Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46910 * 2 1 4 4 C 1.53005 * 109.46889 * 119.99698 * 2 1 3 5 5 H 1.09004 * 109.47002 * 306.12172 * 4 2 1 6 6 C 1.50699 * 109.46714 * 186.12898 * 4 2 1 7 7 O 1.21282 * 120.00109 * 267.54704 * 6 4 2 8 8 N 1.34781 * 120.00364 * 87.56076 * 6 4 2 9 9 C 1.46494 * 120.00002 * 179.97438 * 8 6 4 10 10 H 1.09000 * 110.63565 * 31.88923 * 9 8 6 11 11 C 1.55144 * 110.85417 * 268.67890 * 9 8 6 12 12 C 1.54905 * 101.65552 * 205.89499 * 11 9 8 13 13 N 1.47848 * 104.79638 * 37.07119 * 12 11 9 14 14 C 1.46897 * 111.00162 * 213.63945 * 13 12 11 15 15 C 1.50704 * 109.46925 * 290.84141 * 14 13 12 16 16 O 1.21291 * 119.99935 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99840 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99486 * 179.71894 * 17 15 14 19 19 H 1.07992 * 120.00100 * 0.28222 * 18 17 15 20 20 C 1.38952 * 119.99698 * 180.27281 * 18 17 15 21 21 N 1.31416 * 120.00208 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99872 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46917 * 60.00870 * 22 20 18 24 24 H 1.48501 * 109.46846 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47429 * 300.00247 * 22 20 18 26 26 C 1.47444 * 108.56534 * 335.90512 * 13 12 11 27 27 N 1.46893 * 109.47287 * 66.12689 * 4 2 1 28 28 C 1.46899 * 110.99966 * 277.06838 * 27 4 2 29 29 C 1.46900 * 110.99894 * 41.02002 * 27 4 2 30 30 H 1.09000 * 109.47385 * 281.89666 * 1 2 3 31 31 H 1.09002 * 109.46940 * 41.90355 * 1 2 3 32 32 H 1.09004 * 109.46746 * 161.89556 * 1 2 3 33 33 H 1.08994 * 109.47590 * 240.00095 * 2 1 3 34 34 H 1.08998 * 109.47310 * 60.00003 * 3 2 1 35 35 H 1.08999 * 109.46837 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47122 * 299.99582 * 3 2 1 37 37 H 0.97001 * 119.99522 * 359.97438 * 8 6 4 38 38 H 1.09002 * 110.99172 * 323.98884 * 11 9 8 39 39 H 1.09005 * 110.98901 * 87.76763 * 11 9 8 40 40 H 1.08997 * 110.37342 * 278.24150 * 12 11 9 41 41 H 1.08997 * 110.37478 * 155.89802 * 12 11 9 42 42 H 1.09003 * 109.47378 * 170.84258 * 14 13 12 43 43 H 1.08998 * 109.47339 * 50.83369 * 14 13 12 44 44 H 0.96997 * 120.00044 * 0.02562 * 17 15 14 45 45 H 0.96998 * 119.99958 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.89038 * 120.39830 * 26 13 12 47 47 H 1.08999 * 109.89028 * 241.58592 * 26 13 12 48 48 H 1.09006 * 109.47115 * 68.99063 * 28 27 4 49 49 H 1.09006 * 109.47024 * 188.98452 * 28 27 4 50 50 H 1.09001 * 109.47158 * 308.98679 * 28 27 4 51 51 H 1.09002 * 109.47337 * 53.47274 * 29 27 4 52 52 H 1.09008 * 109.47142 * 173.47145 * 29 27 4 53 53 H 1.09003 * 109.47700 * 293.47219 * 29 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5899 -0.2745 2.1359 6 6 3.5393 -0.5912 1.3275 7 8 4.2484 -1.4476 0.8431 8 7 4.0924 0.4768 1.9359 9 6 5.5499 0.6028 2.0124 10 1 6.0207 0.1526 1.1384 11 6 6.0919 -0.0366 3.3179 12 6 7.4060 0.7550 3.5319 13 7 7.0907 2.1338 3.1014 14 6 8.2627 2.7761 2.4918 15 6 9.3032 3.0319 3.5515 16 8 9.0892 2.7113 4.7015 17 7 10.4716 3.6171 3.2214 18 6 11.4158 3.8551 4.1866 19 1 11.2252 3.5695 5.2105 20 6 12.6180 4.4635 3.8472 21 7 12.8498 4.8113 2.6013 22 14 13.9048 4.7872 5.1621 23 1 14.3157 3.5007 5.7797 24 1 15.0875 5.4413 4.5468 25 1 13.3341 5.6771 6.2049 26 6 5.9629 2.0831 2.1529 27 7 1.6748 -2.1422 1.1778 28 6 0.2960 -2.3552 1.6377 29 6 1.8631 -2.6664 -0.1815 30 1 -0.3634 0.2118 1.0056 31 1 -0.3633 0.7649 -0.6864 32 1 -0.3633 -0.9768 -0.3194 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 3.5253 1.1618 2.3232 38 1 5.4013 0.1217 4.1462 39 1 6.2935 -1.0987 3.1779 40 1 8.2042 0.3388 2.9173 41 1 7.6900 0.7417 4.5842 42 1 7.9646 3.7220 2.0395 43 1 8.6781 2.1217 1.7254 44 1 10.6426 3.8739 2.3018 45 1 13.6890 5.2364 2.3645 46 1 5.1270 2.6663 2.5391 47 1 6.2749 2.4745 1.1846 48 1 -0.3982 -1.9196 0.9190 49 1 0.1036 -3.4245 1.7265 50 1 0.1594 -1.8796 2.6090 51 1 2.8792 -2.4551 -0.5149 52 1 1.6974 -3.7438 -0.1817 53 1 1.1527 -2.1894 -0.8567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316984882.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -73.307060 kcal Electronic energy + Delta-G solvation = -30571.057420 eV Core-core repulsion = 26477.209080 eV Total energy + Delta-G solvation = -4093.848340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.62651 -40.59688 -39.41482 -38.35976 -36.01279 -35.53530 -34.57922 -33.28747 -32.18050 -30.04556 -29.13351 -28.61210 -27.80246 -27.69120 -25.96484 -23.60339 -22.61836 -22.30668 -21.65946 -20.98657 -20.60771 -19.87541 -18.40637 -17.80333 -17.48649 -16.98568 -16.71604 -16.65133 -16.36843 -16.06908 -15.68375 -15.53537 -15.40897 -15.30482 -14.79501 -14.44658 -14.30978 -13.89133 -13.77541 -13.58363 -13.42105 -13.39528 -13.36624 -13.28936 -12.98885 -12.92305 -12.71835 -12.68963 -12.63359 -12.48695 -12.42122 -12.23765 -12.18703 -12.11942 -12.01345 -11.86061 -11.56212 -11.47206 -10.66622 -10.32040 -10.01833 -9.99220 -9.25415 -9.11667 -8.45205 -5.93718 1.40274 1.41716 1.52687 1.64650 2.03174 2.07707 2.29981 2.82041 3.12995 3.21358 3.34084 3.59111 3.65517 3.73901 3.77725 3.92577 4.03987 4.24355 4.26989 4.28305 4.32438 4.35260 4.37414 4.44334 4.45799 4.52630 4.57279 4.67379 4.71181 4.75904 4.79670 4.83800 4.90687 4.94862 4.95582 5.04074 5.06395 5.12385 5.13320 5.22544 5.35498 5.38995 5.41863 5.53772 5.84966 5.96421 5.98627 6.10493 6.11919 6.61094 6.62522 7.14485 7.32012 7.58245 8.14384 8.72002 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.001843 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.392653 B =15188.137799 C =15490.527115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.154 4.154 4 C 0.076 3.924 5 H 0.120 0.880 6 C 0.524 3.476 7 O -0.570 6.570 8 N -0.705 5.705 9 C 0.136 3.864 10 H 0.081 0.919 11 C -0.127 4.127 12 C 0.055 3.945 13 N -0.519 5.519 14 C 0.051 3.949 15 C 0.441 3.559 16 O -0.615 6.615 17 N -0.576 5.576 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 C 0.043 3.957 27 N -0.546 5.546 28 C 0.009 3.991 29 C 0.023 3.977 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.415 0.585 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.066 0.934 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.615 -8.241 -8.881 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.138 4.138 3 C -0.212 4.212 4 C -0.036 4.036 5 H 0.138 0.862 6 C 0.311 3.689 7 O -0.448 6.448 8 N -0.358 5.358 9 C 0.029 3.971 10 H 0.099 0.901 11 C -0.166 4.166 12 C -0.073 4.073 13 N -0.243 5.243 14 C -0.080 4.080 15 C 0.228 3.772 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.085 4.085 27 N -0.269 5.269 28 C -0.138 4.138 29 C -0.125 4.125 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.121 0.879 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.085 0.915 53 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -27.917 -8.943 -7.807 30.336 hybrid contribution 0.887 0.408 -0.865 1.305 sum -27.029 -8.534 -8.672 29.642 Atomic orbital electron populations 1.22119 0.92776 1.02294 1.03234 1.21696 0.97761 0.97255 0.97076 1.21983 1.00970 0.94704 1.03550 1.21854 0.90640 0.90116 1.00977 0.86233 1.21001 0.91220 0.80381 0.76311 1.90652 1.64601 1.41447 1.48091 1.45896 1.06352 1.24809 1.58724 1.21938 0.81399 0.96025 0.97716 0.90070 1.23010 0.96251 0.99117 0.98238 1.22846 0.96546 0.86973 1.00889 1.63215 1.05523 1.18328 1.37280 1.22024 0.90498 1.01670 0.93830 1.20784 0.83737 0.82322 0.90330 1.90482 1.79949 1.56916 1.22756 1.41928 1.14338 1.53991 1.11090 1.19611 0.96347 1.38409 0.91769 0.90360 1.26036 0.99774 0.96304 0.99294 1.69668 1.26763 1.41635 1.18138 0.84995 0.77138 0.78557 0.77680 1.19835 1.19501 1.19667 1.23140 0.94659 0.94910 0.95784 1.61759 1.25391 1.14369 1.25403 1.22854 0.87046 1.02700 1.01175 1.22480 1.01516 1.00094 0.88372 0.91029 0.91409 0.91988 0.91428 0.90449 0.93204 0.91602 0.74710 0.89767 0.91173 0.94743 0.91871 0.86699 0.91516 0.77054 0.91353 0.87914 0.90417 0.92338 0.91328 0.90563 0.92254 0.91538 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 7.58 71.98 0.55 -0.44 16 2 C -0.12 -1.26 1.99 -10.79 -0.02 -1.28 16 3 C -0.15 -1.41 8.28 71.98 0.60 -0.82 16 4 C 0.08 1.05 1.92 44.17 0.08 1.14 16 5 H 0.12 1.13 7.57 -2.39 -0.02 1.11 16 6 C 0.52 10.69 6.00 87.66 0.53 11.22 16 7 O -0.57 -16.89 14.30 -3.04 -0.04 -16.93 16 8 N -0.70 -11.71 4.00 -436.95 -1.75 -13.45 16 9 C 0.14 2.97 3.30 46.18 0.15 3.12 16 10 H 0.08 2.07 7.55 -2.39 -0.02 2.05 16 11 C -0.13 -3.27 6.77 31.98 0.22 -3.05 16 12 C 0.06 1.83 5.75 86.77 0.50 2.33 16 13 N -0.52 -16.43 4.86 -890.09 -4.33 -20.76 16 14 C 0.05 1.77 5.05 85.56 0.43 2.20 16 15 C 0.44 21.22 7.58 87.66 0.66 21.88 16 16 O -0.62 -34.35 14.61 -3.06 -0.04 -34.40 16 17 N -0.58 -29.87 5.29 -306.98 -1.62 -31.49 16 18 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 19 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 21 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 22 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 C 0.04 0.92 6.61 86.65 0.57 1.50 16 27 N -0.55 -8.87 4.72 -927.70 -4.38 -13.25 16 28 C 0.01 0.09 8.89 127.69 1.14 1.23 16 29 C 0.02 0.39 8.04 127.69 1.03 1.42 16 30 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 31 H 0.07 0.40 8.01 -2.39 -0.02 0.38 16 32 H 0.06 0.44 4.93 -2.38 -0.01 0.42 16 33 H 0.07 0.98 6.06 -2.39 -0.01 0.96 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.05 0.61 6.37 -2.39 -0.02 0.60 16 36 H 0.06 0.56 8.13 -2.39 -0.02 0.54 16 37 H 0.42 4.41 8.04 -92.71 -0.75 3.66 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.03 1.18 7.62 -2.39 -0.02 1.16 16 41 H 0.06 2.49 7.38 -2.39 -0.02 2.48 16 42 H 0.12 3.38 8.03 -2.39 -0.02 3.36 16 43 H 0.07 2.10 7.85 -2.39 -0.02 2.09 16 44 H 0.40 19.46 7.90 -92.71 -0.73 18.73 16 45 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 46 H 0.10 1.79 7.72 -2.39 -0.02 1.77 16 47 H 0.08 1.47 7.55 -2.39 -0.02 1.45 16 48 H 0.06 0.42 4.45 -2.38 -0.01 0.41 16 49 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.08 0.63 7.83 -2.39 -0.02 0.61 16 51 H 0.06 1.34 6.15 -2.39 -0.01 1.32 16 52 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 53 H 0.04 0.57 5.39 -2.39 -0.01 0.56 16 Total: -1.00 -74.48 403.02 -2.69 -77.17 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: -0.55 Total: 35.64 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 7.71 Total: 21.88 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -11.79 Total: -128.80 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.09 Total: -51.33 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.48 -2.69 -77.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984882.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.861 kcal (2) G-P(sol) polarization free energy of solvation -74.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds