48 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 49 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 50 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.10 1.05 8.01 -2.39 -0.02 1.03 16 53 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -76.96 421.08 -3.68 -80.64 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -1.27 Total: 38.31 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.63 Total: 17.55 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -10.98 Total: -130.05 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.10 Total: -51.92 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -76.96 -3.68 -80.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279424059.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.213 kcal (2) G-P(sol) polarization free energy of solvation -76.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds