Wall clock time and date at job start Sat Apr 11 2020 06:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46933 * 2 1 4 4 H 1.09003 * 109.46469 * 54.82857 * 3 2 1 5 5 C 1.50694 * 109.47144 * 174.82503 * 3 2 1 6 6 O 1.21287 * 119.99912 * 106.60678 * 5 3 2 7 7 N 1.34779 * 120.00412 * 286.60844 * 5 3 2 8 8 C 1.46495 * 120.00481 * 180.02562 * 7 5 3 9 9 C 1.52993 * 109.47555 * 173.90422 * 8 7 5 10 10 H 1.09006 * 110.42179 * 57.01344 * 9 8 7 11 11 C 1.54908 * 110.37925 * 179.32879 * 9 8 7 12 12 C 1.55139 * 101.65384 * 155.89730 * 11 9 8 13 13 C 1.54310 * 103.02067 * 324.34873 * 12 11 9 14 14 N 1.47445 * 107.23363 * 22.28679 * 13 12 11 15 15 C 1.46897 * 111.00372 * 123.25678 * 14 13 12 16 16 C 1.50705 * 109.47004 * 76.87041 * 15 14 13 17 17 O 1.21290 * 120.00345 * 0.02562 * 16 15 14 18 18 N 1.34781 * 119.99712 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99906 * 180.02562 * 18 16 15 20 20 H 1.08000 * 119.99783 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00284 * 179.72729 * 19 18 16 22 22 N 1.31416 * 119.99623 * 0.27328 * 21 19 18 23 23 Si 1.86803 * 120.00365 * 180.27456 * 21 19 18 24 24 H 1.48504 * 109.46761 * 59.99898 * 23 21 19 25 25 H 1.48497 * 109.47104 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47088 * 300.00084 * 23 21 19 27 27 N 1.46891 * 109.47172 * 294.82965 * 3 2 1 28 28 C 1.46904 * 110.99786 * 180.83480 * 27 3 2 29 29 C 1.46900 * 111.00341 * 304.78724 * 27 3 2 30 30 H 1.08992 * 109.47479 * 305.09517 * 1 2 3 31 31 H 1.09011 * 109.46909 * 65.09708 * 1 2 3 32 32 H 1.09003 * 109.46856 * 185.08999 * 1 2 3 33 33 H 1.09003 * 109.47524 * 240.00993 * 2 1 3 34 34 H 1.08991 * 109.47642 * 120.00101 * 2 1 3 35 35 H 0.97005 * 119.99643 * 359.97438 * 7 5 3 36 36 H 1.08994 * 109.47369 * 53.89973 * 8 7 5 37 37 H 1.09004 * 109.46661 * 293.90383 * 8 7 5 38 38 H 1.09008 * 110.98412 * 37.80411 * 11 9 8 39 39 H 1.09004 * 110.98932 * 273.99250 * 11 9 8 40 40 H 1.09004 * 110.70163 * 205.96294 * 12 11 9 41 41 H 1.08999 * 110.85202 * 82.80794 * 12 11 9 42 42 H 1.08996 * 109.89520 * 262.87777 * 13 12 11 43 43 H 1.09007 * 110.02333 * 141.76438 * 13 12 11 44 44 H 1.09005 * 109.47011 * 316.87689 * 15 14 13 45 45 H 1.09000 * 109.47616 * 196.87271 * 15 14 13 46 46 H 0.97000 * 120.00226 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99630 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.47410 * 67.43390 * 28 27 3 49 49 H 1.09001 * 109.47038 * 187.43531 * 28 27 3 50 50 H 1.08997 * 109.47294 * 307.43088 * 28 27 3 51 51 H 1.08998 * 109.47202 * 66.39688 * 29 27 3 52 52 H 1.08997 * 109.47796 * 186.40140 * 29 27 3 53 53 H 1.09002 * 109.46665 * 306.39922 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6029 1.9824 0.8401 5 6 3.5414 1.4446 0.1281 6 8 4.2316 1.7152 -0.8318 7 7 4.1174 1.1456 1.3094 8 6 5.5771 1.1481 1.4342 9 6 5.9643 0.9282 2.8978 10 1 5.5352 -0.0025 3.2691 11 6 7.5057 0.9103 3.0512 12 6 7.6772 1.3135 4.5394 13 6 6.5353 2.3280 4.7586 14 7 5.5157 2.0680 3.7258 15 6 4.2074 1.7936 4.3348 16 6 3.5864 3.0873 4.7952 17 8 4.1755 4.1348 4.6316 18 7 2.3759 3.0803 5.3878 19 6 1.8107 4.2572 5.8061 20 1 2.3354 5.1899 5.6605 21 6 0.5603 4.2507 6.4119 22 7 -0.0783 3.1158 6.5887 23 14 -0.2132 5.8551 6.9751 24 1 -0.3843 6.7583 5.8087 25 1 -1.5386 5.5785 7.5849 26 1 0.6682 6.5041 7.9786 27 7 1.6549 2.0981 -1.2569 28 6 2.1459 3.4819 -1.3008 29 6 2.1314 1.3334 -2.4171 30 1 -0.3634 0.5908 0.8408 31 1 -0.3633 0.4328 -0.9322 32 1 -0.3633 -1.0237 0.0912 33 1 1.8934 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.5654 0.9296 2.0772 36 1 5.9691 2.1068 1.0947 37 1 5.9952 0.3478 0.8235 38 1 7.9721 1.6425 2.3920 39 1 7.9046 -0.0875 2.8685 40 1 8.6471 1.7838 4.7019 41 1 7.5555 0.4491 5.1921 42 1 6.9168 3.3438 4.6556 43 1 6.1018 2.1937 5.7497 44 1 4.3364 1.1285 5.1886 45 1 3.5567 1.3196 3.5999 46 1 1.9046 2.2426 5.5182 47 1 -0.9514 3.1113 7.0113 48 1 3.2343 3.4797 -1.3574 49 1 1.7375 3.9847 -2.1775 50 1 1.8300 4.0083 -0.4002 51 1 1.6113 0.3764 -2.4600 52 1 1.9333 1.8959 -3.3294 53 1 3.2035 1.1603 -2.3226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317509128.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:27 Heat of formation + Delta-G solvation = -76.507933 kcal Electronic energy + Delta-G solvation = -31853.136874 eV Core-core repulsion = 27759.149733 eV Total energy + Delta-G solvation = -4093.987140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62307 -40.69904 -39.33919 -37.82926 -35.96661 -35.77272 -33.89175 -33.44661 -32.94020 -31.23760 -28.77334 -28.36406 -28.30443 -26.34719 -25.56753 -24.11205 -22.78256 -22.10749 -21.56673 -20.96694 -20.59663 -19.85345 -18.37181 -17.71789 -17.65229 -17.27952 -16.56899 -16.46934 -16.40951 -16.25321 -15.78170 -15.61613 -15.57567 -15.48561 -14.89500 -14.59238 -14.46757 -14.07908 -13.86955 -13.66738 -13.55592 -13.36154 -13.20696 -12.97669 -12.93362 -12.78809 -12.73692 -12.66695 -12.49849 -12.41532 -12.29457 -12.17074 -12.12378 -12.00997 -11.86616 -11.68453 -11.56046 -11.47540 -11.26133 -10.33209 -10.05885 -9.98094 -9.23358 -9.14417 -8.44720 -5.92441 1.39118 1.41772 1.51480 1.51934 2.04767 2.19158 2.28516 2.71788 2.91867 3.21168 3.33455 3.59402 3.70219 3.74787 3.85790 4.01297 4.04386 4.11699 4.20722 4.22986 4.28880 4.36659 4.46793 4.47741 4.56043 4.57542 4.60220 4.65069 4.67329 4.76165 4.81336 4.90144 4.94591 4.96919 4.98937 5.07398 5.08381 5.14548 5.17789 5.24402 5.35874 5.42555 5.48415 5.51736 5.85281 5.89627 5.98791 6.04135 6.13780 6.43726 6.63616 7.15457 7.16059 7.59108 8.16223 8.72082 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007241 B = 0.004350 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3865.882103 B = 6434.779373 C = 9218.092476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 C 0.061 3.939 4 H 0.097 0.903 5 C 0.487 3.513 6 O -0.570 6.570 7 N -0.715 5.715 8 C 0.139 3.861 9 C 0.060 3.940 10 H 0.084 0.916 11 C -0.110 4.110 12 C -0.130 4.130 13 C 0.052 3.948 14 N -0.525 5.525 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.616 6.616 18 N -0.572 5.572 19 C -0.331 4.331 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.916 5.916 23 Si 0.985 3.015 24 H -0.275 1.275 25 H -0.269 1.269 26 H -0.274 1.274 27 N -0.514 5.514 28 C 0.015 3.985 29 C 0.004 3.996 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.402 0.598 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.029 0.971 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.079 0.921 52 H 0.068 0.932 53 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.085 -13.533 -10.260 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C -0.051 4.051 4 H 0.115 0.885 5 C 0.273 3.727 6 O -0.451 6.451 7 N -0.369 5.369 8 C 0.015 3.985 9 C -0.048 4.048 10 H 0.102 0.898 11 C -0.148 4.148 12 C -0.168 4.168 13 C -0.076 4.076 14 N -0.250 5.250 15 C -0.075 4.075 16 C 0.227 3.773 17 O -0.501 6.501 18 N -0.211 5.211 19 C -0.461 4.461 20 H 0.092 0.908 21 C -0.207 4.207 22 N -0.557 5.557 23 Si 0.809 3.191 24 H -0.201 1.201 25 H -0.193 1.193 26 H -0.199 1.199 27 N -0.236 5.236 28 C -0.134 4.134 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.240 0.760 36 H 0.066 0.934 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.094 0.906 45 H 0.117 0.883 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.101 0.899 50 H 0.072 0.928 51 H 0.098 0.902 52 H 0.087 0.913 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.190 -12.226 -11.291 18.129 hybrid contribution -0.097 0.295 1.482 1.514 sum 7.093 -11.931 -9.809 16.997 Atomic orbital electron populations 1.21624 0.93620 1.02040 1.02335 1.21563 0.97979 0.91358 1.03453 1.22113 0.88471 0.99417 0.95132 0.88528 1.22300 0.92390 0.75375 0.82625 1.90566 1.65942 1.50089 1.38482 1.46364 1.08429 1.69619 1.12446 1.21363 0.79821 1.01499 0.95828 1.22944 0.97390 0.92527 0.91985 0.89797 1.22648 0.92250 1.03625 0.96316 1.22768 0.98452 0.98696 0.96891 1.22687 0.92400 0.99656 0.92838 1.62964 1.00989 1.39078 1.21921 1.21997 0.92271 0.93699 0.99518 1.20803 0.82448 0.91672 0.82391 1.90505 1.63823 1.35010 1.60789 1.41883 1.16716 1.09431 1.53021 1.19526 1.01507 0.87722 1.37307 0.90834 1.25894 0.96368 1.01521 0.96947 1.69644 1.15570 1.26702 1.43792 0.85108 0.77630 0.77879 0.78458 1.20070 1.19346 1.19912 1.62507 1.57124 1.02438 1.01550 1.22484 0.98727 0.89577 1.02578 1.22720 1.00469 0.98831 0.92320 0.93354 0.92176 0.91246 0.90615 0.89955 0.76007 0.93409 0.89765 0.90861 0.87410 0.89520 0.89758 0.93059 0.94135 0.90625 0.88333 0.76995 0.91330 0.95281 0.89932 0.92785 0.90219 0.91320 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.74 71.98 0.70 -1.88 16 2 C -0.11 -2.02 5.05 30.60 0.15 -1.87 16 3 C 0.06 1.55 2.23 44.17 0.10 1.65 16 4 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 5 C 0.49 13.80 6.37 87.65 0.56 14.36 16 6 O -0.57 -19.14 11.75 -3.05 -0.04 -19.17 16 7 N -0.72 -17.98 5.40 -463.08 -2.50 -20.48 16 8 C 0.14 3.31 5.37 86.38 0.46 3.77 16 9 C 0.06 1.25 2.61 45.38 0.12 1.37 16 10 H 0.08 1.41 7.81 -2.38 -0.02 1.39 16 11 C -0.11 -1.83 6.50 31.98 0.21 -1.62 16 12 C -0.13 -2.40 6.94 31.77 0.22 -2.18 16 13 C 0.05 1.51 6.07 86.64 0.53 2.04 16 14 N -0.52 -15.83 4.35 -865.19 -3.76 -19.59 16 15 C 0.06 1.83 4.97 85.56 0.43 2.25 16 16 C 0.44 20.38 7.63 87.66 0.67 21.05 16 17 O -0.62 -34.17 15.49 -3.06 -0.05 -34.22 16 18 N -0.57 -28.43 5.29 -306.98 -1.62 -30.05 16 19 C -0.33 -18.53 9.68 84.04 0.81 -17.72 16 20 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 21 C -0.01 -0.37 5.50 84.93 0.47 0.09 16 22 N -0.92 -48.10 13.05 21.66 0.28 -47.82 16 23 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 N -0.51 -13.38 4.61 -927.74 -4.27 -17.65 16 28 C 0.01 0.42 9.08 127.69 1.16 1.58 16 29 C 0.00 0.09 8.66 127.69 1.11 1.20 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.18 7.90 -2.38 -0.02 1.16 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.38 6.19 -2.39 -0.01 1.37 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.40 9.22 5.56 -92.70 -0.52 8.70 16 36 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.07 1.34 8.06 -2.38 -0.02 1.32 16 39 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.27 7.36 -2.38 -0.02 1.25 16 44 H 0.08 2.11 7.74 -2.38 -0.02 2.09 16 45 H 0.10 2.68 5.06 -2.39 -0.01 2.66 16 46 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 47 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 48 H 0.03 0.94 5.99 -2.39 -0.01 0.93 16 49 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 51 H 0.08 1.55 6.50 -2.39 -0.02 1.53 16 52 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 53 H 0.05 1.35 5.23 -2.39 -0.01 1.34 16 Total: -1.00 -71.58 409.69 -2.57 -74.15 By element: Atomic # 1 Polarization: 46.31 SS G_CDS: -0.33 Total: 45.98 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 7.69 Total: 24.09 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -11.87 Total: -135.60 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.08 Total: -53.39 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -71.58 -2.57 -74.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317509128.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.354 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds