Wall clock time and date at job start Sat Apr 11 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47203 * 2 1 4 4 C 1.53000 * 109.47106 * 240.00153 * 2 1 3 5 5 C 1.52999 * 109.47538 * 120.00157 * 2 1 3 6 6 H 1.09004 * 109.46867 * 298.60459 * 5 2 1 7 7 N 1.46498 * 109.47477 * 178.60633 * 5 2 1 8 8 C 1.34774 * 120.00408 * 84.99255 * 7 5 2 9 9 N 1.34771 * 120.00360 * 179.97438 * 8 7 5 10 10 O 1.21586 * 119.99870 * 0.02562 * 8 7 5 11 11 C 1.50697 * 109.47095 * 58.60162 * 5 2 1 12 12 O 1.21284 * 119.99771 * 87.50061 * 11 5 2 13 13 N 1.34777 * 120.00199 * 267.49242 * 11 5 2 14 14 C 1.47426 * 125.64725 * 354.80410 * 13 11 5 15 15 C 1.54902 * 104.83272 * 204.08666 * 14 13 11 16 16 C 1.55400 * 101.67125 * 323.07995 * 15 14 13 17 17 C 1.53001 * 110.69180 * 277.04795 * 16 15 14 18 18 C 1.52993 * 110.85973 * 153.69475 * 16 15 14 19 19 N 1.46505 * 109.47027 * 66.54024 * 18 16 15 20 20 C 1.36932 * 120.00358 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99734 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00201 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00254 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99837 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46798 * 90.00366 * 24 22 20 26 26 H 1.48499 * 109.47023 * 209.99831 * 24 22 20 27 27 H 1.48496 * 109.47176 * 330.00061 * 24 22 20 28 28 C 1.47018 * 125.64947 * 174.75680 * 13 11 5 29 29 H 1.08998 * 109.46515 * 294.95963 * 1 2 3 30 30 H 1.08992 * 109.47548 * 54.96234 * 1 2 3 31 31 H 1.09001 * 109.46817 * 174.96573 * 1 2 3 32 32 H 1.09005 * 109.47632 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47350 * 300.00467 * 3 2 1 34 34 H 1.09003 * 109.47217 * 59.99809 * 3 2 1 35 35 H 1.09005 * 109.47213 * 299.99768 * 4 2 1 36 36 H 1.08999 * 109.47251 * 59.99971 * 4 2 1 37 37 H 1.08999 * 109.47014 * 179.97438 * 4 2 1 38 38 H 0.97005 * 120.00041 * 265.00174 * 7 5 2 39 39 H 0.97005 * 120.00089 * 0.02562 * 9 8 7 40 40 H 0.97000 * 120.00589 * 180.02562 * 9 8 7 41 41 H 1.08993 * 110.37116 * 322.93134 * 14 13 11 42 42 H 1.09003 * 110.36856 * 85.25263 * 14 13 11 43 43 H 1.09000 * 111.00145 * 81.06483 * 15 14 13 44 44 H 1.08997 * 111.01080 * 204.87581 * 15 14 13 45 45 H 1.09004 * 109.47045 * 173.36560 * 17 16 15 46 46 H 1.08997 * 109.47058 * 293.36576 * 17 16 15 47 47 H 1.09000 * 109.47091 * 53.36907 * 17 16 15 48 48 H 1.08995 * 109.47541 * 186.53422 * 18 16 15 49 49 H 1.08999 * 109.47318 * 306.54301 * 18 16 15 50 50 H 0.97006 * 119.99850 * 359.97438 * 19 18 16 51 51 H 0.96991 * 120.00300 * 180.02562 * 23 22 20 52 52 H 1.08996 * 109.88808 * 298.40238 * 28 13 11 53 53 H 1.09001 * 109.88184 * 59.41184 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 1.6973 -0.1932 2.1390 7 7 3.5047 -0.7504 1.2325 8 6 4.2051 0.2977 1.7092 9 7 5.5525 0.2707 1.6943 10 8 3.6214 1.2673 2.1536 11 6 1.5097 -2.1317 1.2666 12 8 2.1189 -3.0156 0.7022 13 7 0.3586 -2.4109 1.9096 14 6 -0.4231 -1.4620 2.7232 15 6 -1.2335 -2.3505 3.6995 16 6 -1.5822 -3.5689 2.8001 17 6 -2.8161 -3.2740 1.9450 18 6 -1.7951 -4.8265 3.6450 19 7 -2.9924 -4.6615 4.4730 20 6 -3.3841 -5.6653 5.3180 21 1 -2.8107 -6.5788 5.3737 22 6 -4.5183 -5.5087 6.1030 23 7 -5.2168 -4.3953 6.0355 24 14 -5.0530 -6.8785 7.2552 25 1 -4.4120 -6.6883 8.5812 26 1 -6.5296 -6.8467 7.4102 27 1 -4.6426 -8.1890 6.6903 28 6 -0.3261 -3.7119 1.9150 29 1 -0.3632 0.4337 0.9317 30 1 -0.3634 0.5899 -0.8413 31 1 -0.3633 -1.0237 -0.0902 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 3.9704 -1.5241 0.8782 39 1 6.0182 -0.5031 1.3401 40 1 6.0566 1.0248 2.0378 41 1 0.2419 -0.7991 3.2765 42 1 -1.0957 -0.8835 2.0897 43 1 -0.6220 -2.6565 4.5484 44 1 -2.1362 -1.8400 4.0350 45 1 -2.9733 -4.0905 1.2401 46 1 -3.6899 -3.1770 2.5893 47 1 -2.6643 -2.3445 1.3963 48 1 -1.9230 -5.6876 2.9890 49 1 -0.9284 -4.9841 4.2868 50 1 -3.5072 -3.8409 4.4233 51 1 -6.0090 -4.2857 6.5843 52 1 -0.6167 -3.9822 0.8998 53 1 0.3329 -4.4759 2.3275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324813404.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:58 Heat of formation + Delta-G solvation = -83.752923 kcal Electronic energy + Delta-G solvation = -31965.487955 eV Core-core repulsion = 27871.186648 eV Total energy + Delta-G solvation = -4094.301307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16268 -40.79090 -39.44020 -37.74527 -36.52978 -35.03141 -34.35367 -33.89581 -32.14856 -30.61543 -29.20950 -28.19149 -27.90489 -27.72349 -26.66839 -24.44364 -23.96596 -22.28390 -21.14922 -20.24650 -19.81015 -19.35603 -19.10960 -18.15947 -17.82955 -17.49185 -16.76067 -16.60139 -16.38002 -15.88178 -15.67085 -15.34779 -15.30018 -15.12308 -14.82683 -14.72920 -14.65476 -14.13834 -14.05820 -13.91068 -13.55815 -13.42072 -13.04922 -13.01517 -12.90716 -12.84030 -12.81500 -12.62787 -12.53865 -12.29085 -12.13938 -12.08779 -11.91383 -11.71812 -11.62737 -11.49556 -11.40574 -11.34435 -10.91441 -10.90648 -10.60177 -10.02398 -9.71520 -8.95522 -7.92998 -5.19996 1.32741 1.48848 1.49397 1.57747 1.61509 2.11595 2.23130 2.57477 3.20129 3.40562 3.52478 3.57706 3.64066 3.69686 3.78291 3.86218 4.06070 4.19479 4.21587 4.30425 4.34147 4.38772 4.48727 4.61234 4.68607 4.74569 4.79178 4.80016 4.88586 4.89742 4.96151 5.00340 5.02130 5.05184 5.09583 5.13433 5.20008 5.20546 5.25069 5.33051 5.34600 5.43107 5.48727 5.50502 5.52583 5.83008 6.05929 6.29826 6.39635 6.94240 7.02829 7.37651 7.64696 8.12848 8.38465 9.30258 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.020666 B = 0.002444 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.586250 B =11454.779361 C =11743.158664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.066 4.066 3 C -0.118 4.118 4 C -0.136 4.136 5 C 0.164 3.836 6 H 0.102 0.898 7 N -0.724 5.724 8 C 0.705 3.295 9 N -0.849 5.849 10 O -0.623 6.623 11 C 0.532 3.468 12 O -0.564 6.564 13 N -0.603 5.603 14 C 0.097 3.903 15 C -0.115 4.115 16 C -0.069 4.069 17 C -0.125 4.125 18 C 0.168 3.832 19 N -0.735 5.735 20 C -0.243 4.243 21 H 0.071 0.929 22 C -0.071 4.071 23 N -0.965 5.965 24 Si 0.968 3.032 25 H -0.289 1.289 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.127 3.873 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.410 0.590 39 H 0.411 0.589 40 H 0.423 0.577 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.019 0.981 49 H 0.015 0.985 50 H 0.379 0.621 51 H 0.251 0.749 52 H 0.075 0.925 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.243 12.095 -15.225 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 C -0.175 4.175 4 C -0.193 4.193 5 C 0.054 3.946 6 H 0.120 0.880 7 N -0.382 5.382 8 C 0.403 3.597 9 N -0.418 5.418 10 O -0.504 6.504 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.336 5.336 14 C -0.025 4.025 15 C -0.153 4.153 16 C -0.069 4.069 17 C -0.182 4.182 18 C 0.041 3.959 19 N -0.379 5.379 20 C -0.375 4.375 21 H 0.089 0.911 22 C -0.263 4.263 23 N -0.616 5.616 24 Si 0.798 3.202 25 H -0.216 1.216 26 H -0.222 1.222 27 H -0.198 1.198 28 C 0.004 3.996 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.246 0.754 39 H 0.242 0.758 40 H 0.256 0.744 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.074 0.926 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.037 0.963 49 H 0.033 0.967 50 H 0.213 0.787 51 H 0.060 0.940 52 H 0.094 0.906 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.042 12.186 -15.152 27.216 hybrid contribution -0.073 -1.155 0.822 1.419 sum 18.969 11.031 -14.330 26.209 Atomic orbital electron populations 1.22082 0.92930 1.02204 1.03545 1.20851 0.96595 0.96081 0.93296 1.21750 1.00607 0.93577 1.01597 1.21823 1.01225 0.99656 0.96625 1.20699 0.80768 0.91777 1.01351 0.87996 1.44712 1.05369 1.20698 1.67378 1.15968 0.82943 0.82521 0.78245 1.42795 1.03992 1.25461 1.69564 1.90968 1.70013 1.34962 1.54450 1.20354 0.79481 0.90518 0.77614 1.90674 1.58113 1.49114 1.46419 1.48438 1.22867 1.13011 1.49269 1.22725 0.94775 0.92055 0.92905 1.22802 1.00389 0.95204 0.96915 1.21661 0.94689 0.95508 0.95088 1.21682 0.95900 1.01859 0.98777 1.20676 0.88789 0.94787 0.91602 1.42466 1.29011 1.18744 1.47701 1.19576 1.06539 0.96584 1.14827 0.91141 1.25454 0.98648 0.99709 1.02534 1.69780 1.19691 1.27279 1.44846 0.85220 0.76712 0.79268 0.79032 1.21606 1.22171 1.19769 1.21862 0.92453 0.85236 1.00043 0.91219 0.90617 0.92921 0.93474 0.91973 0.92880 0.93541 0.91424 0.92480 0.75358 0.75825 0.74398 0.89296 0.88431 0.91751 0.89608 0.92585 0.93427 0.90704 0.96292 0.96662 0.78689 0.94004 0.90627 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 6.79 71.98 0.49 -1.89 16 2 C -0.07 -1.16 0.62 -52.18 -0.03 -1.20 16 3 C -0.12 -2.14 7.01 71.98 0.50 -1.63 16 4 C -0.14 -2.35 7.95 71.98 0.57 -1.78 16 5 C 0.16 3.29 1.64 44.24 0.07 3.37 16 6 H 0.10 2.21 5.87 -2.39 -0.01 2.20 16 7 N -0.72 -12.96 4.15 -461.43 -1.91 -14.87 16 8 C 0.71 13.18 7.25 179.06 1.30 14.48 16 9 N -0.85 -8.52 8.88 -184.76 -1.64 -10.16 16 10 O -0.62 -16.17 14.30 -3.99 -0.06 -16.23 16 11 C 0.53 12.68 5.33 87.66 0.47 13.15 16 12 O -0.56 -16.13 15.34 -3.04 -0.05 -16.18 16 13 N -0.60 -14.08 2.74 -811.82 -2.22 -16.30 16 14 C 0.10 2.00 5.23 86.85 0.45 2.46 16 15 C -0.11 -3.10 5.74 32.07 0.18 -2.92 16 16 C -0.07 -2.00 0.62 -50.91 -0.03 -2.03 16 17 C -0.12 -3.49 8.28 71.98 0.60 -2.90 16 18 C 0.17 6.47 5.09 86.38 0.44 6.91 16 19 N -0.74 -35.66 5.16 -343.46 -1.77 -37.43 16 20 C -0.24 -13.34 9.99 84.03 0.84 -12.50 16 21 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 23 N -0.97 -57.52 13.06 21.65 0.28 -57.23 16 24 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 28 C 0.13 3.34 6.04 86.73 0.52 3.86 16 29 H 0.07 1.02 6.52 -2.39 -0.02 1.01 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 0.93 6.83 -2.39 -0.02 0.92 16 32 H 0.05 0.94 5.74 -2.38 -0.01 0.93 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 1.10 7.62 -2.39 -0.02 1.09 16 35 H 0.05 0.97 6.58 -2.38 -0.02 0.96 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.95 7.57 -2.39 -0.02 0.93 16 38 H 0.41 6.60 7.90 -92.70 -0.73 5.86 16 39 H 0.41 1.89 8.84 -92.70 -0.82 1.07 16 40 H 0.42 3.31 8.93 -92.71 -0.83 2.48 16 41 H 0.09 1.66 6.87 -2.39 -0.02 1.64 16 42 H 0.10 1.67 5.65 -2.39 -0.01 1.66 16 43 H 0.06 1.92 8.02 -2.39 -0.02 1.90 16 44 H 0.09 2.43 8.04 -2.39 -0.02 2.41 16 45 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 46 H 0.05 1.61 6.69 -2.39 -0.02 1.59 16 47 H 0.07 1.67 7.43 -2.39 -0.02 1.65 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.02 0.61 8.11 -2.39 -0.02 0.59 16 50 H 0.38 19.14 6.22 -92.70 -0.58 18.57 16 51 H 0.25 14.56 8.31 -92.72 -0.77 13.79 16 52 H 0.08 1.91 7.84 -2.39 -0.02 1.89 16 53 H 0.06 1.72 7.82 -2.39 -0.02 1.70 16 Total: -1.00 -70.18 399.51 -0.50 -70.68 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -2.00 Total: 36.13 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.84 Total: 13.85 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -7.27 Total: -136.00 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.10 Total: -32.40 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -70.18 -0.50 -70.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324813404.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.076 kcal (2) G-P(sol) polarization free energy of solvation -70.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds