Wall clock time and date at job start Sat Apr 11 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47112 * 2 1 4 4 H 1.09000 * 109.46808 * 56.57711 * 3 2 1 5 5 C 1.50706 * 109.47041 * 176.57442 * 3 2 1 6 6 O 1.21276 * 119.99956 * 100.16792 * 5 3 2 7 7 N 1.34782 * 119.99872 * 280.16938 * 5 3 2 8 8 C 1.46493 * 119.99878 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47202 * 174.87120 * 8 7 5 10 10 N 1.46892 * 112.84949 * 311.16342 * 9 8 7 11 11 C 1.46906 * 110.99923 * 291.40115 * 10 9 8 12 12 C 1.50696 * 109.46927 * 174.75830 * 11 10 9 13 13 O 1.21297 * 120.00422 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00104 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00109 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00242 * 359.97438 * 15 14 12 17 17 C 1.38953 * 119.99726 * 180.02562 * 15 14 12 18 18 N 1.31407 * 119.99714 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00152 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46643 * 90.00208 * 19 17 15 21 21 H 1.48497 * 109.47253 * 210.00235 * 19 17 15 22 22 H 1.48498 * 109.46891 * 330.00538 * 19 17 15 23 23 C 1.53782 * 113.68865 * 82.43263 * 9 8 7 24 24 C 1.53784 * 87.08415 * 89.12805 * 23 9 8 25 25 C 1.53780 * 113.61364 * 179.97438 * 9 8 7 26 26 N 1.46894 * 109.47226 * 296.57725 * 3 2 1 27 27 C 1.46904 * 110.99971 * 184.07296 * 26 3 2 28 28 C 1.46911 * 110.99965 * 308.02323 * 26 3 2 29 29 H 1.09005 * 109.46811 * 65.17742 * 1 2 3 30 30 H 1.09000 * 109.47231 * 185.17636 * 1 2 3 31 31 H 1.09001 * 109.47060 * 305.18080 * 1 2 3 32 32 H 1.09003 * 109.47475 * 240.00328 * 2 1 3 33 33 H 1.08997 * 109.47337 * 119.99829 * 2 1 3 34 34 H 0.96999 * 120.00214 * 359.97438 * 7 5 3 35 35 H 1.08996 * 109.47313 * 54.86839 * 8 7 5 36 36 H 1.09003 * 109.46962 * 294.87344 * 8 7 5 37 37 H 1.00901 * 111.00262 * 167.45072 * 10 9 8 38 38 H 1.08998 * 109.47106 * 294.76139 * 11 10 9 39 39 H 1.09004 * 109.46706 * 54.76045 * 11 10 9 40 40 H 0.96999 * 119.99679 * 359.97438 * 14 12 11 41 41 H 0.97008 * 119.99739 * 179.97438 * 18 17 15 42 42 H 1.09003 * 113.61044 * 203.67373 * 23 9 8 43 43 H 1.08997 * 113.61896 * 334.57621 * 23 9 8 44 44 H 1.08998 * 113.61097 * 270.88487 * 24 23 9 45 45 H 1.08994 * 113.61420 * 139.98026 * 24 23 9 46 46 H 1.08999 * 113.61561 * 25.35036 * 25 9 8 47 47 H 1.08996 * 113.61480 * 156.25288 * 25 9 8 48 48 H 1.08997 * 109.46946 * 66.24797 * 27 26 3 49 49 H 1.09004 * 109.47078 * 186.24739 * 27 26 3 50 50 H 1.08997 * 109.47090 * 306.24479 * 27 26 3 51 51 H 1.09000 * 109.46858 * 66.20604 * 28 26 3 52 52 H 1.09000 * 109.46883 * 186.21005 * 28 26 3 53 53 H 1.08999 * 109.46868 * 306.21056 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6274 1.9737 0.8577 5 6 3.5447 1.4434 0.0849 6 8 4.2084 1.6085 -0.9166 7 7 4.1526 1.2606 1.2738 8 6 5.6152 1.2619 1.3565 9 6 6.0434 1.1640 2.8220 10 7 5.3427 2.1231 3.6863 11 6 5.7580 3.5006 3.3890 12 6 4.9285 4.4616 4.2010 13 8 4.0757 4.0405 4.9538 14 7 5.1343 5.7890 4.0909 15 6 4.3800 6.6633 4.8301 16 1 3.6207 6.2883 5.5003 17 6 4.5918 8.0318 4.7161 18 7 3.8692 8.8697 5.4250 19 14 5.9048 8.6804 3.5563 20 1 5.3100 8.9121 2.2154 21 1 6.4454 9.9582 4.0855 22 1 7.0024 7.6864 3.4459 23 6 6.0449 -0.2727 3.3706 24 6 7.5001 -0.3733 2.8836 25 6 7.5685 1.1572 3.0191 26 7 1.6190 2.1107 -1.2386 27 6 2.1726 3.4692 -1.3182 28 6 1.9949 1.3192 -2.4178 29 1 -0.3633 0.4315 -0.9328 30 1 -0.3634 -1.0235 0.0927 31 1 -0.3633 0.5921 0.8400 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.6218 1.1289 2.0749 35 1 6.0026 2.1852 0.9257 36 1 6.0111 0.4094 0.8045 37 1 5.4870 1.9044 4.6607 38 1 6.8107 3.6254 3.6423 39 1 5.6131 3.7026 2.3277 40 1 5.8165 6.1257 3.4892 41 1 4.0174 9.8252 5.3457 42 1 5.9425 -0.3262 4.4545 43 1 5.3618 -0.9410 2.8464 44 1 7.5933 -0.7252 1.8562 45 1 8.1561 -0.9026 3.5746 46 1 8.1153 1.6432 2.2111 47 1 7.8826 1.4944 4.0069 48 1 3.2571 3.4146 -1.4124 49 1 1.7577 3.9802 -2.1870 50 1 1.9136 4.0206 -0.4144 51 1 1.4305 0.3867 -2.4243 52 1 1.7715 1.8856 -3.3218 53 1 3.0616 1.0979 -2.3819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326912853.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:29 Heat of formation + Delta-G solvation = -61.260495 kcal Electronic energy + Delta-G solvation = -31531.094041 eV Core-core repulsion = 27437.768079 eV Total energy + Delta-G solvation = -4093.325962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.69132 -40.84095 -39.93931 -37.79683 -36.08142 -35.48790 -34.60212 -33.77775 -33.71210 -29.81896 -28.73624 -28.36688 -27.40855 -26.73741 -25.73386 -24.18350 -23.35390 -22.39565 -21.27373 -20.97863 -20.27018 -19.72112 -18.27168 -18.03025 -17.42486 -17.11869 -16.72096 -16.54729 -16.37478 -16.08657 -15.84027 -15.63514 -15.61702 -15.32556 -14.93165 -14.51231 -14.43263 -14.28154 -14.14062 -13.99110 -13.77915 -13.32799 -13.23461 -13.18128 -13.01972 -13.00063 -12.74614 -12.64856 -12.49459 -12.43936 -12.38040 -12.03242 -11.95940 -11.87973 -11.67255 -11.55207 -11.52679 -11.24094 -11.22150 -10.44077 -10.25389 -10.00912 -9.32713 -9.13770 -8.42711 -6.02702 1.26836 1.32279 1.40343 1.55931 1.94307 2.18662 2.20089 2.69512 2.93925 3.13643 3.32961 3.50637 3.62301 3.69961 3.81113 3.90725 3.91575 4.07567 4.12277 4.24271 4.38106 4.40587 4.47372 4.48759 4.55587 4.58759 4.60948 4.65071 4.68874 4.81408 4.83567 4.85489 4.95068 4.97200 5.06571 5.08311 5.09494 5.14857 5.16674 5.25185 5.38886 5.51557 5.51873 5.53761 5.87862 5.89489 5.99373 6.01667 6.37689 6.57006 6.58437 6.87163 7.22409 7.38741 7.94561 8.74778 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.008431 B = 0.003649 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3320.396357 B = 7672.138150 C = 9588.786839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.063 3.937 4 H 0.102 0.898 5 C 0.486 3.514 6 O -0.575 6.575 7 N -0.703 5.703 8 C 0.153 3.847 9 C 0.079 3.921 10 N -0.660 5.660 11 C 0.068 3.932 12 C 0.452 3.548 13 O -0.606 6.606 14 N -0.594 5.594 15 C -0.325 4.325 16 H 0.059 0.941 17 C -0.012 4.012 18 N -0.932 5.932 19 Si 0.958 3.042 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.234 1.234 23 C -0.122 4.122 24 C -0.129 4.129 25 C -0.166 4.166 26 N -0.515 5.515 27 C 0.014 3.986 28 C 0.006 3.994 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.414 0.586 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.353 0.647 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.386 0.614 41 H 0.279 0.721 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.029 0.971 49 H 0.079 0.921 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.066 0.934 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.337 -21.204 -13.424 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.049 4.049 4 H 0.120 0.880 5 C 0.272 3.728 6 O -0.457 6.457 7 N -0.354 5.354 8 C 0.029 3.971 9 C -0.012 4.012 10 N -0.292 5.292 11 C -0.065 4.065 12 C 0.240 3.760 13 O -0.490 6.490 14 N -0.235 5.235 15 C -0.454 4.454 16 H 0.077 0.923 17 C -0.211 4.211 18 N -0.573 5.573 19 Si 0.779 3.221 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.158 1.158 23 C -0.160 4.160 24 C -0.167 4.167 25 C -0.206 4.206 26 N -0.237 5.237 27 C -0.135 4.135 28 C -0.142 4.142 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.250 0.750 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.173 0.827 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.221 0.779 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.048 0.952 49 H 0.098 0.902 50 H 0.076 0.924 51 H 0.098 0.902 52 H 0.085 0.915 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.085 -21.088 -13.937 25.605 hybrid contribution 1.941 1.295 0.577 2.404 sum 6.026 -19.793 -13.360 24.628 Atomic orbital electron populations 1.21624 0.93499 1.01967 1.02458 1.21552 0.98031 0.91568 1.03263 1.22101 0.88287 0.99093 0.95456 0.88037 1.22274 0.92270 0.75265 0.83029 1.90581 1.67638 1.51425 1.36008 1.45998 1.07635 1.71531 1.10209 1.21008 0.80647 1.01577 0.93904 1.22645 0.92637 0.93702 0.92259 1.59758 1.60380 0.99616 1.09482 1.21451 0.96833 0.88640 0.99528 1.20887 0.86585 0.82819 0.85746 1.90543 1.37704 1.78001 1.42708 1.42072 1.35044 1.05820 1.40608 1.18999 1.16617 0.88027 1.21804 0.92318 1.26019 1.00406 0.95269 0.99356 1.69792 1.41770 1.03707 1.42051 0.85456 0.78816 0.79313 0.78531 1.18546 1.19830 1.15757 1.23085 0.97737 0.93435 1.01713 1.22735 0.96389 0.95180 1.02368 1.23621 0.95803 0.98357 1.02776 1.62530 1.56738 1.02630 1.01800 1.22498 0.98329 0.90025 1.02631 1.22692 1.00945 0.98524 0.92036 0.92297 0.91446 0.92894 0.91109 0.89982 0.74972 0.92968 0.90231 0.82654 0.90870 0.88834 0.77869 0.91174 0.89191 0.90310 0.89312 0.90031 0.90825 0.89571 0.95242 0.90236 0.92425 0.90238 0.91519 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.66 71.98 0.70 -1.43 16 2 C -0.11 -1.77 4.92 30.60 0.15 -1.62 16 3 C 0.06 1.39 2.31 44.17 0.10 1.50 16 4 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 5 C 0.49 12.16 6.25 87.66 0.55 12.71 16 6 O -0.58 -17.48 11.97 -3.02 -0.04 -17.52 16 7 N -0.70 -15.57 5.38 -463.07 -2.49 -18.06 16 8 C 0.15 3.14 4.62 86.38 0.40 3.54 16 9 C 0.08 1.44 0.78 4.05 0.00 1.44 16 10 N -0.66 -16.71 5.37 -471.55 -2.53 -19.24 16 11 C 0.07 2.01 5.78 85.55 0.49 2.51 16 12 C 0.45 19.82 7.83 87.66 0.69 20.50 16 13 O -0.61 -32.08 15.89 -3.08 -0.05 -32.13 16 14 N -0.59 -27.89 5.09 -306.98 -1.56 -29.45 16 15 C -0.33 -18.93 10.16 84.04 0.85 -18.08 16 16 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 18 N -0.93 -56.14 13.96 21.66 0.30 -55.84 16 19 Si 0.96 39.31 27.74 68.60 1.90 41.22 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 22 H -0.23 -8.16 6.52 99.48 0.65 -7.51 16 23 C -0.12 -1.73 7.34 31.12 0.23 -1.50 16 24 C -0.13 -1.56 7.74 31.13 0.24 -1.32 16 25 C -0.17 -2.52 6.49 31.13 0.20 -2.32 16 26 N -0.51 -12.06 4.56 -927.69 -4.23 -16.29 16 27 C 0.01 0.35 9.04 127.69 1.15 1.50 16 28 C 0.01 0.12 8.57 127.69 1.09 1.21 16 29 H 0.06 0.99 7.62 -2.38 -0.02 0.97 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.18 6.25 -2.39 -0.01 1.17 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.41 8.98 8.13 -92.71 -0.75 8.23 16 35 H 0.05 1.25 7.32 -2.39 -0.02 1.23 16 36 H 0.08 1.50 7.35 -2.39 -0.02 1.48 16 37 H 0.35 9.30 8.37 -89.69 -0.75 8.55 16 38 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 39 H 0.09 2.67 6.89 -2.38 -0.02 2.65 16 40 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 41 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 42 H 0.09 1.29 7.96 -2.39 -0.02 1.27 16 43 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 44 H 0.09 0.98 7.66 -2.39 -0.02 0.96 16 45 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.03 0.87 5.96 -2.39 -0.01 0.85 16 49 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 51 H 0.08 1.42 6.24 -2.39 -0.01 1.40 16 52 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 53 H 0.05 1.22 5.35 -2.39 -0.01 1.20 16 Total: -1.00 -74.44 411.19 -2.54 -76.98 By element: Atomic # 1 Polarization: 53.04 SS G_CDS: -1.16 Total: 51.87 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 7.32 Total: 18.46 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -10.51 Total: -138.88 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.09 Total: -49.65 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.90 Total: 41.22 kcal Total: -74.44 -2.54 -76.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326912853.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.718 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds