Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00231 * 2 1 4 4 C 1.53004 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.52989 * 109.47069 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47371 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99964 * 66.03845 * 6 5 4 8 8 C 1.38581 * 111.00534 * 190.00074 * 6 5 4 9 9 N 1.31221 * 126.46758 * 350.66960 * 8 6 5 10 10 N 1.28532 * 109.85606 * 180.02562 * 9 8 6 11 11 C 1.30295 * 110.05385 * 359.97438 * 10 9 8 12 12 C 1.50707 * 126.34450 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46849 * 234.05225 * 12 11 10 14 14 C 1.52999 * 109.46962 * 114.05266 * 12 11 10 15 15 C 1.50704 * 109.47099 * 354.05283 * 12 11 10 16 16 H 1.07997 * 119.99792 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99676 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99915 * 359.72749 * 17 15 12 19 19 Si 1.86796 * 119.99799 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46969 * 60.00679 * 19 17 15 21 21 H 1.48504 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47511 * 300.00480 * 19 17 15 23 23 N 1.36452 * 126.47671 * 170.98698 * 8 6 5 24 24 C 1.46505 * 127.13540 * 359.97438 * 23 8 6 25 25 C 1.52993 * 109.47322 * 92.42312 * 24 23 8 26 26 O 1.42896 * 109.47523 * 185.56445 * 25 24 23 27 27 C 1.42897 * 114.00471 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46681 * 60.00260 * 1 2 3 29 29 H 1.08999 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 300.00268 * 1 2 3 31 31 H 1.09001 * 109.47014 * 59.99828 * 3 2 1 32 32 H 1.08999 * 109.46953 * 299.99771 * 3 2 1 33 33 H 1.08998 * 109.47002 * 59.99347 * 4 3 2 34 34 H 1.09000 * 109.46863 * 300.00250 * 4 3 2 35 35 H 1.08998 * 109.47863 * 59.99726 * 5 4 3 36 36 H 1.09008 * 109.47335 * 299.99438 * 5 4 3 37 37 H 1.09011 * 109.47283 * 193.25694 * 7 6 5 38 38 H 1.08999 * 109.47487 * 313.25762 * 7 6 5 39 39 H 1.09006 * 109.47199 * 73.26133 * 7 6 5 40 40 H 1.09007 * 109.46637 * 169.61276 * 13 12 11 41 41 H 1.08998 * 109.47283 * 289.60424 * 13 12 11 42 42 H 1.08998 * 109.47346 * 49.61262 * 13 12 11 43 43 H 1.09000 * 109.47163 * 304.66601 * 14 12 11 44 44 H 1.09001 * 109.47209 * 64.66240 * 14 12 11 45 45 H 1.08994 * 109.47055 * 184.66403 * 14 12 11 46 46 H 0.97006 * 119.99729 * 179.97438 * 18 17 15 47 47 H 1.09006 * 109.46659 * 212.42372 * 24 23 8 48 48 H 1.08999 * 109.46897 * 332.42319 * 24 23 8 49 49 H 1.08999 * 109.47227 * 305.56775 * 25 24 23 50 50 H 1.09004 * 109.47225 * 65.55991 * 25 24 23 51 51 H 1.09006 * 109.46624 * 300.00196 * 27 26 25 52 52 H 1.08997 * 109.47393 * 59.99488 * 27 26 25 53 53 H 1.08999 * 109.47149 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5821 0.0013 6 7 5.6223 2.4662 0.0013 7 6 6.1032 1.8699 -1.2522 8 6 6.2181 3.6969 0.2265 9 7 5.6157 4.8625 0.2498 10 7 6.4718 5.7917 0.4855 11 6 7.6611 5.2784 0.6259 12 6 8.9327 6.0354 0.9109 13 6 9.9834 5.6828 -0.1439 14 6 9.4539 5.6532 2.2976 15 6 8.6559 7.5163 0.8688 16 1 7.6589 7.8734 0.6573 17 6 9.6754 8.4149 1.1013 18 7 10.8881 7.9798 1.3651 19 14 9.3325 10.2504 1.0484 20 1 8.3120 10.5930 2.0715 21 1 10.5854 10.9964 1.3293 22 1 8.8275 10.6211 -0.2980 23 7 7.5428 3.9263 0.4600 24 6 8.6152 2.9302 0.5235 25 6 9.2524 2.7780 -0.8590 26 8 10.2087 1.7166 -0.8286 27 6 10.8659 1.4903 -2.0771 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6434 -0.8890 34 1 3.8567 0.6437 0.8908 35 1 3.8359 3.1230 0.8912 36 1 3.8367 3.1233 -0.8888 37 1 7.1476 1.5790 -1.1390 38 1 5.5046 0.9904 -1.4893 39 1 6.0143 2.5981 -2.0585 40 1 10.8326 6.3599 -0.0513 41 1 10.3189 4.6566 0.0063 42 1 9.5473 5.7807 -1.1381 43 1 8.6744 5.8273 3.0394 44 1 9.7321 4.5994 2.3035 45 1 10.3264 6.2607 2.5380 46 1 11.6054 8.6122 1.5283 47 1 9.3712 3.2554 1.2383 48 1 8.2030 1.9724 0.8410 49 1 8.4791 2.5494 -1.5924 50 1 9.7503 3.7078 -1.1340 51 1 10.1262 1.2352 -2.8360 52 1 11.3974 2.3935 -2.3769 53 1 11.5750 0.6693 -1.9708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342902306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = 9.646770 kcal Electronic energy + Delta-G solvation = -31640.043853 eV Core-core repulsion = 27549.792661 eV Total energy + Delta-G solvation = -4090.251192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40592 -38.50622 -38.12686 -37.53402 -35.81970 -34.52198 -32.51210 -31.17624 -29.76316 -28.74001 -27.53892 -26.53103 -26.08384 -25.98239 -25.22223 -24.32052 -23.31798 -21.97209 -21.30522 -20.13368 -19.13156 -17.30620 -16.75225 -16.61198 -16.33911 -16.18234 -16.00295 -15.71045 -15.34665 -15.18090 -14.92113 -14.71797 -14.51030 -14.19446 -13.75042 -13.56933 -13.32112 -12.77442 -12.54129 -12.34801 -12.14567 -12.01649 -11.95220 -11.82208 -11.56918 -11.41984 -11.35407 -11.31727 -11.07368 -10.95314 -10.83878 -10.64923 -10.59485 -10.23776 -10.08295 -10.01080 -9.93063 -9.83134 -9.64091 -9.57141 -9.20413 -8.77285 -8.36625 -7.73926 -6.03621 -4.10463 2.32493 2.61376 3.31190 3.35971 3.38373 3.44999 3.60073 3.77356 4.15975 4.43779 4.69459 4.76193 4.81977 4.90333 4.94337 5.04222 5.08008 5.12311 5.17654 5.20555 5.22773 5.25090 5.29299 5.30291 5.35180 5.39971 5.45501 5.51991 5.54750 5.59371 5.64966 5.81019 5.81790 5.86317 6.03229 6.17119 6.41860 6.52097 6.62148 6.64947 6.73610 6.81067 6.89026 6.98267 7.10295 7.18920 7.31996 7.57995 7.76577 7.83979 8.08886 8.30186 8.96486 9.50947 9.61142 10.99067 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.003155 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.354965 B = 8872.433850 C =10886.894949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.117 4.117 5 C 0.077 3.923 6 N -0.452 5.452 7 C 0.012 3.988 8 C 0.318 3.682 9 N -0.327 5.327 10 N -0.285 5.285 11 C 0.242 3.758 12 C 0.147 3.853 13 C -0.144 4.144 14 C -0.134 4.134 15 C -0.490 4.490 16 H 0.076 0.924 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.277 1.277 23 N -0.478 5.478 24 C 0.113 3.887 25 C 0.026 3.974 26 O -0.386 6.386 27 C 0.034 3.966 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.101 0.899 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.031 0.969 44 H 0.012 0.988 45 H 0.101 0.899 46 H 0.262 0.738 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.052 0.948 50 H 0.083 0.917 51 H 0.039 0.961 52 H 0.045 0.955 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 -16.818 -5.647 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.155 4.155 5 C -0.050 4.050 6 N -0.176 5.176 7 C -0.135 4.135 8 C -0.038 4.038 9 N -0.171 5.171 10 N -0.121 5.121 11 C -0.025 4.025 12 C 0.144 3.856 13 C -0.202 4.202 14 C -0.192 4.192 15 C -0.529 4.529 16 H 0.095 0.905 17 C -0.139 4.139 18 N -0.533 5.533 19 Si 0.729 3.271 20 H -0.201 1.201 21 H -0.215 1.215 22 H -0.203 1.203 23 N -0.174 5.174 24 C -0.011 4.011 25 C -0.051 4.051 26 O -0.304 6.304 27 C -0.063 4.063 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.120 0.880 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.120 0.880 46 H 0.072 0.928 47 H 0.129 0.871 48 H 0.117 0.883 49 H 0.070 0.930 50 H 0.101 0.899 51 H 0.058 0.942 52 H 0.064 0.936 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.715 -16.307 -5.141 19.191 hybrid contribution 0.372 0.679 -0.867 1.162 sum -8.343 -15.628 -6.008 18.707 Atomic orbital electron populations 1.22735 0.80989 1.02663 1.00080 1.87852 1.19729 1.28164 1.95474 1.22443 0.93784 0.84520 1.00643 1.21538 0.92729 0.97108 1.04104 1.21841 0.83504 0.96172 1.03510 1.58523 1.07740 1.16755 1.34540 1.22829 1.02201 0.99720 0.88799 1.22358 0.82861 0.92001 1.06608 1.74561 1.26181 0.94694 1.21690 1.74081 0.97440 1.21881 1.18727 1.26213 0.99517 0.78069 0.98661 1.16917 0.82272 0.93378 0.93024 1.22212 1.02075 0.99063 0.96809 1.21949 1.03034 0.97360 0.96888 1.21038 0.96610 0.88010 1.47250 0.90549 1.24872 0.94926 0.99124 0.94943 1.69759 1.00656 1.34253 1.48657 0.86494 0.77313 0.84517 0.78776 1.20118 1.21454 1.20269 1.46106 1.06626 1.08843 1.55860 1.21570 0.89587 0.92133 0.97832 1.23417 0.92268 0.92256 0.97157 1.87782 1.55930 1.53597 1.33134 1.22754 0.96572 1.01328 0.85656 0.94086 0.89691 0.93982 0.92841 0.93119 0.90902 0.90023 0.89168 0.92889 0.90372 0.89604 0.94373 0.88027 0.95697 0.95622 0.94990 0.96962 0.88040 0.92818 0.87110 0.88308 0.93036 0.89880 0.94229 0.93625 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.09 10.70 -35.23 -0.38 -4.47 16 3 C 0.06 0.60 5.94 37.16 0.22 0.82 16 4 C -0.12 -1.18 5.54 -26.73 -0.15 -1.32 16 5 C 0.08 0.97 4.38 -3.83 -0.02 0.95 16 6 N -0.45 -6.50 4.78 -182.38 -0.87 -7.37 16 7 C 0.01 0.14 8.84 60.06 0.53 0.67 16 8 C 0.32 5.90 6.98 -318.87 -2.23 3.67 16 9 N -0.33 -7.13 11.28 30.32 0.34 -6.79 16 10 N -0.29 -6.99 11.00 32.99 0.36 -6.63 16 11 C 0.24 5.50 6.32 -154.02 -0.97 4.53 16 12 C 0.15 3.48 0.50 -156.81 -0.08 3.40 16 13 C -0.14 -3.15 6.82 37.16 0.25 -2.90 16 14 C -0.13 -3.06 8.19 37.16 0.30 -2.75 16 15 C -0.49 -13.11 7.91 -34.44 -0.27 -13.39 16 16 H 0.08 2.17 6.95 -52.49 -0.36 1.80 16 17 C 0.06 1.61 5.10 -17.82 -0.09 1.52 16 18 N -0.89 -23.31 9.31 55.43 0.52 -22.79 16 19 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 N -0.48 -9.03 2.81 -114.08 -0.32 -9.35 16 24 C 0.11 1.76 4.81 -4.04 -0.02 1.74 16 25 C 0.03 0.37 5.31 37.15 0.20 0.57 16 26 O -0.39 -5.14 10.70 -35.23 -0.38 -5.52 16 27 C 0.03 0.34 11.01 101.05 1.11 1.45 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.69 6.32 -51.93 -0.33 0.36 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.26 7.90 -51.93 -0.41 0.85 16 36 H 0.05 0.68 8.12 -51.92 -0.42 0.26 16 37 H 0.08 0.91 4.69 -51.92 -0.24 0.66 16 38 H 0.09 0.79 6.00 -51.93 -0.31 0.48 16 39 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 40 H 0.10 2.46 5.88 -51.93 -0.31 2.16 16 41 H 0.02 0.47 4.40 -51.93 -0.23 0.25 16 42 H 0.02 0.55 7.83 -51.93 -0.41 0.14 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.01 0.24 5.75 -51.93 -0.30 -0.06 16 45 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 46 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 47 H 0.11 1.82 4.98 -51.93 -0.26 1.56 16 48 H 0.10 1.39 7.94 -51.93 -0.41 0.98 16 49 H 0.05 0.69 5.69 -51.93 -0.30 0.39 16 50 H 0.08 1.32 4.59 -51.93 -0.24 1.08 16 51 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 53 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -30.31 400.89 -8.41 -38.73 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.61 Total: 1.72 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -0.09 Total: 0.31 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.03 Total: -52.92 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.75 Total: -9.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.31 -8.41 -38.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342902306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.374 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds