Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47277 * 2 1 4 4 N 1.46499 * 109.47267 * 180.02562 * 3 2 1 5 5 C 1.34784 * 119.99971 * 180.02562 * 4 3 2 6 6 O 1.21583 * 119.99855 * 359.72712 * 5 4 3 7 7 N 1.34771 * 119.99547 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47277 * 300.00468 * 8 7 5 10 10 C 1.52997 * 109.46949 * 60.00592 * 8 7 5 11 11 C 1.50699 * 109.46931 * 180.02562 * 8 7 5 12 12 O 1.21279 * 119.99997 * 145.00374 * 11 8 7 13 13 N 1.34777 * 120.00179 * 325.00024 * 11 8 7 14 14 C 1.46500 * 120.00075 * 180.02562 * 13 11 8 15 15 C 1.53004 * 109.47026 * 180.02562 * 14 13 11 16 16 H 1.09001 * 112.84834 * 45.33158 * 15 14 13 17 17 C 1.53783 * 113.61502 * 176.52781 * 15 14 13 18 18 C 1.53779 * 87.08035 * 139.98265 * 17 15 14 19 19 H 1.09000 * 113.61386 * 89.20102 * 18 17 15 20 20 N 1.46500 * 113.61536 * 220.01928 * 18 17 15 21 21 C 1.36936 * 120.00367 * 205.00242 * 20 18 17 22 22 H 1.08001 * 119.99890 * 359.97438 * 21 20 18 23 23 C 1.38812 * 119.99905 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00417 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99722 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47443 * 89.99599 * 25 23 21 27 27 H 1.48498 * 109.47235 * 209.99974 * 25 23 21 28 28 H 1.48502 * 109.46914 * 329.99734 * 25 23 21 29 29 C 1.53779 * 113.61578 * 274.13574 * 15 14 13 30 30 H 1.08997 * 109.46785 * 299.99511 * 1 2 3 31 31 H 1.08992 * 109.47085 * 59.99748 * 1 2 3 32 32 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46840 * 239.99823 * 2 1 3 34 34 H 1.09005 * 109.47310 * 120.00213 * 2 1 3 35 35 H 1.09004 * 109.47330 * 60.00123 * 3 2 1 36 36 H 1.09005 * 109.47124 * 300.00327 * 3 2 1 37 37 H 0.96999 * 119.99984 * 359.97438 * 4 3 2 38 38 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 39 39 H 1.09001 * 109.47375 * 59.99817 * 9 8 7 40 40 H 1.09002 * 109.46777 * 180.02562 * 9 8 7 41 41 H 1.09000 * 109.47140 * 299.99799 * 9 8 7 42 42 H 1.09004 * 109.47261 * 59.99668 * 10 8 7 43 43 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 44 44 H 1.09001 * 109.47289 * 299.99924 * 10 8 7 45 45 H 0.97003 * 120.00267 * 0.02562 * 13 11 8 46 46 H 1.08999 * 109.47151 * 299.99950 * 14 13 11 47 47 H 1.08999 * 109.47227 * 60.00363 * 14 13 11 48 48 H 1.08995 * 113.61582 * 254.53346 * 17 15 14 49 49 H 1.09003 * 113.61350 * 25.43086 * 17 15 14 50 50 H 0.97005 * 119.99562 * 25.00046 * 20 18 17 51 51 H 0.96998 * 120.00290 * 180.02562 * 24 23 21 52 52 H 1.08995 * 113.61205 * 334.57195 * 29 15 14 53 53 H 1.08994 * 113.61246 * 105.47152 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5710 3.6626 -0.0043 7 7 5.5267 2.6096 -0.0003 8 6 6.2592 3.8784 -0.0004 9 6 5.8895 4.6806 -1.2496 10 6 5.8897 4.6806 1.2489 11 6 7.7408 3.6030 -0.0010 12 8 8.4940 4.3381 -0.6036 13 7 8.2289 2.5397 0.6681 14 6 9.6693 2.2723 0.6679 15 6 9.9551 1.0168 1.4943 16 1 9.2695 0.1989 1.2724 17 6 11.4350 0.5989 1.4884 18 6 11.2661 0.2676 2.9805 19 1 10.9404 -0.7558 3.1664 20 7 12.4151 0.6569 3.8018 21 6 12.6619 0.0114 4.9840 22 1 12.0092 -0.7846 5.3111 23 6 13.7503 0.3807 5.7624 24 7 14.5453 1.3510 5.3640 25 14 14.0873 -0.5005 7.3746 26 1 14.9754 -1.6645 7.1264 27 1 14.7486 0.4338 8.3206 28 1 12.8057 -0.9714 7.9587 29 6 10.1180 1.2931 2.9983 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9900 0.6024 -0.0006 38 1 6.0117 1.7695 -0.0010 39 1 4.8178 4.8798 -1.2495 40 1 6.4349 5.6244 -1.2498 41 1 6.1528 4.1091 -2.1396 42 1 6.1531 4.1090 2.1389 43 1 6.4350 5.6244 1.2491 44 1 4.8181 4.8798 1.2490 45 1 7.6265 1.9514 1.1498 46 1 10.0101 2.1182 -0.3560 47 1 10.1966 3.1215 1.1025 48 1 11.6399 -0.2734 0.8679 49 1 12.1211 1.4246 1.2993 50 1 13.0010 1.3721 3.5082 51 1 15.3061 1.6088 5.9078 52 1 10.4432 2.3089 3.2228 53 1 9.2612 0.9803 3.5950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316624850.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -71.051998 kcal Electronic energy + Delta-G solvation = -29777.742821 eV Core-core repulsion = 25683.992268 eV Total energy + Delta-G solvation = -4093.750553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93395 -40.65118 -39.82214 -37.35467 -36.22372 -36.09673 -35.01397 -33.90050 -32.17764 -31.87174 -29.00196 -28.26658 -26.97383 -26.43951 -25.96340 -24.43067 -22.54071 -22.39897 -22.12842 -20.91417 -20.34298 -19.77996 -19.02022 -18.43193 -17.28634 -16.89542 -16.80731 -16.56249 -16.47926 -16.09578 -15.67110 -15.64122 -15.53073 -15.21566 -15.04006 -14.83938 -14.51417 -14.02832 -13.78729 -13.52223 -13.39887 -13.36335 -13.21725 -13.20374 -13.01814 -12.92701 -12.90313 -12.78787 -12.65302 -12.38548 -12.18886 -12.06845 -11.97312 -11.69812 -11.63766 -11.54493 -11.32489 -11.07531 -10.82439 -10.69155 -10.42446 -10.17193 -9.86847 -8.96213 -7.93844 -5.21849 1.23463 1.47714 1.49120 1.57410 1.72972 1.95737 2.15181 2.57222 3.19160 3.37639 3.45342 3.72935 3.75526 3.87389 3.90715 3.97663 3.97962 4.14341 4.27833 4.37257 4.40576 4.43481 4.57135 4.57847 4.67251 4.72909 4.73522 4.77490 4.80772 4.82261 4.89468 4.99139 5.01169 5.06787 5.13037 5.20218 5.20689 5.23801 5.29873 5.30237 5.34846 5.39181 5.42575 5.53708 5.58491 5.75232 5.91682 6.28516 6.38630 7.02492 7.06887 7.34052 7.56824 8.13372 8.34140 9.29582 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.012291 B = 0.001983 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.535273 B =14116.360515 C =15542.996496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.137 3.863 4 N -0.733 5.733 5 C 0.706 3.294 6 O -0.617 6.617 7 N -0.729 5.729 8 C 0.190 3.810 9 C -0.145 4.145 10 C -0.157 4.157 11 C 0.518 3.482 12 O -0.565 6.565 13 N -0.705 5.705 14 C 0.135 3.865 15 C -0.093 4.093 16 H 0.127 0.873 17 C -0.137 4.137 18 C 0.142 3.858 19 H 0.082 0.918 20 N -0.730 5.730 21 C -0.241 4.241 22 H 0.080 0.920 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.972 3.028 26 H -0.287 1.287 27 H -0.299 1.299 28 H -0.267 1.267 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.412 0.588 38 H 0.410 0.590 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.414 0.586 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.371 0.629 51 H 0.249 0.751 52 H 0.053 0.947 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.238 -4.191 -14.445 31.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.013 3.987 4 N -0.390 5.390 5 C 0.406 3.594 6 O -0.497 6.497 7 N -0.389 5.389 8 C 0.099 3.901 9 C -0.203 4.203 10 C -0.215 4.215 11 C 0.303 3.697 12 O -0.443 6.443 13 N -0.358 5.358 14 C 0.012 3.988 15 C -0.112 4.112 16 H 0.145 0.855 17 C -0.176 4.176 18 C 0.032 3.968 19 H 0.100 0.900 20 N -0.368 5.368 21 C -0.373 4.373 22 H 0.098 0.902 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.801 3.199 26 H -0.215 1.215 27 H -0.226 1.226 28 H -0.192 1.192 29 C -0.195 4.195 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.248 0.752 38 H 0.247 0.753 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.251 0.749 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.083 0.917 50 H 0.203 0.797 51 H 0.058 0.942 52 H 0.072 0.928 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.248 -2.870 -14.707 31.976 hybrid contribution 1.192 -0.637 1.135 1.765 sum -27.056 -3.507 -13.572 30.471 Atomic orbital electron populations 1.21691 0.94383 1.02669 1.02181 1.21684 0.96985 0.94188 1.03632 1.21291 0.77636 0.98380 1.01376 1.45062 1.07600 1.06932 1.79359 1.15991 0.81471 0.84583 0.77384 1.90868 1.68471 1.31510 1.58860 1.45032 1.04653 1.08528 1.80653 1.20184 0.85849 0.85315 0.98721 1.21999 1.03205 1.00046 0.95078 1.22165 1.04216 1.00008 0.95111 1.20664 0.90154 0.80690 0.78215 1.90738 1.60097 1.48475 1.44972 1.45950 1.09228 1.28380 1.52214 1.21324 0.80094 0.96996 1.00428 1.22482 0.97475 0.97071 0.94193 0.85490 1.23321 0.95729 1.01294 0.97271 1.22016 0.87650 0.96828 0.90264 0.90015 1.42644 1.30394 1.41700 1.22024 1.19734 1.07538 1.12671 0.97312 0.90215 1.25590 0.98542 1.00306 1.02822 1.69820 1.18609 1.33385 1.40458 0.85156 0.77976 0.77245 0.79493 1.21466 1.22639 1.19204 1.23756 1.00029 1.00008 0.95750 0.92600 0.92534 0.91346 0.90376 0.90398 0.92703 0.92722 0.75175 0.75317 0.90179 0.91436 0.92483 0.91266 0.91413 0.89752 0.74897 0.90979 0.93417 0.90146 0.91657 0.79719 0.94189 0.92827 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.13 -0.65 6.05 30.59 0.19 -0.46 16 3 C 0.14 1.42 5.67 86.38 0.49 1.91 16 4 N -0.73 -7.39 5.56 -478.54 -2.66 -10.05 16 5 C 0.71 11.78 7.98 179.05 1.43 13.21 16 6 O -0.62 -15.15 12.55 -3.98 -0.05 -15.20 16 7 N -0.73 -9.75 4.86 -441.45 -2.15 -11.90 16 8 C 0.19 3.60 0.98 2.85 0.00 3.60 16 9 C -0.14 -3.09 7.93 71.98 0.57 -2.52 16 10 C -0.16 -3.08 8.38 71.98 0.60 -2.47 16 11 C 0.52 11.52 6.65 87.66 0.58 12.10 16 12 O -0.57 -17.47 16.09 -3.03 -0.05 -17.52 16 13 N -0.71 -12.27 5.25 -463.06 -2.43 -14.70 16 14 C 0.14 2.93 5.50 86.38 0.47 3.40 16 15 C -0.09 -1.94 3.75 -10.27 -0.04 -1.98 16 16 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 17 C -0.14 -3.81 7.40 31.12 0.23 -3.58 16 18 C 0.14 5.02 4.48 45.58 0.20 5.23 16 19 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 20 N -0.73 -35.74 5.40 -320.17 -1.73 -37.47 16 21 C -0.24 -13.03 9.97 84.03 0.84 -12.19 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 24 N -0.97 -59.58 13.06 21.65 0.28 -59.29 16 25 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 C -0.15 -4.50 7.45 31.18 0.23 -4.27 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.08 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.08 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.41 1.59 8.49 -92.71 -0.79 0.80 16 38 H 0.41 3.06 7.26 -92.71 -0.67 2.39 16 39 H 0.08 1.85 6.16 -2.39 -0.01 1.84 16 40 H 0.07 1.53 7.87 -2.39 -0.02 1.51 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.87 6.17 -2.39 -0.01 1.85 16 45 H 0.41 4.66 7.22 -92.71 -0.67 3.99 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.05 1.31 7.88 -2.39 -0.02 1.29 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 50 H 0.37 19.91 7.92 -92.70 -0.73 19.18 16 51 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 52 H 0.05 1.85 7.92 -2.39 -0.02 1.84 16 53 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.97 424.42 -1.70 -76.67 By element: Atomic # 1 Polarization: 36.03 SS G_CDS: -1.93 Total: 34.09 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 6.99 Total: 7.73 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -8.69 Total: -133.42 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.10 Total: -32.72 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.97 -1.70 -76.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316624850.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.623 kcal (2) G-P(sol) polarization free energy of solvation -74.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds