Wall clock time and date at job start Sat Apr 11 2020 06:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00350 * 2 1 4 4 H 1.48494 * 109.47139 * 269.99739 * 3 2 1 5 5 H 1.48504 * 109.46721 * 29.99709 * 3 2 1 6 6 H 1.48493 * 109.47399 * 149.99489 * 3 2 1 7 7 C 1.37879 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99962 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99935 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46784 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.46769 * 304.99805 * 11 10 9 13 13 N 1.46896 * 109.47268 * 64.99699 * 11 10 9 14 14 C 1.50702 * 109.46887 * 184.99874 * 11 10 9 15 15 O 1.21278 * 120.00171 * 259.99265 * 14 11 10 16 16 N 1.34774 * 119.99777 * 79.99940 * 14 11 10 17 17 C 1.46926 * 120.63412 * 5.92461 * 16 14 11 18 18 C 1.53190 * 108.77744 * 126.36741 * 17 16 14 19 19 C 1.53046 * 109.31141 * 54.63701 * 18 17 16 20 20 C 1.53075 * 109.65634 * 298.70142 * 19 18 17 21 21 C 1.46922 * 120.62887 * 185.90235 * 16 14 11 22 22 H 1.09000 * 109.59272 * 113.70321 * 21 16 14 23 23 C 1.53005 * 109.58708 * 353.41532 * 21 16 14 24 24 N 1.46497 * 109.46723 * 69.60481 * 23 21 16 25 25 C 1.34781 * 120.00015 * 174.70270 * 24 23 21 26 26 O 1.21278 * 119.99584 * 359.97438 * 25 24 23 27 27 C 1.50697 * 120.00227 * 179.97438 * 25 24 23 28 28 C 1.52991 * 109.47305 * 179.97438 * 27 25 24 29 29 N 1.46905 * 109.47393 * 179.97438 * 28 27 25 30 30 H 0.97006 * 119.99661 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46803 * 60.00721 * 9 7 2 32 32 H 1.08996 * 109.47009 * 300.00242 * 9 7 2 33 33 H 1.08994 * 109.47285 * 60.00498 * 10 9 7 34 34 H 1.08996 * 109.47122 * 299.99655 * 10 9 7 35 35 H 1.00897 * 111.00490 * 296.04705 * 13 11 10 36 36 H 1.00901 * 110.99977 * 60.00266 * 13 11 10 37 37 H 1.08998 * 109.58855 * 246.15561 * 17 16 14 38 38 H 1.08998 * 109.58768 * 6.58259 * 17 16 14 39 39 H 1.09001 * 109.50037 * 174.58382 * 18 17 16 40 40 H 1.09005 * 109.50291 * 294.65375 * 18 17 16 41 41 H 1.08996 * 109.45911 * 58.65434 * 19 18 17 42 42 H 1.09002 * 109.45955 * 178.62840 * 19 18 17 43 43 H 1.09002 * 109.38805 * 301.27351 * 20 19 18 44 44 H 1.09005 * 109.62179 * 181.17050 * 20 19 18 45 45 H 1.09000 * 109.46975 * 189.59981 * 23 21 16 46 46 H 1.08996 * 109.46993 * 309.59975 * 23 21 16 47 47 H 0.97001 * 120.00435 * 354.69206 * 24 23 21 48 48 H 1.09008 * 109.47132 * 299.99605 * 27 25 24 49 49 H 1.09003 * 109.47353 * 59.99411 * 27 25 24 50 50 H 1.08998 * 109.47646 * 300.00105 * 28 27 25 51 51 H 1.09004 * 109.47396 * 60.00008 * 28 27 25 52 52 H 1.00901 * 110.99999 * 180.02562 * 29 28 27 53 53 H 1.00901 * 110.99877 * 303.95604 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6367 0.0022 12 1 5.9154 -2.0470 -0.8391 13 7 6.0401 -2.0518 1.2580 14 6 6.0538 -4.0521 -0.1217 15 8 6.4272 -4.6516 0.8642 16 7 6.0882 -4.6517 -1.3282 17 6 5.7631 -3.8994 -2.5477 18 6 6.9156 -4.0546 -3.5449 19 6 7.1862 -5.5429 -3.7779 20 6 7.5957 -6.2044 -2.4596 21 6 6.4521 -6.0700 -1.4492 22 1 5.5901 -6.6403 -1.7952 23 6 6.9056 -6.6011 -0.0878 24 7 5.7550 -6.6732 0.8161 25 6 5.8942 -7.2148 2.0424 26 8 6.9720 -7.6428 2.3974 27 6 4.7108 -7.2884 2.9725 28 6 5.1362 -7.9425 4.2884 29 7 3.9827 -8.0137 5.1953 30 1 -0.4850 0.8401 -0.0004 31 1 3.8744 -0.6802 0.8912 32 1 3.8752 -0.6805 -0.8888 33 1 3.6585 -3.1503 -0.8892 34 1 3.6578 -3.1507 0.8907 35 1 5.7707 -1.0825 1.3344 36 1 5.7160 -2.5810 2.0536 37 1 4.8455 -4.2922 -2.9856 38 1 5.6315 -2.8455 -2.3026 39 1 6.6458 -3.5818 -4.4892 40 1 7.8109 -3.5802 -3.1431 41 1 6.2830 -6.0212 -4.1566 42 1 7.9897 -5.6562 -4.5057 43 1 8.4861 -5.7118 -2.0689 44 1 7.8084 -7.2598 -2.6302 45 1 7.3342 -7.5958 -0.2103 46 1 7.6560 -5.9312 0.3319 47 1 4.8929 -6.3310 0.5321 48 1 4.3403 -6.2823 3.1695 49 1 3.9219 -7.8819 2.5104 50 1 5.5064 -8.9485 4.0912 51 1 5.9252 -7.3492 4.7507 52 1 4.2383 -8.4419 6.0725 53 1 3.5817 -7.0996 5.3428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326312786.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:21 Heat of formation + Delta-G solvation = -83.910573 kcal Electronic energy + Delta-G solvation = -31855.459278 eV Core-core repulsion = 27761.151135 eV Total energy + Delta-G solvation = -4094.308143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97539 -40.37645 -38.59511 -37.33526 -36.10811 -35.57177 -34.73809 -33.79465 -32.68029 -32.05100 -30.55674 -28.61421 -27.58165 -25.83462 -25.12295 -23.70515 -22.98441 -22.13179 -21.49320 -21.18616 -20.00578 -18.98819 -18.52107 -17.80169 -17.28480 -17.15866 -16.92457 -16.43225 -16.23776 -15.96768 -15.89129 -15.69129 -15.41729 -15.31340 -15.02542 -14.70080 -14.63099 -14.54353 -14.31325 -14.07330 -13.89202 -13.70386 -13.54376 -13.45149 -13.17879 -12.98053 -12.79560 -12.66074 -12.27538 -12.17218 -11.99466 -11.87516 -11.83216 -11.67858 -11.59111 -11.48024 -11.37522 -10.86032 -10.76057 -10.16365 -9.95553 -9.72039 -9.56766 -9.36304 -8.28599 -6.33264 1.37475 1.40188 1.50149 1.60008 1.82267 1.92689 2.34230 2.36291 3.07442 3.39468 3.59170 3.72146 3.78459 3.84773 3.90559 3.96581 4.03012 4.09214 4.14248 4.17896 4.23811 4.25267 4.29765 4.49131 4.56328 4.61628 4.68091 4.69174 4.80229 4.84879 4.87733 4.96304 4.96818 4.98174 5.04353 5.08062 5.20584 5.23964 5.38742 5.47579 5.47879 5.57029 5.64037 5.66474 6.07466 6.10439 6.26542 6.41993 6.47652 6.50835 6.61435 6.75323 7.26398 7.31722 7.35202 8.87886 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007982 B = 0.003896 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3506.889828 B = 7186.020980 C = 9809.142047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.948 3.052 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.242 1.242 7 C -0.529 4.529 8 H 0.030 0.970 9 C -0.006 4.006 10 C -0.112 4.112 11 C 0.078 3.922 12 H 0.109 0.891 13 N -0.831 5.831 14 C 0.515 3.485 15 O -0.534 6.534 16 N -0.607 5.607 17 C 0.098 3.902 18 C -0.132 4.132 19 C -0.114 4.114 20 C -0.122 4.122 21 C 0.139 3.861 22 H 0.093 0.907 23 C 0.137 3.863 24 N -0.686 5.686 25 C 0.515 3.485 26 O -0.597 6.597 27 C -0.132 4.132 28 C 0.085 3.915 29 N -0.852 5.852 30 H 0.265 0.735 31 H 0.020 0.980 32 H 0.026 0.974 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.351 0.649 36 H 0.343 0.657 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.399 0.601 48 H 0.094 0.906 49 H 0.111 0.889 50 H 0.068 0.932 51 H 0.019 0.981 52 H 0.353 0.647 53 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.228 -12.189 -5.825 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.771 3.229 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.165 1.165 7 C -0.567 4.567 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.152 4.152 11 C -0.037 4.037 12 H 0.126 0.874 13 N -0.362 5.362 14 C 0.303 3.697 15 O -0.411 6.411 16 N -0.342 5.342 17 C -0.024 4.024 18 C -0.170 4.170 19 C -0.151 4.151 20 C -0.161 4.161 21 C 0.036 3.964 22 H 0.110 0.890 23 C 0.013 3.987 24 N -0.335 5.335 25 C 0.302 3.698 26 O -0.480 6.480 27 C -0.172 4.172 28 C -0.046 4.046 29 N -0.384 5.384 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.234 0.766 48 H 0.112 0.888 49 H 0.129 0.871 50 H 0.087 0.913 51 H 0.037 0.963 52 H 0.167 0.833 53 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 15.469 -13.321 -5.906 21.251 hybrid contribution -1.148 1.911 0.896 2.403 sum 14.321 -11.411 -5.009 18.984 Atomic orbital electron populations 1.70072 1.08428 1.28096 1.52602 1.25995 0.95506 1.03462 0.94155 0.85698 0.79645 0.78280 0.79263 1.19006 1.21768 1.16488 1.21407 0.92031 0.92888 1.50368 0.95140 1.19489 0.93909 0.94083 0.96838 1.21957 0.93212 0.98418 1.01645 1.21508 0.93513 0.93217 0.95489 0.87375 1.58754 1.66631 1.07425 1.03430 1.20641 0.77734 0.88366 0.82993 1.90811 1.47273 1.64518 1.38495 1.48102 1.68645 1.10874 1.06541 1.22038 0.98913 0.97106 0.84355 1.21917 0.97912 0.97662 0.99498 1.21496 1.02669 0.94689 0.96253 1.21880 0.96583 1.02661 0.94968 1.21581 0.99094 0.81022 0.94734 0.88967 1.21373 0.89819 0.99562 0.87937 1.45753 1.13025 1.59670 1.15034 1.20758 0.89941 0.76490 0.82575 1.90623 1.30120 1.51028 1.76193 1.21540 0.96535 1.03729 0.95412 1.21293 0.91253 1.00162 0.91909 1.58715 1.31887 1.28882 1.18873 0.92613 0.96142 0.95584 0.91604 0.93702 0.83437 0.84365 0.90008 0.89524 0.88847 0.92204 0.90666 0.90139 0.92313 0.88942 0.92078 0.92174 0.76619 0.88751 0.87129 0.91318 0.96261 0.83326 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.47 13.96 21.45 0.30 -57.17 16 2 C 0.01 0.32 5.47 84.66 0.46 0.78 16 3 Si 0.95 41.39 27.47 68.60 1.88 43.28 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 7 C -0.53 -28.24 9.66 25.60 0.25 -27.99 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.79 16 9 C -0.01 -0.23 3.81 29.85 0.11 -0.12 16 10 C -0.11 -3.73 4.71 30.60 0.14 -3.59 16 11 C 0.08 2.15 2.38 44.17 0.11 2.26 16 12 H 0.11 2.73 6.28 -2.39 -0.01 2.72 16 13 N -0.83 -24.18 8.94 -171.80 -1.54 -25.71 16 14 C 0.51 13.74 6.33 87.66 0.55 14.29 16 15 O -0.53 -16.86 10.06 -3.02 -0.03 -16.89 16 16 N -0.61 -12.33 2.97 -795.04 -2.36 -14.69 16 17 C 0.10 1.62 5.80 86.36 0.50 2.12 16 18 C -0.13 -1.64 6.08 30.67 0.19 -1.46 16 19 C -0.11 -1.20 5.88 30.63 0.18 -1.02 16 20 C -0.12 -1.65 5.37 30.68 0.16 -1.49 16 21 C 0.14 2.46 2.92 44.98 0.13 2.59 16 22 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 23 C 0.14 3.32 4.29 86.38 0.37 3.69 16 24 N -0.69 -17.46 3.21 -463.06 -1.49 -18.95 16 25 C 0.52 15.05 7.55 87.66 0.66 15.71 16 26 O -0.60 -21.96 15.98 -3.02 -0.05 -22.01 16 27 C -0.13 -3.08 5.96 29.84 0.18 -2.90 16 28 C 0.09 1.99 6.07 86.30 0.52 2.52 16 29 N -0.85 -16.16 9.62 -186.72 -1.80 -17.95 16 30 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.02 0.82 5.93 -2.39 -0.01 0.81 16 32 H 0.03 1.00 7.57 -2.39 -0.02 0.99 16 33 H 0.07 2.12 7.65 -2.39 -0.02 2.11 16 34 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.35 9.91 7.55 -89.70 -0.68 9.23 16 36 H 0.34 10.46 8.58 -89.69 -0.77 9.69 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.56 5.44 -2.39 -0.01 1.55 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 46 H 0.06 1.89 6.29 -2.39 -0.02 1.88 16 47 H 0.40 9.32 7.87 -92.71 -0.73 8.59 16 48 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 49 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 51 H 0.02 0.50 8.10 -2.38 -0.02 0.48 16 52 H 0.35 5.45 9.08 -89.69 -0.81 4.64 16 53 H 0.35 5.95 8.99 -89.69 -0.81 5.15 16 Total: -1.00 -72.12 406.65 -3.45 -75.57 By element: Atomic # 1 Polarization: 52.03 SS G_CDS: -2.89 Total: 49.14 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 4.53 Total: 5.39 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -6.89 Total: -134.48 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.08 Total: -38.90 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.88 Total: 43.28 kcal Total: -72.12 -3.45 -75.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326312786.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.343 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds