Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 N 1.46895 * 109.46969 * 180.02562 * 3 2 1 5 5 C 1.46894 * 111.00587 * 66.04415 * 4 3 2 6 6 C 1.46903 * 110.99912 * 189.99975 * 4 3 2 7 7 C 1.50699 * 109.47201 * 169.99607 * 6 4 3 8 8 O 1.21275 * 120.00067 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00130 * 179.97438 * 7 6 4 10 10 C 1.46503 * 120.00054 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00124 * 180.02562 * 9 7 6 12 12 C 1.53006 * 109.46998 * 89.99868 * 11 9 7 13 13 H 1.08998 * 112.74343 * 75.77560 * 12 11 9 14 14 C 1.53515 * 113.47279 * 206.61857 * 12 11 9 15 15 C 1.53513 * 83.57394 * 140.79206 * 14 12 11 16 16 N 1.47475 * 113.47610 * 304.99656 * 12 11 9 17 17 C 1.46908 * 110.99742 * 106.53424 * 16 12 11 18 18 C 1.50701 * 109.47034 * 170.00332 * 17 16 12 19 19 O 1.21290 * 120.00027 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99669 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99542 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00340 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99559 * 179.97438 * 21 20 18 24 24 N 1.31408 * 119.99772 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00347 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47567 * 89.99556 * 25 23 21 27 27 H 1.48500 * 109.47461 * 210.00018 * 25 23 21 28 28 H 1.48508 * 109.46988 * 329.99475 * 25 23 21 29 29 H 1.08994 * 109.47533 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47364 * 300.00296 * 1 2 3 31 31 H 1.09005 * 109.47132 * 60.00308 * 1 2 3 32 32 H 1.09002 * 109.46868 * 239.99885 * 2 1 3 33 33 H 1.08997 * 109.46783 * 119.99782 * 2 1 3 34 34 H 1.09002 * 109.47263 * 59.99642 * 3 2 1 35 35 H 1.09005 * 109.46886 * 299.99842 * 3 2 1 36 36 H 1.09001 * 109.47231 * 183.95476 * 5 4 3 37 37 H 1.09006 * 109.46913 * 303.95248 * 5 4 3 38 38 H 1.09000 * 109.47400 * 63.95078 * 5 4 3 39 39 H 1.08998 * 109.47534 * 49.99285 * 6 4 3 40 40 H 1.09005 * 109.46860 * 289.99530 * 6 4 3 41 41 H 1.09007 * 109.47177 * 270.00151 * 10 9 7 42 42 H 1.09002 * 109.47019 * 29.99910 * 10 9 7 43 43 H 1.09001 * 109.47429 * 150.00078 * 10 9 7 44 44 H 1.08993 * 109.47452 * 329.99947 * 11 9 7 45 45 H 1.09000 * 109.47175 * 209.99737 * 11 9 7 46 46 H 1.09002 * 114.17198 * 254.43601 * 14 12 11 47 47 H 1.08998 * 114.17174 * 27.14492 * 14 12 11 48 48 H 1.08998 * 113.47697 * 219.21226 * 15 14 12 49 49 H 1.09000 * 113.53068 * 88.75028 * 15 14 12 50 50 H 1.09001 * 109.46917 * 289.99562 * 17 16 12 51 51 H 1.08997 * 109.46952 * 49.99971 * 17 16 12 52 52 H 0.96996 * 120.00339 * 359.97438 * 20 18 17 53 53 H 0.97003 * 120.00090 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0350 0.8859 -1.2541 6 6 4.0355 2.7931 0.2375 7 6 5.5219 2.7182 0.4743 8 8 6.0871 1.6455 0.4469 9 7 6.2234 3.8435 0.7155 10 6 5.5410 5.1395 0.7470 11 6 7.6685 3.7708 0.9452 12 6 8.4043 3.9036 -0.3898 13 1 8.4212 4.9281 -0.7615 14 6 9.7815 3.2255 -0.3989 15 6 9.3809 2.8201 -1.8243 16 7 7.9722 2.9192 -1.3993 17 6 7.1523 3.5563 -2.4385 18 6 6.9357 2.5869 -3.5719 19 8 7.4174 1.4750 -3.5194 20 7 6.2077 2.9560 -4.6444 21 6 6.0111 2.0743 -5.6757 22 1 6.4393 1.0839 -5.6285 23 6 5.2600 2.4546 -6.7812 24 7 5.0712 1.6093 -7.7695 25 14 4.5189 4.1673 -6.8625 26 1 5.4825 5.0935 -7.5096 27 1 3.2634 4.1263 -7.6546 28 1 4.2213 4.6436 -5.4877 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1224 0.8325 -1.2000 37 1 3.6293 -0.1144 -1.4059 38 1 3.7436 1.5263 -2.0866 39 1 3.5494 3.2235 1.1130 40 1 3.8373 3.4189 -0.6327 41 1 5.5384 5.5731 -0.2532 42 1 4.5143 5.0014 1.0858 43 1 6.0627 5.8083 1.4316 44 1 7.9160 2.8130 1.4027 45 1 7.9720 4.5799 1.6094 46 1 10.6210 3.9192 -0.3515 47 1 9.8718 2.3891 0.2942 48 1 9.6843 1.8073 -2.0892 49 1 9.6592 3.5547 -2.5801 50 1 6.1890 3.8428 -2.0165 51 1 7.6639 4.4434 -2.8118 52 1 5.8228 3.8453 -4.6866 53 1 4.5472 1.8749 -8.5414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316604396.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -36.483604 kcal Electronic energy + Delta-G solvation = -32319.635302 eV Core-core repulsion = 28227.383747 eV Total energy + Delta-G solvation = -4092.251555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.70598 -40.56253 -39.67784 -38.27312 -36.27093 -35.99803 -34.11002 -33.81055 -32.23084 -30.60583 -28.75043 -27.90948 -27.64751 -27.06403 -25.18307 -24.79015 -23.41433 -21.67936 -21.34727 -20.61698 -20.32314 -19.94089 -18.03706 -17.82366 -17.31573 -17.11401 -16.90870 -16.65656 -16.54583 -16.19814 -15.83268 -15.48044 -15.42347 -15.18251 -14.86838 -14.75112 -14.40951 -14.06584 -14.00934 -13.95751 -13.75080 -13.63902 -13.17518 -13.04738 -12.98949 -12.88702 -12.83259 -12.62285 -12.50463 -12.46757 -12.34920 -12.28512 -12.04396 -11.95518 -11.91445 -11.57772 -11.49172 -11.43852 -10.49276 -10.46529 -10.28477 -9.75296 -9.36566 -9.27323 -8.44434 -6.05206 1.22583 1.29496 1.38167 1.88667 1.91765 2.09677 2.18078 2.68094 2.96303 3.10423 3.23249 3.57538 3.73800 3.84678 3.92781 4.05625 4.10366 4.17582 4.21196 4.25598 4.27289 4.33499 4.36681 4.43203 4.45120 4.48472 4.49894 4.51780 4.63815 4.67270 4.78018 4.79795 4.84656 4.86792 4.99083 5.01864 5.03858 5.12712 5.21779 5.26812 5.27055 5.40336 5.43552 5.50632 5.79972 5.89402 5.89549 6.07406 6.15353 6.56102 6.61570 6.85014 7.34876 7.52604 7.93597 8.73671 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006745 B = 0.005271 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4150.067459 B = 5311.042783 C = 8144.161923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.057 3.943 4 N -0.534 5.534 5 C 0.037 3.963 6 C 0.038 3.962 7 C 0.505 3.495 8 O -0.540 6.540 9 N -0.618 5.618 10 C 0.070 3.930 11 C 0.139 3.861 12 C 0.011 3.989 13 H 0.101 0.899 14 C -0.114 4.114 15 C -0.003 4.003 16 N -0.453 5.453 17 C 0.029 3.971 18 C 0.453 3.547 19 O -0.604 6.604 20 N -0.593 5.593 21 C -0.324 4.324 22 H 0.050 0.950 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.963 3.037 26 H -0.254 1.254 27 H -0.272 1.272 28 H -0.235 1.235 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.006 0.994 39 H 0.133 0.867 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.046 0.954 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.082 0.918 52 H 0.386 0.614 53 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 16.568 22.200 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.259 5.259 5 C -0.111 4.111 6 C -0.093 4.093 7 C 0.292 3.708 8 O -0.416 6.416 9 N -0.352 5.352 10 C -0.072 4.072 11 C 0.015 3.985 12 C -0.099 4.099 13 H 0.119 0.881 14 C -0.152 4.152 15 C -0.132 4.132 16 N -0.176 5.176 17 C -0.103 4.103 18 C 0.241 3.759 19 O -0.487 6.487 20 N -0.235 5.235 21 C -0.453 4.453 22 H 0.068 0.932 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.783 3.217 26 H -0.178 1.178 27 H -0.197 1.197 28 H -0.158 1.158 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.100 0.900 52 H 0.221 0.779 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.475 14.293 22.590 26.957 hybrid contribution -0.287 1.138 -2.283 2.567 sum -3.762 15.431 20.307 25.780 Atomic orbital electron populations 1.21686 0.93759 1.02303 1.02371 1.21533 0.96794 0.96092 1.01687 1.22283 0.85218 0.97929 1.01622 1.61704 1.08512 1.20977 1.34660 1.22248 1.01141 0.99006 0.88747 1.22132 0.92810 0.90859 1.03517 1.20753 0.89566 0.83992 0.76480 1.90720 1.71700 1.29907 1.49231 1.47809 1.08225 1.07375 1.71823 1.22085 0.98785 0.83432 1.02850 1.21480 0.78729 1.03412 0.94841 1.24039 0.94891 0.96119 0.94813 0.88083 1.23070 0.96632 1.00765 0.94752 1.23637 0.90310 1.00944 0.98302 1.68984 1.07394 1.33468 1.07751 1.22341 1.01210 0.94766 0.91984 1.20799 0.81687 0.89265 0.84194 1.90564 1.53213 1.24344 1.80602 1.42026 1.48992 1.14819 1.17680 1.18932 1.32524 0.96753 0.97124 0.93157 1.26090 0.97204 1.03855 0.94117 1.69809 1.40693 1.38132 1.08881 0.85400 0.78855 0.77106 0.80368 1.17843 1.19723 1.15841 0.92192 0.91090 0.92892 0.93957 0.91606 0.88196 0.95035 0.92361 0.92076 0.97592 0.84912 0.91855 0.92599 0.89872 0.88203 0.92154 0.86202 0.87295 0.89656 0.93509 0.91366 0.88714 0.90030 0.77865 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.83 5.87 30.60 0.18 -2.65 16 3 C 0.06 1.28 4.96 86.30 0.43 1.71 16 4 N -0.53 -15.77 4.50 -927.05 -4.17 -19.94 16 5 C 0.04 1.42 9.01 127.69 1.15 2.58 16 6 C 0.04 0.89 4.00 85.56 0.34 1.23 16 7 C 0.50 14.38 6.50 87.66 0.57 14.95 16 8 O -0.54 -21.55 13.32 -3.02 -0.04 -21.59 16 9 N -0.62 -12.05 2.74 -846.74 -2.32 -14.37 16 10 C 0.07 0.67 10.28 127.77 1.31 1.98 16 11 C 0.14 2.57 5.63 86.38 0.49 3.06 16 12 C 0.01 0.24 3.37 42.19 0.14 0.38 16 13 H 0.10 1.59 7.77 -2.39 -0.02 1.58 16 14 C -0.11 -2.42 8.00 30.94 0.25 -2.17 16 15 C 0.00 -0.09 6.71 83.57 0.56 0.47 16 16 N -0.45 -15.18 4.66 -906.72 -4.23 -19.41 16 17 C 0.03 0.99 5.31 85.56 0.45 1.45 16 18 C 0.45 22.13 7.62 87.66 0.67 22.80 16 19 O -0.60 -36.38 15.34 -3.06 -0.05 -36.43 16 20 N -0.59 -29.46 5.09 -306.98 -1.56 -31.03 16 21 C -0.32 -19.70 10.16 84.04 0.85 -18.85 16 22 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 23 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 24 N -0.93 -57.59 13.96 21.66 0.30 -57.29 16 25 Si 0.96 39.50 27.74 68.60 1.90 41.41 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.23 -8.16 6.52 99.48 0.65 -7.51 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.04 1.16 6.47 -2.39 -0.02 1.15 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.10 1.68 7.93 -2.39 -0.02 1.66 16 35 H 0.03 0.73 8.12 -2.38 -0.02 0.71 16 36 H 0.06 2.75 5.88 -2.39 -0.01 2.74 16 37 H 0.06 2.33 6.30 -2.38 -0.02 2.32 16 38 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.13 2.06 7.19 -2.39 -0.02 2.05 16 40 H 0.06 1.42 8.09 -2.38 -0.02 1.40 16 41 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.08 0.57 6.44 -2.39 -0.02 0.55 16 43 H 0.10 0.41 7.89 -2.39 -0.02 0.39 16 44 H 0.06 1.51 7.15 -2.39 -0.02 1.49 16 45 H 0.12 1.16 7.89 -2.39 -0.02 1.14 16 46 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.08 1.98 7.94 -2.39 -0.02 1.96 16 48 H 0.05 1.86 8.13 -2.39 -0.02 1.84 16 49 H 0.07 2.01 7.70 -2.39 -0.02 2.00 16 50 H 0.09 2.95 7.68 -2.39 -0.02 2.93 16 51 H 0.08 2.26 7.56 -2.39 -0.02 2.24 16 52 H 0.39 15.97 5.76 -92.71 -0.53 15.44 16 53 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -90.70 415.51 -1.28 -91.99 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: 0.30 Total: 41.86 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: 8.58 Total: 24.80 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -11.98 Total: -142.04 kcal Atomic # 8 Polarization: -57.93 SS G_CDS: -0.09 Total: -58.01 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.90 Total: 41.41 kcal Total: -90.70 -1.28 -91.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316604396.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.505 kcal (2) G-P(sol) polarization free energy of solvation -90.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds