Wall clock time and date at job start Sat Apr 11 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00231 * 2 1 4 4 C 1.53004 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.52989 * 109.47069 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47371 * 180.02562 * 5 4 3 7 7 C 1.46896 * 110.99964 * 66.03845 * 6 5 4 8 8 C 1.38581 * 111.00534 * 190.00074 * 6 5 4 9 9 N 1.31221 * 126.46758 * 350.66960 * 8 6 5 10 10 N 1.28532 * 109.85606 * 180.02562 * 9 8 6 11 11 C 1.30295 * 110.05385 * 359.97438 * 10 9 8 12 12 C 1.50707 * 126.34450 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46849 * 234.05225 * 12 11 10 14 14 C 1.52999 * 109.46962 * 114.05266 * 12 11 10 15 15 C 1.50704 * 109.47099 * 354.05283 * 12 11 10 16 16 H 1.07997 * 119.99792 * 0.02562 * 15 12 11 17 17 C 1.37875 * 119.99676 * 179.97438 * 15 12 11 18 18 N 1.31515 * 119.99915 * 359.72749 * 17 15 12 19 19 Si 1.86796 * 119.99799 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46969 * 60.00679 * 19 17 15 21 21 H 1.48504 * 109.47271 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47511 * 300.00480 * 19 17 15 23 23 N 1.36452 * 126.47671 * 170.98698 * 8 6 5 24 24 C 1.46505 * 127.13540 * 359.97438 * 23 8 6 25 25 C 1.52993 * 109.47322 * 92.42312 * 24 23 8 26 26 O 1.42896 * 109.47523 * 185.56445 * 25 24 23 27 27 C 1.42897 * 114.00471 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46681 * 60.00260 * 1 2 3 29 29 H 1.08999 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 300.00268 * 1 2 3 31 31 H 1.09001 * 109.47014 * 59.99828 * 3 2 1 32 32 H 1.08999 * 109.46953 * 299.99771 * 3 2 1 33 33 H 1.08998 * 109.47002 * 59.99347 * 4 3 2 34 34 H 1.09000 * 109.46863 * 300.00250 * 4 3 2 35 35 H 1.08998 * 109.47863 * 59.99726 * 5 4 3 36 36 H 1.09008 * 109.47335 * 299.99438 * 5 4 3 37 37 H 1.09011 * 109.47283 * 193.25694 * 7 6 5 38 38 H 1.08999 * 109.47487 * 313.25762 * 7 6 5 39 39 H 1.09006 * 109.47199 * 73.26133 * 7 6 5 40 40 H 1.09007 * 109.46637 * 169.61276 * 13 12 11 41 41 H 1.08998 * 109.47283 * 289.60424 * 13 12 11 42 42 H 1.08998 * 109.47346 * 49.61262 * 13 12 11 43 43 H 1.09000 * 109.47163 * 304.66601 * 14 12 11 44 44 H 1.09001 * 109.47209 * 64.66240 * 14 12 11 45 45 H 1.08994 * 109.47055 * 184.66403 * 14 12 11 46 46 H 0.97006 * 119.99729 * 179.97438 * 18 17 15 47 47 H 1.09006 * 109.46659 * 212.42372 * 24 23 8 48 48 H 1.08999 * 109.46897 * 332.42319 * 24 23 8 49 49 H 1.08999 * 109.47227 * 305.56775 * 25 24 23 50 50 H 1.09004 * 109.47225 * 65.55991 * 25 24 23 51 51 H 1.09006 * 109.46624 * 300.00196 * 27 26 25 52 52 H 1.08997 * 109.47393 * 59.99488 * 27 26 25 53 53 H 1.08999 * 109.47149 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1579 2.5821 0.0013 6 7 5.6223 2.4662 0.0013 7 6 6.1032 1.8699 -1.2522 8 6 6.2181 3.6969 0.2265 9 7 5.6157 4.8625 0.2498 10 7 6.4718 5.7917 0.4855 11 6 7.6611 5.2784 0.6259 12 6 8.9327 6.0354 0.9109 13 6 9.9834 5.6828 -0.1439 14 6 9.4539 5.6532 2.2976 15 6 8.6559 7.5163 0.8688 16 1 7.6589 7.8734 0.6573 17 6 9.6754 8.4149 1.1013 18 7 10.8881 7.9798 1.3651 19 14 9.3325 10.2504 1.0484 20 1 8.3120 10.5930 2.0715 21 1 10.5854 10.9964 1.3293 22 1 8.8275 10.6211 -0.2980 23 7 7.5428 3.9263 0.4600 24 6 8.6152 2.9302 0.5235 25 6 9.2524 2.7780 -0.8590 26 8 10.2087 1.7166 -0.8286 27 6 10.8659 1.4903 -2.0771 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8575 0.6434 -0.8890 34 1 3.8567 0.6437 0.8908 35 1 3.8359 3.1230 0.8912 36 1 3.8367 3.1233 -0.8888 37 1 7.1476 1.5790 -1.1390 38 1 5.5046 0.9904 -1.4893 39 1 6.0143 2.5981 -2.0585 40 1 10.8326 6.3599 -0.0513 41 1 10.3189 4.6566 0.0063 42 1 9.5473 5.7807 -1.1381 43 1 8.6744 5.8273 3.0394 44 1 9.7321 4.5994 2.3035 45 1 10.3264 6.2607 2.5380 46 1 11.6054 8.6122 1.5283 47 1 9.3712 3.2554 1.2383 48 1 8.2030 1.9724 0.8410 49 1 8.4791 2.5494 -1.5924 50 1 9.7503 3.7078 -1.1340 51 1 10.1262 1.2352 -2.8360 52 1 11.3974 2.3935 -2.3769 53 1 11.5750 0.6693 -1.9708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342902306.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:21 Heat of formation + Delta-G solvation = -8.105724 kcal Electronic energy + Delta-G solvation = -31640.813659 eV Core-core repulsion = 27549.792661 eV Total energy + Delta-G solvation = -4091.020998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.97676 -39.44520 -39.19019 -38.51623 -37.50890 -35.99911 -33.64578 -32.90782 -31.02671 -30.24111 -28.33991 -27.84193 -27.50803 -27.11108 -26.91344 -25.36621 -24.58279 -23.47327 -22.49202 -21.43160 -20.78053 -18.59513 -18.08756 -17.61160 -17.47763 -17.27944 -17.06347 -17.03320 -16.79196 -16.52631 -16.11380 -15.70273 -15.57025 -15.45470 -15.10741 -14.80988 -14.56548 -14.39716 -13.76362 -13.47001 -13.35072 -13.22405 -13.12808 -12.95916 -12.92047 -12.73634 -12.66082 -12.64749 -12.41503 -12.26822 -12.20084 -12.07751 -12.00115 -11.87306 -11.82376 -11.79283 -11.46197 -11.16852 -10.76513 -10.65969 -10.61074 -10.56026 -10.31703 -9.24857 -8.03888 -6.15927 0.85556 1.19255 1.45879 1.46607 1.55237 1.96494 2.34968 2.48051 2.84678 3.05219 3.21272 3.51755 3.70550 3.80206 3.85540 3.91271 4.06446 4.15354 4.18736 4.26458 4.28133 4.34010 4.38949 4.47754 4.50650 4.53125 4.54343 4.55714 4.58382 4.61765 4.66824 4.75488 4.77246 4.82193 4.85240 4.87291 4.93370 4.96092 5.04839 5.14879 5.22835 5.25433 5.46394 5.55064 5.62525 5.78018 5.97986 6.00631 6.08537 6.21701 6.26948 6.39803 6.87586 7.49819 7.94917 8.96366 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.003155 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.354965 B = 8872.433850 C =10886.894949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.063 3.937 4 C -0.103 4.103 5 C 0.080 3.920 6 N -0.448 5.448 7 C 0.012 3.988 8 C 0.340 3.660 9 N -0.360 5.360 10 N -0.327 5.327 11 C 0.228 3.772 12 C 0.143 3.857 13 C -0.127 4.127 14 C -0.123 4.123 15 C -0.513 4.513 16 H 0.051 0.949 17 C 0.031 3.969 18 N -0.900 5.900 19 Si 0.947 3.053 20 H -0.281 1.281 21 H -0.277 1.277 22 H -0.280 1.280 23 N -0.474 5.474 24 C 0.109 3.891 25 C 0.037 3.963 26 O -0.396 6.396 27 C 0.025 3.975 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.031 0.969 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.019 0.981 43 H 0.016 0.984 44 H 0.039 0.961 45 H 0.083 0.917 46 H 0.264 0.736 47 H 0.104 0.896 48 H 0.120 0.880 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.055 0.945 52 H 0.043 0.957 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -19.360 -6.564 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.014 4.014 4 C -0.141 4.141 5 C -0.047 4.047 6 N -0.173 5.173 7 C -0.135 4.135 8 C -0.017 4.017 9 N -0.204 5.204 10 N -0.164 5.164 11 C -0.041 4.041 12 C 0.140 3.860 13 C -0.185 4.185 14 C -0.182 4.182 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.169 4.169 18 N -0.539 5.539 19 Si 0.774 3.226 20 H -0.207 1.207 21 H -0.202 1.202 22 H -0.206 1.206 23 N -0.169 5.169 24 C -0.013 4.013 25 C -0.040 4.040 26 O -0.314 6.314 27 C -0.071 4.071 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.138 0.862 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.073 0.927 52 H 0.061 0.939 53 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.811 -18.874 -6.068 21.695 hybrid contribution 0.345 1.327 -0.605 1.499 sum -8.466 -17.546 -6.673 20.593 Atomic orbital electron populations 1.22927 0.79492 1.03860 1.00803 1.87807 1.21433 1.28422 1.95625 1.22422 0.93305 0.84535 1.01119 1.21396 0.93085 0.95091 1.04528 1.21860 0.82484 0.97803 1.02592 1.58728 1.08572 1.13973 1.35998 1.22955 1.03174 1.00376 0.86969 1.22777 0.82587 0.92649 1.03689 1.74460 1.26403 0.95572 1.23932 1.73972 0.98585 1.23816 1.19980 1.25822 0.98713 0.79647 0.99934 1.16828 0.83326 0.92088 0.93719 1.22010 1.00519 1.00030 0.95923 1.21789 1.01554 0.98693 0.96119 1.21132 0.95652 0.90259 1.48095 0.93095 1.25355 0.94929 1.01820 0.94776 1.69834 1.00752 1.34958 1.48357 0.85789 0.77288 0.81324 0.78215 1.20732 1.20243 1.20571 1.46111 1.07481 1.08080 1.55258 1.21775 0.88809 0.91960 0.98799 1.23155 0.92630 0.91965 0.96246 1.87768 1.55815 1.52813 1.35025 1.23011 0.97227 1.02056 0.84815 0.93183 0.88347 0.93452 0.92844 0.92287 0.89570 0.90360 0.90957 0.93071 0.89820 0.86377 0.95037 0.90249 0.93038 0.96230 0.96493 0.94260 0.89843 0.92662 0.87838 0.86172 0.91889 0.91763 0.92685 0.93876 0.87254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.76 10.70 -148.98 -1.59 -9.35 16 3 C 0.06 1.08 5.94 71.98 0.43 1.51 16 4 C -0.10 -1.84 5.54 30.59 0.17 -1.67 16 5 C 0.08 1.90 4.38 86.30 0.38 2.28 16 6 N -0.45 -12.05 4.78 -730.92 -3.50 -15.54 16 7 C 0.01 0.24 8.84 127.69 1.13 1.37 16 8 C 0.34 12.39 6.98 260.11 1.82 14.21 16 9 N -0.36 -15.95 11.28 -58.00 -0.65 -16.60 16 10 N -0.33 -16.55 11.00 -49.53 -0.54 -17.10 16 11 C 0.23 10.50 6.32 137.64 0.87 11.37 16 12 C 0.14 6.90 0.50 -53.67 -0.03 6.88 16 13 C -0.13 -5.59 6.82 71.98 0.49 -5.10 16 14 C -0.12 -5.68 8.19 71.98 0.59 -5.09 16 15 C -0.51 -28.27 7.91 25.60 0.20 -28.07 16 16 H 0.05 3.02 6.95 -2.91 -0.02 3.00 16 17 C 0.03 1.63 5.10 84.65 0.43 2.06 16 18 N -0.90 -47.33 9.31 21.45 0.20 -47.13 16 19 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 N -0.47 -17.57 2.81 -514.84 -1.45 -19.02 16 24 C 0.11 3.21 4.81 86.38 0.42 3.62 16 25 C 0.04 0.99 5.31 71.98 0.38 1.37 16 26 O -0.40 -9.44 10.70 -148.98 -1.59 -11.04 16 27 C 0.02 0.43 11.01 113.37 1.25 1.67 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 1.32 6.32 -2.39 -0.02 1.31 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 2.00 7.90 -2.39 -0.02 1.98 16 36 H 0.05 1.25 8.12 -2.38 -0.02 1.23 16 37 H 0.08 1.65 4.69 -2.38 -0.01 1.64 16 38 H 0.12 1.69 6.00 -2.39 -0.01 1.67 16 39 H 0.03 0.71 8.06 -2.38 -0.02 0.69 16 40 H 0.08 3.87 5.88 -2.38 -0.01 3.86 16 41 H 0.05 1.94 4.40 -2.39 -0.01 1.93 16 42 H 0.02 0.84 7.83 -2.39 -0.02 0.82 16 43 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.04 1.54 5.75 -2.39 -0.01 1.53 16 45 H 0.08 4.16 5.95 -2.39 -0.01 4.14 16 46 H 0.26 13.32 8.31 -92.70 -0.77 12.55 16 47 H 0.10 3.21 4.98 -2.38 -0.01 3.20 16 48 H 0.12 3.03 7.94 -2.39 -0.02 3.01 16 49 H 0.06 1.52 5.69 -2.39 -0.01 1.51 16 50 H 0.06 1.95 4.59 -2.39 -0.01 1.94 16 51 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.00 400.89 3.58 -63.43 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.91 Total: 18.38 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 9.77 Total: 7.97 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -5.94 Total: -115.39 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -3.19 Total: -20.39 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.00 3.58 -63.43 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342902306.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.321 kcal (2) G-P(sol) polarization free energy of solvation -67.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds