Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47215 * 2 1 4 4 C 1.42903 * 113.99945 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47082 * 180.02562 * 4 3 2 6 6 C 1.52993 * 109.47019 * 180.02562 * 5 4 3 7 7 N 1.46497 * 109.47267 * 178.82394 * 6 5 4 8 8 C 1.36739 * 127.13633 * 84.00908 * 7 6 5 9 9 C 1.50705 * 126.34974 * 0.02562 * 8 7 6 10 10 H 1.08991 * 109.46422 * 345.00222 * 9 8 7 11 11 O 1.42898 * 109.46894 * 225.00124 * 9 8 7 12 12 C 1.53007 * 109.46755 * 104.99966 * 9 8 7 13 13 C 1.52996 * 109.46578 * 185.00032 * 12 9 8 14 14 N 1.30300 * 107.30335 * 180.26638 * 8 7 6 15 15 N 1.28523 * 110.05296 * 359.56019 * 14 8 7 16 16 C 1.31218 * 109.86118 * 0.44808 * 15 14 8 17 17 N 1.38584 * 126.47171 * 179.72821 * 16 15 14 18 18 C 1.46903 * 110.99877 * 246.92845 * 17 16 15 19 19 C 1.46893 * 110.99925 * 10.88379 * 17 16 15 20 20 H 1.09003 * 109.47436 * 55.00159 * 19 17 16 21 21 C 1.52994 * 109.47698 * 294.99891 * 19 17 16 22 22 C 1.50704 * 109.46970 * 174.99634 * 19 17 16 23 23 H 1.07998 * 120.00037 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99873 * 180.02562 * 22 19 17 25 25 N 1.31514 * 120.00398 * 359.97438 * 24 22 19 26 26 Si 1.86799 * 119.99707 * 180.02562 * 24 22 19 27 27 H 1.48507 * 109.47131 * 60.00022 * 26 24 22 28 28 H 1.48497 * 109.47049 * 180.02562 * 26 24 22 29 29 H 1.48496 * 109.47421 * 300.00215 * 26 24 22 30 30 H 1.08999 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47191 * 299.99875 * 1 2 3 32 32 H 1.08996 * 109.47366 * 60.00041 * 1 2 3 33 33 H 1.09004 * 109.47343 * 239.99946 * 2 1 3 34 34 H 1.09007 * 109.46955 * 120.00192 * 2 1 3 35 35 H 1.09000 * 109.47166 * 59.99746 * 4 3 2 36 36 H 1.09007 * 109.46960 * 299.99804 * 4 3 2 37 37 H 1.08991 * 109.46965 * 59.99682 * 5 4 3 38 38 H 1.08997 * 109.46908 * 299.99641 * 5 4 3 39 39 H 1.09002 * 109.47903 * 58.82199 * 6 5 4 40 40 H 1.09003 * 109.47190 * 298.81911 * 6 5 4 41 41 H 0.96702 * 114.00025 * 299.99648 * 11 9 8 42 42 H 1.09000 * 109.47019 * 304.99987 * 12 9 8 43 43 H 1.08994 * 109.46982 * 65.00466 * 12 9 8 44 44 H 1.09004 * 109.47146 * 60.00318 * 13 12 9 45 45 H 1.08997 * 109.46841 * 179.97438 * 13 12 9 46 46 H 1.09000 * 109.47618 * 300.00227 * 13 12 9 47 47 H 1.09008 * 109.47095 * 53.11162 * 18 17 16 48 48 H 1.08995 * 109.46819 * 173.10815 * 18 17 16 49 49 H 1.08997 * 109.47031 * 293.11014 * 18 17 16 50 50 H 1.09000 * 109.47202 * 59.99921 * 21 19 17 51 51 H 1.08997 * 109.47917 * 180.02562 * 21 19 17 52 52 H 1.09009 * 109.47073 * 300.00179 * 21 19 17 53 53 H 0.96994 * 120.00049 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 0.0001 6 6 5.3506 3.0591 -0.0012 7 7 5.7284 4.4742 -0.0288 8 6 5.8306 5.3224 1.0388 9 6 5.5739 4.9757 2.4828 10 1 5.0400 4.0272 2.5392 11 8 4.7851 6.0031 3.0863 12 6 6.9075 4.8552 3.2232 13 6 6.6543 4.3820 4.6559 14 7 6.1861 6.4873 0.5757 15 7 6.3233 6.4308 -0.7009 16 6 6.0513 5.2194 -1.1254 17 7 6.0855 4.7798 -2.4392 18 6 4.7378 4.4426 -2.9167 19 6 6.7189 5.7773 -3.3118 20 1 7.7081 6.0226 -2.9251 21 6 5.8583 7.0417 -3.3497 22 6 6.8490 5.2162 -4.7044 23 1 6.4961 4.2185 -4.9197 24 6 7.4187 5.9766 -5.7035 25 7 7.8481 7.1918 -5.4415 26 14 7.5794 5.2814 -7.4298 27 1 6.2315 4.9483 -7.9568 28 1 8.2209 6.2893 -8.3117 29 1 8.4138 4.0536 -7.3934 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8333 0.9766 -0.8908 36 1 3.8340 0.9763 0.8892 37 1 3.4230 3.4213 0.8905 38 1 3.4223 3.4223 -0.8894 39 1 5.7541 2.5580 -0.8811 40 1 5.7527 2.5933 0.8986 41 1 5.1995 6.8768 3.0720 42 1 7.5442 4.1347 2.7098 43 1 7.4010 5.8268 3.2433 44 1 6.1607 3.4104 4.6359 45 1 7.6043 4.2957 5.1832 46 1 6.0175 5.1024 5.1694 47 1 4.0701 5.2872 -2.7465 48 1 4.7756 4.2184 -3.9826 49 1 4.3677 3.5720 -2.3751 50 1 5.7642 7.4476 -2.3425 51 1 6.3280 7.7818 -3.9976 52 1 4.8691 6.7965 -3.7365 53 1 8.2491 7.7265 -6.1443 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342320315.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -33.201455 kcal Electronic energy + Delta-G solvation = -31507.717287 eV Core-core repulsion = 27415.608056 eV Total energy + Delta-G solvation = -4092.109231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.04535 -39.32459 -39.17458 -38.47025 -36.94432 -34.82623 -33.82038 -33.37584 -31.49603 -31.36509 -30.55917 -28.02369 -27.25997 -26.78944 -26.46580 -23.67429 -23.60934 -23.35756 -22.68227 -21.62294 -21.09704 -18.69431 -18.25358 -17.76803 -17.45951 -17.34506 -17.11652 -16.98295 -16.59952 -16.24619 -16.04398 -15.75471 -15.44161 -15.19456 -14.97957 -14.40190 -14.17389 -14.05384 -13.96613 -13.59123 -13.31620 -13.21512 -13.15559 -13.09360 -12.97872 -12.72771 -12.67993 -12.65503 -12.55004 -12.31394 -12.17318 -12.11580 -11.99749 -11.94136 -11.87282 -11.80933 -11.47833 -11.32208 -11.13694 -10.87542 -10.53670 -10.50504 -10.49217 -9.13110 -8.12407 -6.27907 0.73527 1.23949 1.45210 1.47238 1.54987 1.82306 2.41000 2.64042 2.97946 3.16061 3.18568 3.41228 3.56142 3.76670 3.89366 3.92833 3.98007 4.03617 4.15241 4.21111 4.26515 4.27561 4.40324 4.41288 4.45032 4.49472 4.53598 4.57961 4.62208 4.76464 4.79586 4.85150 4.87124 4.91262 5.02635 5.06752 5.09603 5.11085 5.12882 5.22085 5.26318 5.28660 5.42083 5.43857 5.59129 5.60660 5.82315 6.02013 6.20780 6.28537 6.55696 6.56858 6.81160 7.40960 7.80315 8.93996 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.007908 B = 0.003725 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3540.085104 B = 7514.047638 C =10388.421475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 O -0.416 6.416 4 C 0.071 3.929 5 C -0.133 4.133 6 C 0.105 3.895 7 N -0.469 5.469 8 C 0.139 3.861 9 C 0.212 3.788 10 H 0.134 0.866 11 O -0.552 6.552 12 C -0.144 4.144 13 C -0.141 4.141 14 N -0.318 5.318 15 N -0.359 5.359 16 C 0.369 3.631 17 N -0.455 5.455 18 C 0.038 3.962 19 C 0.243 3.757 20 H 0.002 0.998 21 C -0.159 4.159 22 C -0.526 4.526 23 H 0.073 0.927 24 C 0.013 3.987 25 N -0.919 5.919 26 Si 0.969 3.031 27 H -0.266 1.266 28 H -0.288 1.288 29 H -0.268 1.268 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.392 0.608 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.017 0.983 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.045 0.955 51 H 0.060 0.940 52 H 0.024 0.976 53 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 -17.187 17.629 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 O -0.336 6.336 4 C -0.006 4.006 5 C -0.171 4.171 6 C -0.017 4.017 7 N -0.165 5.165 8 C -0.130 4.130 9 C 0.150 3.850 10 H 0.151 0.849 11 O -0.357 6.357 12 C -0.183 4.183 13 C -0.198 4.198 14 N -0.157 5.157 15 N -0.203 5.203 16 C 0.011 3.989 17 N -0.178 5.178 18 C -0.109 4.109 19 C 0.137 3.863 20 H 0.020 0.980 21 C -0.218 4.218 22 C -0.565 4.565 23 H 0.091 0.909 24 C -0.187 4.187 25 N -0.558 5.558 26 Si 0.794 3.206 27 H -0.191 1.191 28 H -0.214 1.214 29 H -0.193 1.193 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.242 0.758 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.036 0.964 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.063 0.937 51 H 0.079 0.921 52 H 0.043 0.957 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.416 -16.346 17.583 25.788 hybrid contribution 0.245 0.084 -1.516 1.538 sum -9.171 -16.262 16.068 24.632 Atomic orbital electron populations 1.21782 0.93461 1.03313 1.02445 1.22656 0.95988 0.82632 1.01213 1.87862 1.21678 1.28350 1.95697 1.22332 0.81272 0.94670 1.02359 1.21875 0.93643 0.97854 1.03720 1.22082 0.95811 0.76397 1.07363 1.46310 1.52884 1.12419 1.04863 1.26323 1.04755 0.87670 0.94293 1.20367 0.93751 0.92556 0.78351 0.84885 1.86510 1.48181 1.21520 1.79514 1.22163 0.95355 1.03015 0.97742 1.21671 1.02422 1.01931 0.93767 1.73731 1.18095 1.20631 1.03281 1.74727 1.25720 1.15839 1.04023 1.23154 0.99421 0.86941 0.89364 1.59187 1.20635 1.42325 0.95676 1.22527 0.85660 0.99631 1.03081 1.18908 0.91409 0.86049 0.89889 0.98011 1.22294 0.98096 1.01336 1.00111 1.21297 1.40700 1.01285 0.93169 0.90943 1.25790 0.94747 0.94989 1.03164 1.70078 1.40740 1.10400 1.34564 0.85444 0.78715 0.77939 0.78523 1.19060 1.21380 1.19328 0.89080 0.92363 0.92868 0.92575 0.91790 0.91842 0.90289 0.90553 0.92146 0.87478 0.84995 0.75785 0.90758 0.91709 0.91275 0.91552 0.92051 0.96395 0.89191 0.89363 0.93653 0.92072 0.95716 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 71.98 0.74 -1.11 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.42 -7.95 10.34 -148.98 -1.54 -9.49 16 4 C 0.07 1.03 5.94 71.98 0.43 1.46 16 5 C -0.13 -2.53 5.62 30.59 0.17 -2.36 16 6 C 0.11 2.10 4.92 86.38 0.42 2.52 16 7 N -0.47 -14.54 2.81 -514.85 -1.45 -15.99 16 8 C 0.14 4.31 6.93 137.64 0.95 5.26 16 9 C 0.21 4.42 3.34 29.85 0.10 4.52 16 10 H 0.13 2.10 7.39 -2.39 -0.02 2.08 16 11 O -0.55 -12.44 12.86 -148.98 -1.92 -14.36 16 12 C -0.14 -2.51 5.60 30.60 0.17 -2.34 16 13 C -0.14 -1.76 9.81 71.98 0.71 -1.06 16 14 N -0.32 -12.85 12.09 -49.53 -0.60 -13.45 16 15 N -0.36 -16.97 9.03 -58.00 -0.52 -17.50 16 16 C 0.37 15.42 6.67 260.11 1.74 17.16 16 17 N -0.45 -19.92 4.74 -711.01 -3.37 -23.28 16 18 C 0.04 1.41 8.39 127.69 1.07 2.48 16 19 C 0.24 12.99 2.06 44.17 0.09 13.08 16 20 H 0.00 0.12 8.09 -2.39 -0.02 0.10 16 21 C -0.16 -8.58 8.28 71.98 0.60 -7.98 16 22 C -0.53 -28.54 7.78 25.60 0.20 -28.35 16 23 H 0.07 3.71 6.83 -2.91 -0.02 3.69 16 24 C 0.01 0.69 5.30 84.65 0.45 1.14 16 25 N -0.92 -54.30 11.32 21.45 0.24 -54.06 16 26 Si 0.97 42.95 29.54 68.60 2.03 44.97 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.06 1.47 6.02 -2.39 -0.01 1.46 16 39 H 0.11 2.20 7.86 -2.39 -0.02 2.18 16 40 H 0.13 1.59 7.81 -2.39 -0.02 1.57 16 41 H 0.39 8.07 8.97 -74.06 -0.66 7.40 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.82 7.82 -2.39 -0.02 0.80 16 47 H 0.02 0.70 6.87 -2.38 -0.02 0.68 16 48 H 0.09 3.49 6.26 -2.39 -0.01 3.47 16 49 H 0.09 2.61 4.71 -2.39 -0.01 2.59 16 50 H 0.04 2.45 5.50 -2.39 -0.01 2.44 16 51 H 0.06 3.62 6.07 -2.39 -0.01 3.61 16 52 H 0.02 1.24 6.64 -2.38 -0.02 1.23 16 53 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -74.64 414.44 1.43 -73.20 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.24 Total: 24.38 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 8.32 Total: 5.57 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -5.69 Total: -124.27 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -3.46 Total: -23.85 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.64 1.43 -73.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342320315.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.004 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds