Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47475 * 2 1 4 4 H 1.09002 * 109.46371 * 303.11687 * 3 2 1 5 5 C 1.50696 * 109.47360 * 183.11704 * 3 2 1 6 6 O 1.21287 * 119.99935 * 249.55799 * 5 3 2 7 7 N 1.34769 * 120.00406 * 69.55717 * 5 3 2 8 8 C 1.46507 * 119.99832 * 359.97438 * 7 5 3 9 9 C 1.46502 * 120.00389 * 180.02562 * 7 5 3 10 10 C 1.52998 * 109.47156 * 269.99977 * 9 7 5 11 11 H 1.09002 * 112.74758 * 284.23124 * 10 9 7 12 12 C 1.53516 * 113.47511 * 153.37704 * 10 9 7 13 13 C 1.53512 * 83.57177 * 219.20826 * 12 10 9 14 14 N 1.47477 * 87.93498 * 26.02903 * 13 12 10 15 15 C 1.46902 * 110.99715 * 221.29358 * 14 13 12 16 16 C 1.50701 * 109.47199 * 265.96717 * 15 14 13 17 17 O 1.21291 * 119.99730 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99910 * 180.02562 * 16 15 14 19 19 C 1.37099 * 119.99923 * 179.97438 * 18 16 15 20 20 H 1.07996 * 119.99930 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99964 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99912 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47191 * 60.00090 * 23 21 19 25 25 H 1.48502 * 109.47166 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46889 * 299.99872 * 23 21 19 27 27 N 1.46905 * 109.47064 * 63.11044 * 3 2 1 28 28 C 1.46903 * 110.99666 * 56.91830 * 27 3 2 29 29 C 1.46896 * 110.99662 * 180.86929 * 27 3 2 30 30 H 1.09002 * 109.47161 * 302.89669 * 1 2 3 31 31 H 1.09003 * 109.46562 * 62.89878 * 1 2 3 32 32 H 1.09001 * 109.47443 * 182.89737 * 1 2 3 33 33 H 1.08998 * 109.47401 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47096 * 119.99901 * 2 1 3 35 35 H 1.08994 * 109.47135 * 270.00249 * 8 7 5 36 36 H 1.09002 * 109.46979 * 30.00535 * 8 7 5 37 37 H 1.08997 * 109.46878 * 150.00060 * 8 7 5 38 38 H 1.09004 * 109.47222 * 149.99975 * 9 7 5 39 39 H 1.09004 * 109.46766 * 30.00141 * 9 7 5 40 40 H 1.08999 * 114.17006 * 332.85929 * 12 10 9 41 41 H 1.08994 * 114.16581 * 105.37618 * 12 10 9 42 42 H 1.08999 * 113.47805 * 271.25596 * 13 12 10 43 43 H 1.09003 * 113.46967 * 140.78949 * 13 12 10 44 44 H 1.08997 * 109.47377 * 25.97324 * 15 14 13 45 45 H 1.09007 * 109.47183 * 145.96839 * 15 14 13 46 46 H 0.96998 * 119.99766 * 359.97438 * 18 16 15 47 47 H 0.97005 * 119.99629 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.47303 * 66.28532 * 28 27 3 49 49 H 1.09000 * 109.46701 * 186.29085 * 28 27 3 50 50 H 1.08997 * 109.47151 * 306.28577 * 28 27 3 51 51 H 1.08998 * 109.47533 * 52.98396 * 29 27 3 52 52 H 1.09003 * 109.47197 * 172.98343 * 29 27 3 53 53 H 1.09004 * 109.46951 * 292.97759 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6318 1.9721 -0.8608 5 6 3.5450 1.4432 -0.0773 6 8 4.2013 1.7924 0.8811 7 7 4.1618 1.0557 -1.2112 8 6 3.3691 0.6333 -2.3686 9 6 5.6249 1.0558 -1.2861 10 6 6.1097 2.4165 -1.7905 11 1 5.9621 2.5455 -2.8627 12 6 7.5262 2.7742 -1.3192 13 6 6.9345 4.1827 -1.1692 14 7 5.6142 3.5508 -0.9886 15 6 4.5725 4.2919 -1.7123 16 6 3.9211 5.2815 -0.7810 17 8 4.2887 5.3619 0.3721 18 7 2.9299 6.0772 -1.2294 19 6 2.3369 6.9771 -0.3820 20 1 2.6642 7.0487 0.6447 21 6 1.3155 7.7978 -0.8443 22 7 0.9183 7.7118 -2.0940 23 14 0.5080 9.0244 0.3101 24 1 1.5305 9.9749 0.8164 25 1 -0.5454 9.7732 -0.4214 26 1 -0.1035 8.2999 1.4530 27 7 1.6127 2.1130 1.2353 28 6 2.0842 1.3837 2.4202 29 6 2.0681 3.5094 1.2608 30 1 -0.3633 0.5582 0.8629 31 1 -0.3632 0.4682 -0.9149 32 1 -0.3634 -1.0263 0.0519 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1909 -0.4406 -2.3145 36 1 2.4151 1.1606 -2.3675 37 1 3.9117 0.8659 -3.2849 38 1 5.9537 0.2757 -1.9727 39 1 6.0394 0.8666 -0.2958 40 1 7.8140 2.3082 -0.3768 41 1 8.2891 2.6875 -2.0928 42 1 7.0081 4.7834 -2.0757 43 1 7.2882 4.7101 -0.2832 44 1 5.0213 4.8236 -2.5513 45 1 3.8220 3.5943 -2.0840 46 1 2.6363 6.0132 -2.1516 47 1 0.2049 8.2845 -2.4167 48 1 3.1721 1.4310 2.4669 49 1 1.6619 1.8366 3.3173 50 1 1.7682 0.3426 2.3556 51 1 1.7515 4.0116 0.3467 52 1 1.6351 4.0170 2.1228 53 1 3.1554 3.5357 1.3321 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316603433.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -26.897061 kcal Electronic energy + Delta-G solvation = -33627.388522 eV Core-core repulsion = 29535.552671 eV Total energy + Delta-G solvation = -4091.835852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85243 -40.87403 -39.57453 -37.75865 -36.44858 -35.85195 -33.80634 -33.24369 -32.04758 -30.27183 -28.58807 -28.22375 -27.49773 -27.04268 -25.31288 -24.57878 -23.89384 -21.94208 -21.03197 -20.54743 -19.95110 -19.82283 -18.23845 -17.70343 -17.34906 -17.03738 -16.87003 -16.45224 -16.35546 -15.99931 -15.80748 -15.57101 -15.36634 -15.17683 -14.83691 -14.39609 -14.13947 -14.05356 -13.88028 -13.74647 -13.50431 -13.30276 -13.16697 -12.97292 -12.84788 -12.72889 -12.64782 -12.59206 -12.51261 -12.41630 -12.33037 -12.25070 -12.15857 -11.93256 -11.74289 -11.58683 -11.51888 -11.42255 -10.97639 -10.29572 -9.93382 -9.68497 -9.29441 -9.00617 -8.42341 -5.88388 1.37505 1.38948 1.48821 1.83124 2.13023 2.16252 2.29688 2.89975 3.00294 3.23885 3.42632 3.58604 3.67069 3.85482 3.93533 4.03794 4.14503 4.22331 4.24144 4.27440 4.31411 4.33914 4.46487 4.51804 4.52166 4.58227 4.64325 4.70159 4.71386 4.76416 4.80101 4.81820 4.94347 4.96804 4.99657 5.04825 5.11168 5.15759 5.25499 5.26812 5.32316 5.43826 5.46654 5.56111 5.79871 5.96144 5.99007 6.06688 6.20371 6.56278 6.67253 7.20153 7.45201 7.62968 8.21802 8.75262 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009480 B = 0.005077 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.906847 B = 5513.758793 C = 7251.367442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.065 3.935 4 H 0.091 0.909 5 C 0.487 3.513 6 O -0.543 6.543 7 N -0.614 5.614 8 C 0.067 3.933 9 C 0.136 3.864 10 C 0.008 3.992 11 H 0.096 0.904 12 C -0.111 4.111 13 C -0.009 4.009 14 N -0.447 5.447 15 C 0.026 3.974 16 C 0.451 3.549 17 O -0.599 6.599 18 N -0.578 5.578 19 C -0.315 4.315 20 H 0.072 0.928 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.981 3.019 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.276 1.276 27 N -0.515 5.515 28 C 0.010 3.990 29 C 0.040 3.960 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.391 0.609 47 H 0.275 0.725 48 H 0.041 0.959 49 H 0.056 0.944 50 H 0.085 0.915 51 H 0.039 0.961 52 H 0.039 0.961 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -19.835 -6.844 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.048 4.048 4 H 0.109 0.891 5 C 0.273 3.727 6 O -0.420 6.420 7 N -0.348 5.348 8 C -0.074 4.074 9 C 0.013 3.987 10 C -0.103 4.103 11 H 0.114 0.886 12 C -0.149 4.149 13 C -0.138 4.138 14 N -0.170 5.170 15 C -0.106 4.106 16 C 0.238 3.762 17 O -0.483 6.483 18 N -0.216 5.216 19 C -0.445 4.445 20 H 0.090 0.910 21 C -0.210 4.210 22 N -0.563 5.563 23 Si 0.806 3.194 24 H -0.201 1.201 25 H -0.194 1.194 26 H -0.201 1.201 27 N -0.238 5.238 28 C -0.138 4.138 29 C -0.108 4.108 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.224 0.776 47 H 0.084 0.916 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.103 0.897 51 H 0.058 0.942 52 H 0.058 0.942 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.988 -19.575 -4.971 20.803 hybrid contribution 0.324 1.743 -0.590 1.869 sum 5.312 -17.832 -5.561 19.420 Atomic orbital electron populations 1.21627 0.93760 1.02045 1.02229 1.21648 0.97854 0.91326 1.03562 1.22048 0.89496 0.98773 0.94482 0.89071 1.22015 0.91462 0.76274 0.82904 1.90648 1.67602 1.46424 1.37288 1.47965 1.06928 1.66261 1.13693 1.22143 0.96184 1.01157 0.87963 1.21480 0.79500 0.95561 1.02188 1.24011 0.95169 0.93541 0.97555 0.88617 1.23016 0.95443 0.93846 1.02631 1.23831 0.91295 0.98071 1.00595 1.68928 1.01985 1.05280 1.40802 1.22314 0.97425 0.96235 0.94609 1.20545 0.82459 0.84044 0.89159 1.90524 1.65762 1.71541 1.20476 1.41888 1.32696 1.34123 1.12922 1.19415 1.15843 1.14599 0.94631 0.91037 1.25840 0.97395 0.99866 0.97898 1.69656 1.30193 1.41071 1.15410 0.85165 0.78011 0.78160 0.78090 1.20057 1.19386 1.20137 1.62518 1.57135 1.01923 1.02210 1.22632 0.99957 0.98973 0.92223 1.22206 1.00249 0.88398 0.99971 0.93212 0.92624 0.90992 0.88587 0.91618 0.89969 0.91619 0.89148 0.86531 0.92041 0.89701 0.87305 0.90786 0.92821 0.91357 0.89447 0.77618 0.91575 0.94073 0.92524 0.89659 0.94247 0.94228 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.82 71.98 0.71 -1.98 16 2 C -0.11 -2.17 4.89 30.59 0.15 -2.02 16 3 C 0.06 1.88 1.42 44.17 0.06 1.95 16 4 H 0.09 2.78 6.87 -2.39 -0.02 2.76 16 5 C 0.49 15.19 5.83 87.66 0.51 15.70 16 6 O -0.54 -21.99 10.72 -3.05 -0.03 -22.02 16 7 N -0.61 -13.88 2.63 -846.75 -2.22 -16.11 16 8 C 0.07 0.94 9.06 127.77 1.16 2.10 16 9 C 0.14 2.78 5.58 86.38 0.48 3.26 16 10 C 0.01 0.17 3.35 42.18 0.14 0.31 16 11 H 0.10 1.71 7.91 -2.39 -0.02 1.69 16 12 C -0.11 -2.30 8.00 30.94 0.25 -2.05 16 13 C -0.01 -0.26 7.71 83.57 0.64 0.38 16 14 N -0.45 -15.15 4.42 -906.74 -4.01 -19.16 16 15 C 0.03 0.96 5.30 85.56 0.45 1.41 16 16 C 0.45 22.15 6.87 87.66 0.60 22.75 16 17 O -0.60 -34.50 14.24 -3.06 -0.04 -34.54 16 18 N -0.58 -30.18 5.29 -306.99 -1.62 -31.80 16 19 C -0.32 -18.22 9.68 84.04 0.81 -17.40 16 20 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -50.51 13.05 21.66 0.28 -50.23 16 23 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 N -0.52 -18.34 4.36 -927.72 -4.04 -22.38 16 28 C 0.01 0.32 8.90 127.69 1.14 1.46 16 29 C 0.04 1.82 8.34 127.69 1.07 2.89 16 30 H 0.05 1.18 7.61 -2.39 -0.02 1.16 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.44 5.64 -2.39 -0.01 1.42 16 34 H 0.07 1.39 6.05 -2.39 -0.01 1.38 16 35 H 0.08 0.75 7.12 -2.39 -0.02 0.74 16 36 H 0.07 1.04 6.12 -2.39 -0.01 1.02 16 37 H 0.09 0.89 8.07 -2.39 -0.02 0.87 16 38 H 0.12 1.38 8.07 -2.39 -0.02 1.36 16 39 H 0.06 1.61 7.15 -2.38 -0.02 1.59 16 40 H 0.08 1.92 7.94 -2.39 -0.02 1.90 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.99 7.42 -2.39 -0.02 1.97 16 43 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.24 7.30 -2.39 -0.02 2.22 16 45 H 0.09 2.96 7.89 -2.38 -0.02 2.94 16 46 H 0.39 19.61 7.90 -92.71 -0.73 18.88 16 47 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 48 H 0.04 1.57 5.46 -2.39 -0.01 1.56 16 49 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 50 H 0.08 2.27 5.84 -2.39 -0.01 2.26 16 51 H 0.04 1.95 7.55 -2.39 -0.02 1.93 16 52 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.05 2.59 4.58 -2.38 -0.01 2.58 16 Total: -1.00 -77.28 402.64 -0.84 -78.13 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: 0.18 Total: 42.74 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: 8.64 Total: 28.63 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -11.62 Total: -139.67 kcal Atomic # 8 Polarization: -56.49 SS G_CDS: -0.08 Total: -56.57 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.28 -0.84 -78.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316603433.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.228 kcal (2) G-P(sol) polarization free energy of solvation -77.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds