Wall clock time and date at job start Sat Apr 11 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 N 1.46902 * 109.47221 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99956 * 66.03930 * 4 3 2 6 6 C 1.46893 * 110.99942 * 190.00094 * 4 3 2 7 7 C 1.50697 * 109.47274 * 170.00161 * 6 4 3 8 8 O 1.21285 * 119.99770 * 359.97438 * 7 6 4 9 9 N 1.34778 * 120.00413 * 179.97438 * 7 6 4 10 10 C 1.46500 * 120.00319 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.36471 * 324.27749 * 10 9 7 12 12 C 1.54262 * 110.32117 * 86.45453 * 10 9 7 13 13 C 1.54385 * 105.14590 * 118.94932 * 12 10 9 14 14 N 1.48560 * 104.59445 * 23.80120 * 13 12 10 15 15 C 1.46903 * 110.99703 * 200.95695 * 14 13 12 16 16 C 1.50691 * 109.47328 * 290.13011 * 15 14 13 17 17 O 1.21298 * 120.00025 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99939 * 180.02562 * 16 15 14 19 19 C 1.37109 * 119.99809 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00109 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99759 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99916 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47365 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46628 * 120.00419 * 23 21 19 26 26 H 1.48493 * 109.47243 * 240.00290 * 23 21 19 27 27 C 1.48560 * 104.22462 * 320.51791 * 14 13 12 28 28 H 1.09006 * 110.40786 * 280.58928 * 27 14 13 29 29 C 1.53001 * 110.41245 * 158.26206 * 27 14 13 30 30 H 1.09005 * 109.46965 * 299.99990 * 1 2 3 31 31 H 1.08999 * 109.46990 * 60.00007 * 1 2 3 32 32 H 1.09005 * 109.47173 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47098 * 239.99362 * 2 1 3 34 34 H 1.09008 * 109.47192 * 119.99820 * 2 1 3 35 35 H 1.09002 * 109.47100 * 59.99581 * 3 2 1 36 36 H 1.08999 * 109.47103 * 299.99924 * 3 2 1 37 37 H 1.09004 * 109.47181 * 183.95205 * 5 4 3 38 38 H 1.08990 * 109.47615 * 303.95737 * 5 4 3 39 39 H 1.09007 * 109.46870 * 63.95778 * 5 4 3 40 40 H 1.08992 * 109.47632 * 49.99681 * 6 4 3 41 41 H 1.09004 * 109.46898 * 289.99811 * 6 4 3 42 42 H 0.97001 * 119.99851 * 0.02562 * 9 7 6 43 43 H 1.09002 * 110.32521 * 0.02562 * 12 10 9 44 44 H 1.08998 * 110.32511 * 237.89601 * 12 10 9 45 45 H 1.09004 * 110.40685 * 142.58460 * 13 12 10 46 46 H 1.08997 * 110.40872 * 264.90617 * 13 12 10 47 47 H 1.09001 * 109.46906 * 50.12862 * 15 14 13 48 48 H 1.08999 * 109.46462 * 170.12609 * 15 14 13 49 49 H 0.96998 * 119.99992 * 359.97438 * 18 16 15 50 50 H 0.96997 * 120.00335 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.46721 * 61.45175 * 29 27 14 52 52 H 1.08995 * 109.46973 * 181.45002 * 29 27 14 53 53 H 1.09002 * 109.46736 * 301.45515 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4425 0.0006 5 6 4.0360 0.8853 -1.2523 6 6 4.0354 2.7930 0.2388 7 6 5.5216 2.7183 0.4767 8 8 6.0866 1.6454 0.4509 9 7 6.2229 3.8436 0.7182 10 6 7.6676 3.7709 0.9501 11 1 7.9184 2.8634 1.4994 12 6 8.4283 3.8127 -0.3913 13 6 9.3081 5.0791 -0.3168 14 7 9.4819 5.3292 1.1372 15 6 9.8558 6.7272 1.3899 16 6 11.2596 6.9685 0.8982 17 8 11.8872 6.0646 0.3878 18 7 11.8182 8.1883 1.0264 19 6 13.0957 8.4077 0.5794 20 1 13.6544 7.6030 0.1250 21 6 13.6713 9.6655 0.7111 22 7 12.9916 10.6445 1.2645 23 14 15.4120 9.9642 0.1028 24 1 15.9565 8.7096 -0.4754 25 1 15.3975 11.0231 -0.9383 26 1 16.2655 10.3978 1.2380 27 6 8.1520 5.0196 1.7224 28 1 7.4664 5.8533 1.5705 29 6 8.2854 4.7047 3.2137 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 5.1234 0.8320 -1.1973 38 1 3.6305 -0.1148 -1.4042 39 1 3.7453 1.5256 -2.0853 40 1 3.5486 3.2237 1.1137 41 1 3.8378 3.4187 -0.6317 42 1 5.7710 4.7016 0.7392 43 1 7.7267 3.8878 -1.2222 44 1 9.0511 2.9250 -0.5013 45 1 10.2735 4.8996 -0.7899 46 1 8.8037 5.9208 -0.7915 47 1 9.1676 7.3882 0.8631 48 1 9.8059 6.9288 2.4600 49 1 11.3164 8.9110 1.4349 50 1 13.3935 11.5225 1.3568 51 1 8.6845 5.5751 3.7345 52 1 7.3058 4.4550 3.6213 53 1 8.9609 3.8598 3.3476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316797116.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:01 Heat of formation + Delta-G solvation = -86.014678 kcal Electronic energy + Delta-G solvation = -29823.817570 eV Core-core repulsion = 25729.418186 eV Total energy + Delta-G solvation = -4094.399384 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.35919 -40.42200 -39.33098 -38.13441 -36.00950 -35.33069 -34.06968 -33.30134 -32.42727 -32.13911 -29.39303 -28.03147 -27.81963 -26.22348 -25.86750 -24.14306 -22.54282 -21.66568 -21.49365 -21.18589 -20.72580 -19.85185 -18.12308 -17.85898 -17.48894 -16.86410 -16.56679 -16.43403 -16.42217 -16.16420 -15.87760 -15.58580 -15.55638 -15.18699 -14.89905 -14.83544 -14.43414 -14.20030 -13.90282 -13.71958 -13.63246 -13.47278 -13.11652 -12.94577 -12.87433 -12.80413 -12.70649 -12.60948 -12.46422 -12.38741 -12.37437 -12.27287 -12.12650 -12.06528 -11.93631 -11.67558 -11.47930 -11.44012 -10.73684 -10.32697 -10.04922 -9.99064 -9.38881 -9.27010 -8.46005 -5.94128 1.36383 1.41792 1.55599 1.68995 1.98753 2.07185 2.29713 2.81847 3.06726 3.20859 3.34079 3.42717 3.79749 3.84325 3.98838 4.04069 4.15272 4.15906 4.24697 4.30858 4.33914 4.36730 4.43359 4.44363 4.50287 4.54565 4.55447 4.58339 4.70576 4.71207 4.83760 4.85668 4.89627 4.90373 5.03046 5.04216 5.12823 5.14468 5.25408 5.31560 5.36800 5.42218 5.44277 5.48457 5.84276 5.94425 5.97335 6.10197 6.11568 6.62060 6.63223 7.14744 7.34501 7.58135 8.14763 8.71629 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.001665 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.055423 B =16812.152996 C =16995.303417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.057 3.943 4 N -0.546 5.546 5 C 0.021 3.979 6 C 0.040 3.960 7 C 0.512 3.488 8 O -0.564 6.564 9 N -0.710 5.710 10 C 0.159 3.841 11 H 0.081 0.919 12 C -0.123 4.123 13 C 0.042 3.958 14 N -0.503 5.503 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.617 6.617 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.059 3.941 28 H 0.083 0.917 29 C -0.134 4.134 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.029 0.971 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.415 0.585 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.061 0.939 52 H 0.080 0.920 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.942 -11.349 -0.306 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.271 5.271 5 C -0.127 4.127 6 C -0.091 4.091 7 C 0.299 3.701 8 O -0.442 6.442 9 N -0.364 5.364 10 C 0.053 3.947 11 H 0.099 0.901 12 C -0.162 4.162 13 C -0.086 4.086 14 N -0.228 5.228 15 C -0.082 4.082 16 C 0.229 3.771 17 O -0.503 6.503 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.050 4.050 28 H 0.100 0.900 29 C -0.191 4.191 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.147 0.853 41 H 0.102 0.898 42 H 0.253 0.747 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.129 0.871 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.099 0.901 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -26.492 -13.142 -0.002 29.573 hybrid contribution 0.193 1.968 -1.157 2.291 sum -26.299 -11.174 -1.159 28.598 Atomic orbital electron populations 1.21706 0.94359 1.02169 1.02250 1.21521 0.96281 0.96073 1.02033 1.22249 0.85096 0.97884 1.01753 1.61611 1.08556 1.20710 1.36206 1.22486 1.01224 1.00062 0.88908 1.22044 0.90696 0.91593 1.04732 1.21089 0.90233 0.83399 0.75414 1.90689 1.72399 1.29992 1.51123 1.45941 1.07553 1.10264 1.72661 1.21449 0.79930 0.98492 0.94847 0.90129 1.22632 0.98135 0.97315 0.98098 1.23006 0.99417 0.97054 0.89153 1.65029 1.26946 1.20490 1.10321 1.21914 0.92874 0.90314 1.03068 1.20774 0.89988 0.82599 0.83767 1.90496 1.65756 1.44292 1.49720 1.41913 1.14373 1.10445 1.54490 1.19669 0.91583 0.96852 1.38003 0.90553 1.25975 1.03574 0.94508 0.97022 1.69669 1.39290 1.02866 1.44261 0.84908 0.77348 0.78101 0.78205 1.20017 1.19575 1.19632 1.22956 0.89608 0.96439 0.95953 0.89966 1.21716 1.02485 1.02063 0.92854 0.92081 0.92353 0.92348 0.92452 0.92300 0.89494 0.93921 0.92034 0.90948 0.95203 0.85263 0.89790 0.74741 0.90039 0.92133 0.92281 0.93333 0.90727 0.87062 0.76987 0.91346 0.92007 0.90074 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.35 5.86 30.59 0.18 -1.18 16 3 C 0.06 0.61 4.96 86.30 0.43 1.04 16 4 N -0.55 -8.67 4.50 -927.07 -4.17 -12.84 16 5 C 0.02 0.37 9.01 127.69 1.15 1.52 16 6 C 0.04 0.48 5.45 85.56 0.47 0.95 16 7 C 0.51 9.83 7.55 87.66 0.66 10.49 16 8 O -0.56 -16.40 14.01 -3.05 -0.04 -16.44 16 9 N -0.71 -11.16 5.04 -437.91 -2.21 -13.37 16 10 C 0.16 3.56 2.92 45.97 0.13 3.70 16 11 H 0.08 2.20 7.36 -2.39 -0.02 2.18 16 12 C -0.12 -3.21 6.77 31.49 0.21 -3.00 16 13 C 0.04 1.32 5.80 86.45 0.50 1.82 16 14 N -0.50 -15.93 4.74 -860.77 -4.08 -20.02 16 15 C 0.05 1.66 5.24 85.55 0.45 2.11 16 16 C 0.44 20.95 7.58 87.65 0.66 21.61 16 17 O -0.62 -34.47 14.42 -3.09 -0.04 -34.52 16 18 N -0.57 -29.31 5.29 -306.99 -1.62 -30.93 16 19 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -49.25 13.05 21.66 0.28 -48.96 16 23 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 27 C 0.06 1.29 2.60 45.14 0.12 1.41 16 28 H 0.08 1.38 7.60 -2.38 -0.02 1.36 16 29 C -0.13 -2.73 9.34 71.98 0.67 -2.06 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.06 0.70 6.47 -2.39 -0.02 0.68 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.09 0.72 7.93 -2.39 -0.02 0.70 16 36 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 37 H 0.06 1.44 5.88 -2.38 -0.01 1.43 16 38 H 0.07 1.18 6.30 -2.39 -0.02 1.16 16 39 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.13 0.90 7.93 -2.39 -0.02 0.88 16 41 H 0.08 0.69 8.12 -2.38 -0.02 0.67 16 42 H 0.42 3.67 8.35 -92.71 -0.77 2.89 16 43 H 0.08 1.89 7.95 -2.39 -0.02 1.87 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 2.37 6.91 -2.38 -0.02 2.36 16 46 H 0.05 1.40 7.83 -2.39 -0.02 1.38 16 47 H 0.07 2.13 7.88 -2.39 -0.02 2.11 16 48 H 0.11 3.27 7.28 -2.39 -0.02 3.25 16 49 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 50 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 51 H 0.06 1.25 7.36 -2.39 -0.02 1.23 16 52 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.05 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -74.76 417.86 -2.83 -77.58 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: -0.60 Total: 34.58 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 7.63 Total: 19.80 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -11.80 Total: -126.12 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.09 Total: -50.96 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.76 -2.83 -77.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316797116.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.430 kcal (2) G-P(sol) polarization free energy of solvation -74.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds