Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 C 1.53002 * 109.46762 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46762 * 180.02562 * 4 3 2 6 6 H 1.09007 * 109.47569 * 55.00041 * 5 4 3 7 7 N 1.46507 * 109.47370 * 295.00371 * 5 4 3 8 8 C 1.34778 * 119.99517 * 300.00133 * 7 5 4 9 9 N 1.34778 * 119.99919 * 180.02562 * 8 7 5 10 10 O 1.21590 * 120.00150 * 359.97438 * 8 7 5 11 11 C 1.50704 * 109.47315 * 175.00101 * 5 4 3 12 12 O 1.21280 * 119.99787 * 99.99826 * 11 5 4 13 13 N 1.34774 * 119.99786 * 280.00402 * 11 5 4 14 14 C 1.46920 * 120.63436 * 354.68753 * 13 11 5 15 15 C 1.52762 * 109.01099 * 233.58959 * 14 13 11 16 16 C 1.53044 * 109.37786 * 305.58427 * 15 14 13 17 17 C 1.53039 * 109.53604 * 61.24250 * 16 15 14 18 18 C 1.46932 * 120.62808 * 174.97272 * 13 11 5 19 19 H 1.08998 * 109.58152 * 246.15637 * 18 13 11 20 20 C 1.53002 * 109.58371 * 6.57367 * 18 13 11 21 21 N 1.46502 * 109.46485 * 181.12223 * 20 18 13 22 22 C 1.36939 * 119.99764 * 185.45018 * 21 20 18 23 23 H 1.08007 * 120.00293 * 0.02562 * 22 21 20 24 24 C 1.38806 * 120.00338 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99783 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00511 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47042 * 89.99645 * 26 24 22 28 28 H 1.48496 * 109.46997 * 209.99741 * 26 24 22 29 29 H 1.48505 * 109.46576 * 329.99830 * 26 24 22 30 30 H 1.09005 * 109.47051 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47043 * 300.00317 * 1 2 3 32 32 H 1.09002 * 109.46850 * 60.00020 * 1 2 3 33 33 H 1.08999 * 109.47043 * 239.99683 * 2 1 3 34 34 H 1.09002 * 109.46850 * 119.99980 * 2 1 3 35 35 H 1.08995 * 109.46940 * 59.99989 * 3 2 1 36 36 H 1.09002 * 109.47248 * 299.99736 * 3 2 1 37 37 H 1.08995 * 109.47064 * 60.00479 * 4 3 2 38 38 H 1.08997 * 109.47560 * 299.99621 * 4 3 2 39 39 H 0.96991 * 120.00289 * 120.00057 * 7 5 4 40 40 H 0.96998 * 119.99896 * 359.97438 * 9 8 7 41 41 H 0.96993 * 120.00151 * 180.02562 * 9 8 7 42 42 H 1.09000 * 109.58558 * 353.42447 * 14 13 11 43 43 H 1.08998 * 109.58624 * 113.84375 * 14 13 11 44 44 H 1.08999 * 109.56467 * 185.55425 * 15 14 13 45 45 H 1.08995 * 109.36109 * 65.49516 * 15 14 13 46 46 H 1.09000 * 109.46205 * 301.21810 * 16 15 14 47 47 H 1.09002 * 109.44535 * 181.25544 * 16 15 14 48 48 H 1.08998 * 109.49703 * 178.67867 * 17 16 15 49 49 H 1.08997 * 109.52522 * 58.60374 * 17 16 15 50 50 H 1.08993 * 109.47766 * 301.12224 * 20 18 13 51 51 H 1.09002 * 109.47034 * 61.13052 * 20 18 13 52 52 H 0.96998 * 120.00247 * 5.45257 * 21 20 18 53 53 H 0.97004 * 120.00255 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 1 3.6451 3.4238 0.8431 7 7 3.6929 3.5403 -1.2505 8 6 4.1179 3.0452 -2.4298 9 7 3.7623 3.6484 -3.5814 10 8 4.8230 2.0549 -2.4548 11 6 5.5819 2.8867 0.1257 12 8 6.2719 3.0400 -0.8599 13 7 6.1583 2.7179 1.3323 14 6 5.3392 2.6471 2.5499 15 6 5.8529 3.6758 3.5557 16 6 7.3489 3.4535 3.7902 17 6 8.1068 3.6419 2.4741 18 6 7.6183 2.6073 1.4555 19 1 7.8813 1.6061 1.7967 20 6 8.2695 2.8771 0.0975 21 7 9.7231 2.7399 0.2174 22 6 10.5296 3.0451 -0.8465 23 1 10.0941 3.3872 -1.7737 24 6 11.9069 2.9146 -0.7333 25 7 12.4378 2.4981 0.3968 26 14 13.0071 3.3315 -2.1842 27 1 13.3872 4.7656 -2.1212 28 1 14.2312 2.4924 -2.1344 29 1 12.2774 3.0679 -3.4505 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9331 0.9288 0.8908 39 1 3.1309 4.3305 -1.2305 40 1 3.2002 4.4387 -3.5614 41 1 4.0678 3.2919 -4.4301 42 1 4.3000 2.8656 2.3044 43 1 5.4126 1.6492 2.9822 44 1 5.3165 3.5645 4.4979 45 1 5.6917 4.6789 3.1609 46 1 7.5119 2.4418 4.1616 47 1 7.7119 4.1727 4.5245 48 1 9.1745 3.5065 2.6466 49 1 7.9249 4.6453 2.0893 50 1 7.8959 2.1602 -0.6335 51 1 8.0256 3.8885 -0.2278 52 1 10.1143 2.4329 1.0502 53 1 13.4002 2.4065 0.4759 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280462472.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -79.587249 kcal Electronic energy + Delta-G solvation = -32153.612251 eV Core-core repulsion = 28059.491581 eV Total energy + Delta-G solvation = -4094.120670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.95513 -40.48490 -38.28154 -37.30333 -36.51480 -35.16816 -34.47240 -33.81638 -33.68178 -31.57080 -31.13105 -28.31380 -27.30687 -25.55055 -24.91125 -23.75030 -22.91499 -22.41703 -21.82965 -21.19840 -20.01184 -19.55140 -19.03433 -18.17531 -17.68254 -17.00380 -16.68506 -16.44373 -16.27144 -15.73997 -15.58216 -15.44619 -15.38063 -15.13828 -14.97623 -14.93957 -14.49807 -14.32707 -14.24882 -14.00612 -13.65023 -13.48519 -13.44094 -13.09943 -12.87482 -12.80084 -12.57813 -12.21978 -12.16564 -12.11614 -12.00379 -11.90079 -11.80095 -11.69655 -11.53508 -11.42187 -11.34661 -11.05140 -10.98321 -10.56271 -10.36543 -9.59712 -9.48021 -8.96239 -7.99336 -5.27281 1.39141 1.42730 1.52152 1.71304 1.85736 2.20127 2.49090 2.54297 3.32521 3.50355 3.70842 3.80129 3.85696 3.92873 3.96047 4.04941 4.13726 4.18183 4.18675 4.29074 4.31362 4.45680 4.47101 4.57152 4.65382 4.73207 4.86054 4.86943 4.91212 5.00238 5.04412 5.08358 5.09445 5.15518 5.21189 5.27402 5.29349 5.34024 5.37258 5.41460 5.43866 5.51076 5.54795 5.57942 5.74588 6.00360 6.12206 6.23920 6.59764 7.24213 7.29044 7.41341 7.90183 8.04186 8.32440 9.24249 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011385 B = 0.003421 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.724798 B = 8183.051163 C = 9772.755572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.128 4.128 5 C 0.163 3.837 6 H 0.156 0.844 7 N -0.719 5.719 8 C 0.699 3.301 9 N -0.856 5.856 10 O -0.618 6.618 11 C 0.476 3.524 12 O -0.541 6.541 13 N -0.606 5.606 14 C 0.098 3.902 15 C -0.127 4.127 16 C -0.115 4.115 17 C -0.116 4.116 18 C 0.151 3.849 19 H 0.060 0.940 20 C 0.185 3.815 21 N -0.744 5.744 22 C -0.243 4.243 23 H 0.055 0.945 24 C -0.072 4.072 25 N -0.966 5.966 26 Si 0.975 3.025 27 H -0.281 1.281 28 H -0.285 1.285 29 H -0.279 1.279 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.418 0.582 40 H 0.411 0.589 41 H 0.414 0.586 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.009 0.991 51 H 0.006 0.994 52 H 0.373 0.627 53 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.981 3.285 7.286 32.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.137 4.137 4 C -0.167 4.167 5 C 0.053 3.947 6 H 0.173 0.827 7 N -0.377 5.377 8 C 0.397 3.603 9 N -0.426 5.426 10 O -0.497 6.497 11 C 0.263 3.737 12 O -0.416 6.416 13 N -0.342 5.342 14 C -0.023 4.023 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.155 4.155 18 C 0.047 3.953 19 H 0.078 0.922 20 C 0.059 3.941 21 N -0.389 5.389 22 C -0.375 4.375 23 H 0.073 0.927 24 C -0.264 4.264 25 N -0.617 5.617 26 Si 0.803 3.197 27 H -0.208 1.208 28 H -0.211 1.211 29 H -0.205 1.205 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.255 0.745 40 H 0.242 0.758 41 H 0.245 0.755 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.027 0.973 51 H 0.024 0.976 52 H 0.205 0.795 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -31.053 2.594 6.715 31.876 hybrid contribution 1.374 0.468 -1.317 1.960 sum -29.678 3.063 5.398 30.320 Atomic orbital electron populations 1.21736 0.94710 1.01777 1.02261 1.21525 0.96679 0.96983 1.01352 1.21485 0.92031 0.97035 1.03179 1.21920 0.97817 0.93831 1.03148 1.20920 0.88959 0.96987 0.87810 0.82702 1.44523 1.56253 1.33768 1.03198 1.16230 0.79195 0.82905 0.81978 1.42787 1.58420 1.34569 1.06805 1.90982 1.42222 1.29768 1.86705 1.21910 0.92544 0.76622 0.82605 1.90881 1.64139 1.47873 1.38747 1.48254 1.05615 1.72798 1.07540 1.22117 0.95535 1.00893 0.83735 1.21855 0.95063 0.99166 1.00380 1.21533 0.96042 1.02662 0.95015 1.21782 0.99795 0.97717 0.96188 1.21143 0.80390 0.98524 0.95242 0.92156 1.21001 0.81914 0.97034 0.94136 1.42729 1.01815 1.80521 1.13878 1.19447 0.89088 1.36001 0.92989 0.92692 1.25534 0.97676 1.02958 1.00270 1.69805 1.10756 1.54727 1.26421 0.85128 0.78167 0.77679 0.78724 1.20774 1.21079 1.20484 0.92918 0.91313 0.93008 0.94404 0.91538 0.88852 0.92267 0.93238 0.90040 0.74480 0.75832 0.75461 0.86327 0.90028 0.86976 0.91717 0.91251 0.90682 0.93072 0.93443 0.97281 0.97602 0.79488 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.13 -1.77 5.93 30.60 0.18 -1.59 16 3 C -0.10 -1.24 5.10 30.59 0.16 -1.09 16 4 C -0.13 -2.54 4.45 30.59 0.14 -2.41 16 5 C 0.16 3.22 2.18 44.24 0.10 3.32 16 6 H 0.16 1.44 6.31 -2.38 -0.02 1.43 16 7 N -0.72 -13.82 4.66 -461.38 -2.15 -15.97 16 8 C 0.70 19.60 7.59 179.05 1.36 20.96 16 9 N -0.86 -16.06 8.88 -184.74 -1.64 -17.70 16 10 O -0.62 -25.47 13.03 18.46 0.24 -25.23 16 11 C 0.48 15.54 6.60 87.66 0.58 16.12 16 12 O -0.54 -24.83 9.08 19.43 0.18 -24.65 16 13 N -0.61 -17.54 2.98 -795.87 -2.37 -19.91 16 14 C 0.10 1.54 5.73 86.22 0.49 2.04 16 15 C -0.13 -1.84 6.07 30.53 0.19 -1.66 16 16 C -0.11 -2.53 5.89 30.62 0.18 -2.35 16 17 C -0.12 -3.97 5.14 30.67 0.16 -3.81 16 18 C 0.15 5.81 3.02 44.97 0.14 5.95 16 19 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 20 C 0.18 9.65 4.09 86.38 0.35 10.00 16 21 N -0.74 -44.45 5.29 -343.45 -1.82 -46.27 16 22 C -0.24 -15.82 9.99 84.03 0.84 -14.98 16 23 H 0.06 3.64 7.83 -2.91 -0.02 3.62 16 24 C -0.07 -4.58 5.50 84.86 0.47 -4.12 16 25 N -0.97 -63.14 13.06 21.65 0.28 -62.86 16 26 Si 0.97 50.89 29.55 68.60 2.03 52.92 16 27 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.28 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 30 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.79 7.75 -2.39 -0.02 0.77 16 37 H 0.05 1.51 6.04 -2.39 -0.01 1.50 16 38 H 0.08 1.45 7.61 -2.39 -0.02 1.44 16 39 H 0.42 4.20 8.84 -92.72 -0.82 3.38 16 40 H 0.41 4.07 8.84 -92.71 -0.82 3.25 16 41 H 0.41 7.87 8.93 -92.71 -0.83 7.04 16 42 H 0.12 0.94 5.43 -2.39 -0.01 0.93 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 2.06 7.27 -2.39 -0.02 2.04 16 49 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.01 0.56 6.35 -2.39 -0.02 0.55 16 51 H 0.01 0.34 7.12 -2.39 -0.02 0.32 16 52 H 0.37 22.52 6.87 -92.71 -0.64 21.88 16 53 H 0.25 15.83 8.31 -92.70 -0.77 15.06 16 Total: -1.00 -96.74 404.38 -1.37 -98.11 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: -2.16 Total: 35.99 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 6.03 Total: 25.57 kcal Atomic # 7 Polarization: -155.01 SS G_CDS: -7.69 Total: -162.70 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: 0.42 Total: -49.88 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.03 Total: 52.92 kcal Total: -96.74 -1.37 -98.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280462472.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.524 kcal (2) G-P(sol) polarization free energy of solvation -96.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds