Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47148 * 2 1 4 4 H 1.09001 * 109.46965 * 306.40717 * 3 2 1 5 5 C 1.50695 * 109.46958 * 186.40632 * 3 2 1 6 6 O 1.21282 * 120.00132 * 258.17482 * 5 3 2 7 7 N 1.34781 * 120.00173 * 78.18083 * 5 3 2 8 8 C 1.46500 * 120.00137 * 179.97438 * 7 5 3 9 9 C 1.52991 * 109.47165 * 179.97438 * 8 7 5 10 10 H 1.09004 * 112.84945 * 43.80616 * 9 8 7 11 11 C 1.53778 * 113.61431 * 175.00294 * 9 8 7 12 12 C 1.53785 * 87.08143 * 89.11952 * 11 9 8 13 13 H 1.09002 * 113.60853 * 270.88252 * 12 11 9 14 14 N 1.46901 * 113.61541 * 140.06645 * 12 11 9 15 15 C 1.46896 * 111.00102 * 156.52508 * 14 12 11 16 16 C 1.50697 * 109.47434 * 179.97438 * 15 14 12 17 17 O 1.21297 * 119.99704 * 0.02562 * 16 15 14 18 18 N 1.34770 * 120.00140 * 179.97438 * 16 15 14 19 19 C 1.37103 * 120.00339 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99287 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00488 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99706 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00341 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46942 * 90.00282 * 23 21 19 25 25 H 1.48503 * 109.47458 * 210.00551 * 23 21 19 26 26 H 1.48507 * 109.46857 * 330.00567 * 23 21 19 27 27 C 1.53779 * 87.08288 * 25.43132 * 12 11 9 28 28 N 1.46899 * 109.47004 * 66.40448 * 3 2 1 29 29 C 1.46898 * 111.00164 * 277.90493 * 28 3 2 30 30 C 1.46899 * 111.00150 * 41.86040 * 28 3 2 31 31 H 1.08998 * 109.47123 * 279.32139 * 1 2 3 32 32 H 1.08993 * 109.47197 * 39.32776 * 1 2 3 33 33 H 1.09004 * 109.46863 * 159.32687 * 1 2 3 34 34 H 1.08996 * 109.47715 * 239.99438 * 2 1 3 35 35 H 1.09007 * 109.46725 * 119.99680 * 2 1 3 36 36 H 0.96994 * 119.99620 * 0.02562 * 7 5 3 37 37 H 1.09002 * 109.46594 * 59.99916 * 8 7 5 38 38 H 1.09001 * 109.46838 * 300.00526 * 8 7 5 39 39 H 1.08994 * 113.61533 * 334.56364 * 11 9 8 40 40 H 1.09005 * 113.69018 * 203.67613 * 11 9 8 41 41 H 1.00895 * 110.99837 * 280.48168 * 14 12 11 42 42 H 1.08997 * 109.47144 * 300.00491 * 15 14 12 43 43 H 1.09005 * 109.46993 * 59.99553 * 15 14 12 44 44 H 0.97004 * 120.00435 * 0.02562 * 18 16 15 45 45 H 0.97008 * 119.99588 * 179.97438 * 22 21 19 46 46 H 1.08997 * 113.61550 * 89.11528 * 27 12 11 47 47 H 1.08995 * 113.61479 * 220.02354 * 27 12 11 48 48 H 1.09008 * 109.47064 * 67.45164 * 29 28 3 49 49 H 1.08998 * 109.47238 * 187.44824 * 29 28 3 50 50 H 1.09001 * 109.47257 * 307.45455 * 29 28 3 51 51 H 1.09008 * 109.47321 * 52.86664 * 30 28 3 52 52 H 1.08998 * 109.47676 * 172.86596 * 30 28 3 53 53 H 1.09001 * 109.47341 * 292.87027 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5861 1.9884 -0.8271 5 6 3.5386 1.4455 -0.1585 6 8 4.2503 1.6235 0.8073 7 7 4.0882 1.2503 -1.3737 8 6 5.5450 1.2537 -1.5279 9 6 5.9031 1.0112 -2.9954 10 1 5.2836 1.5871 -3.6830 11 6 7.4092 1.1167 -3.2875 12 6 7.4973 -0.3839 -2.9628 13 1 7.6780 -0.5925 -1.9083 14 7 8.3983 -1.1270 -3.8539 15 6 8.8791 -2.3567 -3.2102 16 6 9.7979 -3.0908 -4.1525 17 8 10.0298 -2.6341 -5.2520 18 7 10.3628 -4.2541 -3.7732 19 6 11.1991 -4.9217 -4.6302 20 1 11.4056 -4.5151 -5.6092 21 6 11.7819 -6.1208 -4.2389 22 7 11.5310 -6.6153 -3.0475 23 14 12.9220 -7.0300 -5.4063 24 1 14.3177 -6.5693 -5.1941 25 1 12.8372 -8.4894 -5.1448 26 1 12.5174 -6.7541 -6.8083 27 6 6.0157 -0.4775 -3.3641 28 7 1.6806 2.0890 1.2692 29 6 0.2952 2.5763 1.2379 30 6 1.8930 1.1786 2.4024 31 1 -0.3633 0.1664 1.0141 32 1 -0.3633 0.7949 -0.6512 33 1 -0.3633 -0.9615 -0.3628 34 1 1.8935 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.5190 1.1084 -2.1461 37 1 5.9772 0.4639 -0.9134 38 1 5.9416 2.2184 -1.2112 39 1 7.9477 1.7486 -2.5814 40 1 7.6383 1.3527 -4.3267 41 1 7.9490 -1.3313 -4.7339 42 1 9.4203 -2.1022 -2.2990 43 1 8.0295 -2.9931 -2.9623 44 1 10.1776 -4.6192 -2.8937 45 1 11.9376 -7.4527 -2.7745 46 1 5.8624 -0.6774 -4.4246 47 1 5.4294 -1.1325 -2.7198 48 1 -0.3879 1.7275 1.2017 49 1 0.0966 3.1644 2.1339 50 1 0.1487 3.1985 0.3550 51 1 2.9104 0.7887 2.3695 52 1 1.7413 1.7195 3.3364 53 1 1.1850 0.3520 2.3420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316632823.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -66.323876 kcal Electronic energy + Delta-G solvation = -29360.659392 eV Core-core repulsion = 25267.113866 eV Total energy + Delta-G solvation = -4093.545527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.37887 -40.57367 -39.86273 -38.51048 -36.20337 -35.74153 -34.45686 -33.26630 -33.14110 -30.09050 -28.82714 -28.50063 -27.28884 -26.56191 -25.74512 -23.81622 -23.45900 -22.60002 -21.21112 -20.96974 -20.02237 -19.70018 -18.07970 -17.92335 -17.57616 -16.94059 -16.90055 -16.38962 -16.32353 -16.17562 -15.92507 -15.75348 -15.54753 -15.27754 -14.84029 -14.57365 -14.41841 -14.19493 -13.77577 -13.63980 -13.52066 -13.46258 -13.25885 -13.16227 -13.06235 -12.91258 -12.84852 -12.67542 -12.60933 -12.51624 -12.42948 -12.22511 -12.13395 -11.98836 -11.75064 -11.51927 -11.37351 -11.21342 -10.67142 -10.33599 -10.03925 -10.02779 -9.21706 -9.13415 -8.47504 -5.96679 1.37811 1.41485 1.54459 1.66722 2.03904 2.09980 2.28868 2.96137 3.10693 3.19624 3.49716 3.56303 3.66488 3.74482 3.83527 3.88119 3.99064 4.04395 4.29192 4.30960 4.32520 4.34731 4.40282 4.46191 4.49792 4.51148 4.61301 4.63884 4.70988 4.73244 4.80790 4.84458 4.91324 5.00088 5.03031 5.04993 5.09130 5.14226 5.15446 5.22328 5.34537 5.36704 5.40334 5.52705 5.92921 5.96637 6.11110 6.16947 6.46112 6.58954 6.62801 7.11344 7.32945 7.54903 8.09965 8.69862 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.001621 C = 0.001557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.254538 B =17271.162405 C =17977.403153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.071 3.929 4 H 0.125 0.875 5 C 0.513 3.487 6 O -0.572 6.572 7 N -0.716 5.716 8 C 0.142 3.858 9 C -0.102 4.102 10 H 0.107 0.893 11 C -0.116 4.116 12 C 0.055 3.945 13 H 0.095 0.905 14 N -0.671 5.671 15 C 0.065 3.935 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.155 4.155 28 N -0.545 5.545 29 C 0.009 3.991 30 C 0.025 3.975 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.415 0.585 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.347 0.653 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.055 0.945 52 H 0.066 0.934 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.301 15.957 7.384 32.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.189 4.189 3 C -0.041 4.041 4 H 0.143 0.857 5 C 0.300 3.700 6 O -0.450 6.450 7 N -0.369 5.369 8 C 0.018 3.982 9 C -0.121 4.121 10 H 0.125 0.875 11 C -0.155 4.155 12 C -0.055 4.055 13 H 0.113 0.887 14 N -0.303 5.303 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.194 4.194 28 N -0.269 5.269 29 C -0.138 4.138 30 C -0.123 4.123 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.251 0.749 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.090 0.910 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.074 0.926 52 H 0.085 0.915 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -25.688 16.979 7.684 31.737 hybrid contribution -0.520 -2.083 -0.314 2.170 sum -26.209 14.896 7.370 31.034 Atomic orbital electron populations 1.22036 0.93443 1.03104 1.02285 1.22137 0.98084 0.95078 1.03579 1.21801 0.90838 0.96356 0.95072 0.85726 1.21068 0.91318 0.75083 0.82559 1.90670 1.64422 1.49723 1.40184 1.45884 1.07740 1.73194 1.10092 1.21040 0.80370 1.01335 0.95422 1.22235 0.97684 0.97120 0.95063 0.87525 1.23043 0.94557 0.95227 1.02668 1.23308 0.90230 0.95260 0.96716 0.88656 1.60038 1.42556 1.21173 1.06508 1.21554 0.97249 0.91512 0.96415 1.20907 0.85169 0.82421 0.89043 1.90484 1.66684 1.68836 1.24980 1.41951 1.41932 1.19987 1.17191 1.19691 1.23771 1.04173 0.98881 0.90254 1.26066 0.99477 0.97325 0.98452 1.69681 1.45044 1.21613 1.19822 0.84905 0.78020 0.77340 0.77921 1.19701 1.19479 1.19660 1.23701 0.96820 0.96698 1.02181 1.61753 1.24733 1.38521 1.01859 1.22861 0.86918 1.00667 1.03399 1.22427 1.01116 0.95218 0.93497 0.92137 0.90882 0.91691 0.89969 0.91975 0.74861 0.92757 0.91989 0.91072 0.89325 0.83344 0.88348 0.91732 0.77024 0.91289 0.89157 0.91040 0.92428 0.91360 0.90419 0.92635 0.91479 0.93913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.20 71.98 0.59 -0.35 16 2 C -0.15 -1.46 4.87 30.60 0.15 -1.32 16 3 C 0.07 0.88 2.30 44.17 0.10 0.99 16 4 H 0.13 0.92 7.58 -2.39 -0.02 0.90 16 5 C 0.51 9.63 6.99 87.65 0.61 10.24 16 6 O -0.57 -16.33 14.74 -3.04 -0.04 -16.37 16 7 N -0.72 -9.67 5.56 -463.07 -2.57 -12.24 16 8 C 0.14 2.33 5.35 86.38 0.46 2.79 16 9 C -0.10 -1.39 3.94 -10.27 -0.04 -1.43 16 10 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 11 C -0.12 -2.18 7.47 31.12 0.23 -1.95 16 12 C 0.05 1.23 3.82 45.44 0.17 1.40 16 13 H 0.10 2.14 7.45 -2.39 -0.02 2.13 16 14 N -0.67 -20.95 6.24 -492.86 -3.07 -24.02 16 15 C 0.07 2.27 6.02 85.56 0.52 2.79 16 16 C 0.44 21.11 7.82 87.66 0.69 21.79 16 17 O -0.62 -34.91 15.78 -3.08 -0.05 -34.95 16 18 N -0.57 -29.89 5.29 -306.99 -1.62 -31.52 16 19 C -0.34 -19.30 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 21 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 22 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 23 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C -0.15 -2.56 7.24 31.12 0.23 -2.33 16 28 N -0.54 -8.30 4.64 -927.72 -4.31 -12.61 16 29 C 0.01 0.08 8.84 127.69 1.13 1.21 16 30 C 0.03 0.41 8.04 127.69 1.03 1.44 16 31 H 0.06 0.41 5.18 -2.39 -0.01 0.40 16 32 H 0.07 0.28 7.46 -2.39 -0.02 0.27 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.84 6.06 -2.38 -0.01 0.82 16 36 H 0.41 2.95 8.47 -92.71 -0.79 2.17 16 37 H 0.05 1.09 7.39 -2.39 -0.02 1.07 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 40 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.35 11.14 7.91 -89.70 -0.71 10.43 16 42 H 0.10 3.19 8.13 -2.39 -0.02 3.17 16 43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.40 19.64 7.90 -92.71 -0.73 18.90 16 45 H 0.28 14.14 8.31 -92.70 -0.77 13.37 16 46 H 0.09 1.48 7.83 -2.39 -0.02 1.46 16 47 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 48 H 0.06 0.38 4.36 -2.38 -0.01 0.36 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.08 0.53 7.88 -2.39 -0.02 0.51 16 51 H 0.05 1.21 6.33 -2.38 -0.02 1.20 16 52 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 53 H 0.04 0.55 5.50 -2.39 -0.01 0.53 16 Total: -1.00 -75.08 414.46 -3.50 -78.59 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -1.29 Total: 41.26 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.14 Total: 16.52 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -11.29 Total: -130.25 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.09 Total: -51.33 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -75.08 -3.50 -78.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316632823.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.265 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds