Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00250 * 2 1 4 4 C 1.52995 * 109.47459 * 180.02562 * 3 2 1 5 5 C 1.52991 * 109.47348 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47574 * 185.55880 * 5 4 3 7 7 C 1.46904 * 110.99435 * 300.92442 * 6 5 4 8 8 C 1.52995 * 109.47194 * 289.40142 * 7 6 5 9 9 O 1.42904 * 109.46936 * 66.85849 * 8 7 6 10 10 C 1.42900 * 114.00262 * 180.02562 * 9 8 7 11 11 C 1.38579 * 111.00606 * 176.96977 * 6 5 4 12 12 N 1.31215 * 126.46861 * 359.97392 * 11 6 5 13 13 N 1.28530 * 109.86127 * 179.97438 * 12 11 6 14 14 C 1.30304 * 110.05143 * 0.02562 * 13 12 11 15 15 C 1.50698 * 126.34666 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46926 * 118.38198 * 15 14 13 17 17 C 1.52993 * 109.47255 * 358.38505 * 15 14 13 18 18 C 1.50697 * 109.46953 * 238.37664 * 15 14 13 19 19 H 1.07998 * 120.00317 * 3.56674 * 18 15 14 20 20 C 1.37885 * 119.99636 * 183.83751 * 18 15 14 21 21 N 1.31509 * 120.00035 * 353.21458 * 20 18 15 22 22 Si 1.86800 * 119.99641 * 173.21816 * 20 18 15 23 23 H 1.48499 * 109.47316 * 94.99528 * 22 20 18 24 24 H 1.48502 * 109.46942 * 214.99382 * 22 20 18 25 25 H 1.48498 * 109.47356 * 334.98842 * 22 20 18 26 26 N 1.36450 * 126.47433 * 180.28320 * 11 6 5 27 27 C 1.46496 * 127.13911 * 0.02562 * 26 11 6 28 28 H 1.08999 * 109.47297 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47253 * 300.00206 * 1 2 3 30 30 H 1.09002 * 109.47347 * 59.99603 * 1 2 3 31 31 H 1.08998 * 109.47094 * 59.99986 * 3 2 1 32 32 H 1.08999 * 109.47179 * 300.00182 * 3 2 1 33 33 H 1.08998 * 109.47091 * 59.99847 * 4 3 2 34 34 H 1.08999 * 109.46961 * 300.00178 * 4 3 2 35 35 H 1.09003 * 109.47437 * 65.55781 * 5 4 3 36 36 H 1.09008 * 109.47175 * 305.55664 * 5 4 3 37 37 H 1.08998 * 109.47521 * 49.40862 * 7 6 5 38 38 H 1.08999 * 109.47089 * 169.40707 * 7 6 5 39 39 H 1.09001 * 109.47337 * 186.85619 * 8 7 6 40 40 H 1.09003 * 109.47535 * 306.86081 * 8 7 6 41 41 H 1.08994 * 109.47405 * 59.99400 * 10 9 8 42 42 H 1.08997 * 109.47522 * 179.97438 * 10 9 8 43 43 H 1.09006 * 109.47001 * 299.99767 * 10 9 8 44 44 H 1.09000 * 109.47207 * 186.60587 * 16 15 14 45 45 H 1.09004 * 109.47125 * 306.60435 * 16 15 14 46 46 H 1.09003 * 109.47232 * 66.60144 * 16 15 14 47 47 H 1.09007 * 109.46911 * 304.17222 * 17 15 14 48 48 H 1.08994 * 109.47681 * 64.17550 * 17 15 14 49 49 H 1.09001 * 109.47374 * 184.17977 * 17 15 14 50 50 H 0.97001 * 120.00004 * 179.97438 * 21 20 18 51 51 H 1.08998 * 109.47298 * 274.62894 * 27 26 11 52 52 H 1.08998 * 109.47197 * 34.62604 * 27 26 11 53 53 H 1.09004 * 109.47397 * 154.62712 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6162 2.4691 -0.1348 7 6 6.1867 1.6793 0.9647 8 6 6.1025 2.4805 2.2654 9 8 4.7322 2.6420 2.6375 10 6 4.5411 3.3811 3.8454 11 6 6.2071 3.7205 -0.2059 12 7 5.5902 4.8779 -0.1635 13 7 6.4460 5.8325 -0.2549 14 6 7.6497 5.3448 -0.3607 15 6 8.9258 6.1360 -0.4897 16 6 9.8344 5.8364 0.7043 17 6 8.5986 7.6302 -0.5192 18 6 9.6292 5.7503 -1.7654 19 1 9.1682 5.0495 -2.4456 20 6 10.8640 6.2877 -2.0613 21 7 11.3682 7.2350 -1.3011 22 14 11.8206 5.6704 -3.5423 23 1 11.5522 6.5512 -4.7073 24 1 13.2733 5.6855 -3.2346 25 1 11.3970 4.2835 -3.8622 26 7 7.5397 3.9820 -0.3392 27 6 8.6273 3.0053 -0.4358 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6435 0.8891 35 1 3.9175 3.0866 0.9360 36 1 3.7593 3.1578 -0.8356 37 1 5.6270 0.7503 1.0733 38 1 7.2297 1.4514 0.7453 39 1 6.6330 1.9483 3.0549 40 1 6.5570 3.4603 2.1187 41 1 4.9632 4.3795 3.7312 42 1 3.4751 3.4600 4.0585 43 1 5.0394 2.8680 4.6680 44 1 10.7034 6.4936 0.6735 45 1 9.2846 6.0043 1.6305 46 1 10.1624 4.7979 0.6598 47 1 7.8926 7.8317 -1.3250 48 1 8.1571 7.9245 0.4328 49 1 9.5131 8.1992 -0.6869 50 1 12.2370 7.6128 -1.5091 51 1 8.9420 2.7116 0.5656 52 1 8.2796 2.1269 -0.9795 53 1 9.4696 3.4506 -0.9654 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338246198.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -16.886212 kcal Electronic energy + Delta-G solvation = -32178.656726 eV Core-core repulsion = 28087.254977 eV Total energy + Delta-G solvation = -4091.401749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.84759 -40.17514 -38.80222 -37.91611 -37.39937 -35.59595 -33.62798 -33.09160 -31.21747 -29.28565 -28.39475 -27.86720 -27.55521 -27.27200 -27.08605 -25.48987 -24.33304 -23.44153 -22.28807 -21.17934 -20.53826 -18.53103 -18.09808 -17.92123 -17.59253 -17.29815 -16.96857 -16.85584 -16.64216 -16.50054 -16.06487 -15.67196 -15.35763 -15.15417 -14.92930 -14.72342 -14.33531 -13.92915 -13.83108 -13.48510 -13.32331 -13.29001 -13.06740 -12.97729 -12.93208 -12.72902 -12.66493 -12.58652 -12.52541 -12.31501 -12.20175 -12.16375 -12.00769 -11.79218 -11.74743 -11.64981 -11.38484 -11.02656 -10.90617 -10.72133 -10.57803 -10.39402 -10.31352 -9.03967 -8.06628 -6.23226 1.05227 1.43985 1.47087 1.49178 1.56107 2.05450 2.44983 2.54835 2.74363 3.07636 3.16319 3.75260 3.81474 3.92784 4.00448 4.07384 4.11525 4.22579 4.26455 4.32505 4.37339 4.40655 4.43627 4.44280 4.52765 4.56971 4.58142 4.63316 4.70914 4.71957 4.75150 4.77344 4.83948 4.87640 4.91606 4.95557 4.98639 5.11912 5.17758 5.27169 5.35704 5.38626 5.55420 5.57315 5.68807 5.81396 5.97608 6.03863 6.09803 6.25049 6.29293 6.40309 6.75511 7.43885 8.02529 8.93574 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.016901 B = 0.002982 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.276793 B = 9388.753971 C = 9978.200414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.068 3.932 4 C -0.099 4.099 5 C 0.076 3.924 6 N -0.441 5.441 7 C 0.044 3.956 8 C 0.031 3.969 9 O -0.388 6.388 10 C 0.029 3.971 11 C 0.347 3.653 12 N -0.361 5.361 13 N -0.346 5.346 14 C 0.225 3.775 15 C 0.143 3.857 16 C -0.114 4.114 17 C -0.106 4.106 18 C -0.521 4.521 19 H 0.045 0.955 20 C 0.039 3.961 21 N -0.895 5.895 22 Si 0.948 3.052 23 H -0.288 1.288 24 H -0.278 1.278 25 H -0.267 1.267 26 N -0.475 5.475 27 C 0.067 3.933 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.016 0.984 41 H 0.020 0.980 42 H 0.101 0.899 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.015 0.985 46 H 0.045 0.955 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.075 0.925 50 H 0.265 0.735 51 H 0.093 0.907 52 H 0.103 0.897 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 -16.218 8.271 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.137 4.137 5 C -0.051 4.051 6 N -0.165 5.165 7 C -0.082 4.082 8 C -0.047 4.047 9 O -0.308 6.308 10 C -0.067 4.067 11 C -0.011 4.011 12 N -0.205 5.205 13 N -0.184 5.184 14 C -0.044 4.044 15 C 0.140 3.860 16 C -0.172 4.172 17 C -0.164 4.164 18 C -0.560 4.560 19 H 0.063 0.937 20 C -0.163 4.163 21 N -0.532 5.532 22 Si 0.774 3.226 23 H -0.214 1.214 24 H -0.204 1.204 25 H -0.191 1.191 26 N -0.169 5.169 27 C -0.074 4.074 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.146 0.854 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.119 0.881 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.034 0.966 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.094 0.906 50 H 0.075 0.925 51 H 0.111 0.889 52 H 0.121 0.879 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.592 -15.627 7.833 21.544 hybrid contribution 1.401 0.215 -0.254 1.440 sum -11.191 -15.413 7.579 20.500 Atomic orbital electron populations 1.22918 0.79599 1.03814 1.00725 1.87804 1.21359 1.28436 1.95599 1.22358 0.93449 0.84392 1.00700 1.21349 0.93159 0.95429 1.03733 1.22016 0.82509 0.97836 1.02743 1.58955 1.07151 1.06847 1.43519 1.22874 1.03153 0.97391 0.84818 1.23258 0.84178 0.98510 0.98739 1.87892 1.24655 1.75494 1.42715 1.22826 1.03338 0.94292 0.86261 1.22618 0.82006 0.92858 1.03578 1.74347 1.26029 0.95228 1.24890 1.73873 0.98160 1.24203 1.22163 1.25698 0.98028 0.80796 0.99919 1.16804 0.83230 0.90231 0.95714 1.21665 1.00256 1.01091 0.94227 1.21499 1.00243 0.97531 0.97168 1.20919 1.03043 1.27211 1.04815 0.93722 1.25413 0.97873 0.94397 0.98572 1.69921 1.18499 1.25318 1.39476 0.85705 0.78215 0.78916 0.79761 1.21447 1.20352 1.19139 1.46032 1.07056 1.07809 1.55994 1.22446 0.89088 0.91412 1.04485 0.88309 0.93284 0.93512 0.92653 0.93137 0.90767 0.89939 0.90757 0.92125 0.85417 0.87050 0.90055 0.96600 0.96135 0.88083 0.92376 0.90737 0.96572 0.93640 0.96461 0.96257 0.90616 0.92505 0.88904 0.87859 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.52 10.70 -148.98 -1.59 -10.12 16 3 C 0.07 1.35 5.94 71.98 0.43 1.78 16 4 C -0.10 -2.06 5.18 30.59 0.16 -1.91 16 5 C 0.08 2.04 3.90 86.30 0.34 2.37 16 6 N -0.44 -12.58 4.83 -706.03 -3.41 -15.99 16 7 C 0.04 0.93 5.48 86.30 0.47 1.41 16 8 C 0.03 0.73 5.79 71.98 0.42 1.15 16 9 O -0.39 -9.32 7.61 -148.98 -1.13 -10.45 16 10 C 0.03 0.59 11.01 113.37 1.25 1.84 16 11 C 0.35 12.92 5.39 260.12 1.40 14.33 16 12 N -0.36 -16.13 11.30 -58.01 -0.66 -16.78 16 13 N -0.35 -17.11 11.49 -49.53 -0.57 -17.68 16 14 C 0.23 10.40 6.28 137.63 0.86 11.26 16 15 C 0.14 6.87 0.51 -53.68 -0.03 6.84 16 16 C -0.11 -5.03 7.95 71.98 0.57 -4.45 16 17 C -0.11 -5.35 7.84 71.98 0.56 -4.79 16 18 C -0.52 -26.18 6.24 25.60 0.16 -26.02 16 19 H 0.04 2.31 7.51 -2.91 -0.02 2.29 16 20 C 0.04 1.93 5.12 84.66 0.43 2.36 16 21 N -0.89 -45.74 9.45 21.45 0.20 -45.54 16 22 Si 0.95 39.99 29.54 68.60 2.03 42.01 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 N -0.48 -18.18 3.21 -538.19 -1.73 -19.91 16 27 C 0.07 1.98 8.18 127.77 1.05 3.03 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.08 1.61 6.47 -2.39 -0.02 1.59 16 35 H 0.07 2.20 5.37 -2.39 -0.01 2.19 16 36 H 0.06 1.87 8.02 -2.38 -0.02 1.85 16 37 H 0.13 2.12 5.89 -2.39 -0.01 2.11 16 38 H 0.11 1.99 5.74 -2.39 -0.01 1.98 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.02 0.49 6.80 -2.39 -0.02 0.48 16 41 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.07 3.56 6.25 -2.39 -0.01 3.54 16 45 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 46 H 0.04 1.81 6.65 -2.39 -0.02 1.80 16 47 H 0.02 0.87 8.13 -2.38 -0.02 0.85 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.08 3.99 6.04 -2.39 -0.01 3.97 16 50 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 51 H 0.09 2.17 7.77 -2.39 -0.02 2.16 16 52 H 0.10 2.48 7.76 -2.39 -0.02 2.46 16 53 H 0.10 3.35 5.65 -2.38 -0.01 3.34 16 Total: -1.00 -65.11 405.31 3.35 -61.76 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.89 Total: 21.89 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 9.32 Total: 10.80 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.16 Total: -115.90 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -2.73 Total: -20.57 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Total: -65.11 3.35 -61.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338246198.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.873 kcal (2) G-P(sol) polarization free energy of solvation -65.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds