Wall clock time and date at job start Sat Apr 11 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47408 * 2 1 4 4 C 1.52998 * 109.47216 * 120.00625 * 2 1 3 5 5 C 1.53004 * 109.47005 * 240.00224 * 2 1 3 6 6 H 1.09004 * 109.47164 * 299.63017 * 5 2 1 7 7 N 1.46503 * 109.47234 * 179.62906 * 5 2 1 8 8 C 1.34779 * 119.99723 * 84.99814 * 7 5 2 9 9 N 1.34777 * 119.99703 * 179.97438 * 8 7 5 10 10 O 1.21587 * 119.99836 * 0.02562 * 8 7 5 11 11 C 1.50701 * 109.47208 * 59.63015 * 5 2 1 12 12 O 1.21290 * 119.99901 * 83.79101 * 11 5 2 13 13 N 1.34772 * 120.00190 * 263.79204 * 11 5 2 14 14 C 1.47427 * 125.64645 * 354.28012 * 13 11 5 15 15 C 1.55128 * 104.72293 * 155.81288 * 14 13 11 16 16 C 1.55161 * 101.48566 * 37.29290 * 15 14 13 17 17 C 1.52999 * 110.87361 * 82.76742 * 16 15 14 18 18 C 1.53004 * 110.72054 * 205.96763 * 16 15 14 19 19 N 1.46504 * 109.46877 * 293.52423 * 18 16 15 20 20 C 1.36941 * 119.99606 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99984 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99712 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99943 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99568 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47221 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46864 * 120.00217 * 24 22 20 27 27 H 1.48499 * 109.46614 * 239.99932 * 24 22 20 28 28 C 1.47021 * 125.65118 * 174.57986 * 13 11 5 29 29 H 1.09000 * 109.47593 * 175.10128 * 1 2 3 30 30 H 1.09003 * 109.46991 * 55.09842 * 1 2 3 31 31 H 1.08997 * 109.47213 * 295.10215 * 1 2 3 32 32 H 1.09001 * 109.46540 * 60.00346 * 3 2 1 33 33 H 1.08995 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46986 * 300.00563 * 3 2 1 35 35 H 1.09002 * 109.47227 * 59.99597 * 4 2 1 36 36 H 1.09001 * 109.47031 * 180.02562 * 4 2 1 37 37 H 1.09009 * 109.46841 * 299.99773 * 4 2 1 38 38 H 0.96999 * 119.99782 * 265.00569 * 7 5 2 39 39 H 0.96999 * 119.99802 * 0.02562 * 9 8 7 40 40 H 0.96998 * 119.99893 * 179.97438 * 9 8 7 41 41 H 1.09006 * 110.36132 * 274.74143 * 14 13 11 42 42 H 1.08999 * 110.36958 * 37.06243 * 14 13 11 43 43 H 1.08995 * 111.19607 * 279.18584 * 15 14 13 44 44 H 1.09007 * 110.93655 * 155.28286 * 15 14 13 45 45 H 1.09001 * 109.46880 * 306.38970 * 17 16 15 46 46 H 1.08996 * 109.47532 * 66.38683 * 17 16 15 47 47 H 1.08998 * 109.46983 * 186.39390 * 17 16 15 48 48 H 1.09001 * 109.46832 * 53.51915 * 18 16 15 49 49 H 1.08999 * 109.47035 * 173.51976 * 18 16 15 50 50 H 0.96992 * 120.00179 * 359.97438 * 19 18 16 51 51 H 0.97001 * 119.99213 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.88427 * 300.44371 * 28 13 11 53 53 H 1.09000 * 109.88285 * 61.60323 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 2.0399 -0.7212 -1.2493 6 1 1.6820 -1.7508 -1.2460 7 7 3.5049 -0.7135 -1.2538 8 6 4.1859 -1.6647 -0.5844 9 7 5.5336 -1.6579 -0.5890 10 8 3.5843 -2.5293 0.0229 11 6 1.5301 -0.0161 -2.4797 12 8 2.1207 0.9506 -2.9132 13 7 0.4180 -0.4596 -3.0985 14 6 -0.3266 -1.6844 -2.7537 15 6 -1.7665 -1.4294 -3.2715 16 6 -1.4891 -0.6546 -4.5869 17 6 -1.1752 -1.6195 -5.7320 18 6 -2.6751 0.2423 -4.9472 19 7 -3.8344 -0.5903 -5.2776 20 6 -5.0196 -0.0038 -5.6332 21 1 -5.0998 1.0726 -5.6697 22 6 -6.1178 -0.7927 -5.9468 23 7 -6.0198 -2.1045 -5.9029 24 14 -7.7344 0.0075 -6.4326 25 1 -7.5833 1.4845 -6.4057 26 1 -8.1101 -0.4274 -7.8019 27 1 -8.7948 -0.3987 -5.4757 28 6 -0.2500 0.1945 -4.2331 29 1 -0.3634 -1.0239 -0.0878 30 1 -0.3633 0.5880 -0.8429 31 1 -0.3633 0.4360 0.9306 32 1 1.6767 1.9562 0.8901 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 -1.7490 1.2491 36 1 3.1300 -0.7210 1.2493 37 1 1.6766 -0.2075 2.1392 38 1 3.9848 -0.0238 -1.7386 39 1 6.0135 -0.9682 -1.0738 40 1 6.0237 -2.3422 -0.1069 41 1 0.1116 -2.5481 -3.2540 42 1 -0.3329 -1.8332 -1.6739 43 1 -2.3348 -0.8182 -2.5705 44 1 -2.2803 -2.3695 -3.4727 45 1 -0.3653 -2.2854 -5.4342 46 1 -2.0625 -2.2080 -5.9649 47 1 -0.8739 -1.0523 -6.6127 48 1 -2.9175 0.8823 -4.0988 49 1 -2.4152 0.8607 -5.8063 50 1 -3.7624 -1.5570 -5.2445 51 1 -6.7874 -2.6557 -6.1217 52 1 -0.5587 1.2012 -3.9514 53 1 0.4262 0.2373 -5.0870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324813403.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:55 Heat of formation + Delta-G solvation = -83.549057 kcal Electronic energy + Delta-G solvation = -31996.242436 eV Core-core repulsion = 27901.949970 eV Total energy + Delta-G solvation = -4094.292467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16442 -40.79057 -39.45341 -37.74250 -36.52126 -35.02918 -34.35516 -33.89843 -32.14111 -30.60514 -29.19709 -28.19814 -27.97471 -27.68720 -26.66283 -24.45016 -23.97668 -22.28316 -21.13073 -20.24018 -19.82820 -19.35364 -19.10147 -18.23531 -17.77313 -17.41840 -16.89291 -16.54717 -16.13454 -16.01998 -15.60541 -15.50687 -15.29445 -15.16780 -14.90626 -14.76913 -14.48442 -14.20034 -14.09922 -13.81777 -13.54075 -13.42049 -13.06121 -13.02003 -12.93989 -12.90692 -12.79020 -12.66676 -12.54498 -12.30851 -12.10787 -12.06601 -11.94250 -11.77270 -11.58268 -11.49841 -11.40138 -11.33950 -10.91612 -10.90073 -10.59445 -10.02758 -9.71072 -8.94644 -7.92495 -5.19342 1.30762 1.48989 1.49589 1.59011 1.61752 2.11693 2.24700 2.57973 3.20908 3.41397 3.52761 3.58767 3.62738 3.68856 3.79423 3.83698 4.03771 4.20212 4.23141 4.29535 4.32910 4.39402 4.46058 4.55953 4.67382 4.71951 4.77749 4.79119 4.87843 4.89522 4.96920 4.99436 5.01078 5.03430 5.10240 5.12450 5.18603 5.21177 5.25618 5.33655 5.34277 5.40051 5.47362 5.48955 5.53505 5.83759 6.06875 6.30473 6.39741 6.94170 7.03524 7.38301 7.65590 8.13638 8.38800 9.30994 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002453 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.711076 B =11409.645415 C =11609.032730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.136 4.136 4 C -0.117 4.117 5 C 0.165 3.835 6 H 0.103 0.897 7 N -0.723 5.723 8 C 0.705 3.295 9 N -0.848 5.848 10 O -0.623 6.623 11 C 0.532 3.468 12 O -0.562 6.562 13 N -0.604 5.604 14 C 0.095 3.905 15 C -0.111 4.111 16 C -0.070 4.070 17 C -0.125 4.125 18 C 0.169 3.831 19 N -0.736 5.736 20 C -0.240 4.240 21 H 0.072 0.928 22 C -0.072 4.072 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.128 3.872 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.410 0.590 39 H 0.412 0.588 40 H 0.423 0.577 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.054 0.946 48 H 0.020 0.980 49 H 0.018 0.982 50 H 0.379 0.621 51 H 0.251 0.749 52 H 0.065 0.935 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.996 2.234 12.838 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.194 4.194 4 C -0.175 4.175 5 C 0.055 3.945 6 H 0.121 0.879 7 N -0.381 5.381 8 C 0.404 3.596 9 N -0.418 5.418 10 O -0.504 6.504 11 C 0.320 3.680 12 O -0.441 6.441 13 N -0.337 5.337 14 C -0.027 4.027 15 C -0.150 4.150 16 C -0.071 4.071 17 C -0.183 4.183 18 C 0.042 3.958 19 N -0.380 5.380 20 C -0.372 4.372 21 H 0.090 0.910 22 C -0.264 4.264 23 N -0.617 5.617 24 Si 0.797 3.203 25 H -0.194 1.194 26 H -0.222 1.222 27 H -0.221 1.221 28 C 0.005 3.995 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.247 0.753 39 H 0.242 0.758 40 H 0.256 0.744 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.038 0.962 49 H 0.036 0.964 50 H 0.213 0.787 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.656 2.283 13.049 27.113 hybrid contribution -0.609 0.348 -0.861 1.110 sum 23.047 2.631 12.188 26.204 Atomic orbital electron populations 1.22031 0.93261 1.02611 1.02701 1.20851 0.96226 0.96135 0.93710 1.21832 1.01311 0.94389 1.01849 1.21747 1.00650 0.99671 0.95394 1.20663 0.80969 1.00918 0.91929 0.87924 1.44691 1.05322 1.31832 1.56209 1.15966 0.83018 0.81322 0.79336 1.42789 1.03947 1.36156 1.58867 1.90971 1.68951 1.40602 1.49846 1.20354 0.79378 0.84046 0.84176 1.90676 1.57609 1.28837 1.66954 1.48443 1.26307 1.25962 1.32953 1.22743 0.91065 0.86713 1.02158 1.22774 0.95423 1.01173 0.95580 1.21629 0.93275 0.95841 0.96330 1.21678 1.01248 0.98546 0.96792 1.20683 0.86019 0.92481 0.96612 1.42482 1.07735 1.05591 1.82144 1.19612 0.89420 0.91833 1.36348 0.91039 1.25453 1.01322 0.95957 1.03715 1.69795 1.30801 1.03809 1.57269 0.85155 0.80199 0.78001 0.76901 1.19370 1.22211 1.22123 1.21862 0.92844 0.96060 0.88778 0.91375 0.93367 0.90781 0.91658 0.92233 0.93509 0.92785 0.93273 0.92119 0.75343 0.75802 0.74384 0.89712 0.88484 0.90900 0.89888 0.91246 0.93387 0.92667 0.96211 0.96415 0.78747 0.94059 0.91701 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.25 71.98 0.52 -2.22 16 2 C -0.07 -1.26 0.62 -52.18 -0.03 -1.29 16 3 C -0.14 -2.54 7.90 71.98 0.57 -1.97 16 4 C -0.12 -2.21 7.00 71.98 0.50 -1.71 16 5 C 0.17 3.33 1.56 44.25 0.07 3.40 16 6 H 0.10 2.20 6.10 -2.38 -0.01 2.18 16 7 N -0.72 -12.50 4.18 -461.39 -1.93 -14.42 16 8 C 0.71 12.68 7.21 179.05 1.29 13.97 16 9 N -0.85 -7.81 8.88 -184.74 -1.64 -9.45 16 10 O -0.62 -15.81 14.30 -3.99 -0.06 -15.86 16 11 C 0.53 12.67 5.30 87.66 0.46 13.13 16 12 O -0.56 -15.92 15.15 -3.06 -0.05 -15.97 16 13 N -0.60 -14.16 2.90 -811.35 -2.35 -16.51 16 14 C 0.09 1.98 5.77 86.93 0.50 2.49 16 15 C -0.11 -2.95 5.74 32.06 0.18 -2.77 16 16 C -0.07 -2.04 0.61 -50.99 -0.03 -2.07 16 17 C -0.13 -3.63 8.28 71.98 0.60 -3.03 16 18 C 0.17 6.41 5.08 86.38 0.44 6.84 16 19 N -0.74 -35.40 5.15 -343.43 -1.77 -37.17 16 20 C -0.24 -13.06 9.99 84.03 0.84 -12.22 16 21 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 22 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 23 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 24 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 C 0.13 3.36 6.05 86.73 0.52 3.88 16 29 H 0.07 1.18 6.22 -2.39 -0.01 1.16 16 30 H 0.05 1.02 7.11 -2.39 -0.02 1.01 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.03 7.59 -2.39 -0.02 1.02 16 34 H 0.05 1.06 6.42 -2.39 -0.02 1.04 16 35 H 0.05 1.16 7.55 -2.39 -0.02 1.14 16 36 H 0.05 0.99 5.77 -2.39 -0.01 0.98 16 37 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.41 6.27 7.97 -92.71 -0.74 5.53 16 39 H 0.41 1.53 8.84 -92.71 -0.82 0.71 16 40 H 0.42 2.98 8.93 -92.71 -0.83 2.15 16 41 H 0.08 1.61 7.69 -2.38 -0.02 1.59 16 42 H 0.10 1.75 4.59 -2.39 -0.01 1.74 16 43 H 0.07 2.05 8.02 -2.39 -0.02 2.03 16 44 H 0.08 2.35 8.04 -2.38 -0.02 2.33 16 45 H 0.07 1.68 7.41 -2.39 -0.02 1.66 16 46 H 0.05 1.66 6.69 -2.39 -0.02 1.64 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.02 0.77 8.10 -2.39 -0.02 0.75 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 50 H 0.38 19.07 6.21 -92.71 -0.58 18.49 16 51 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 52 H 0.06 1.80 7.82 -2.39 -0.02 1.78 16 53 H 0.07 1.87 7.84 -2.39 -0.02 1.85 16 Total: -1.00 -69.48 400.09 -0.58 -70.06 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -2.00 Total: 36.08 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.91 Total: 12.85 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -7.41 Total: -134.77 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.10 Total: -31.83 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -69.48 -0.58 -70.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324813403.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.491 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds