Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00016 * 2 1 4 4 C 1.53004 * 109.47018 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47006 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47113 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99915 * 66.04262 * 6 5 4 8 8 C 1.38579 * 111.00169 * 189.99949 * 6 5 4 9 9 N 1.31220 * 126.47317 * 340.83937 * 8 6 5 10 10 N 1.28526 * 109.86197 * 179.97438 * 9 8 6 11 11 C 1.30299 * 110.05237 * 359.97438 * 10 9 8 12 12 C 1.50695 * 126.34642 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47153 * 276.28555 * 12 11 10 14 14 H 1.08994 * 109.47030 * 56.70847 * 13 12 11 15 15 O 1.42895 * 109.46803 * 296.70923 * 13 12 11 16 16 C 1.50703 * 109.47037 * 176.71009 * 13 12 11 17 17 H 1.07994 * 119.99898 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99716 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00189 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99688 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47275 * 60.00543 * 20 18 16 22 22 H 1.48502 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47300 * 300.00143 * 20 18 16 24 24 N 1.36446 * 126.47082 * 160.81774 * 8 6 5 25 25 C 1.46497 * 127.14298 * 359.97438 * 24 8 6 26 26 C 1.53005 * 109.47085 * 265.12984 * 25 24 8 27 27 C 1.52993 * 109.47590 * 65.00540 * 26 25 24 28 28 C 1.53001 * 109.47183 * 185.00705 * 26 25 24 29 29 H 1.09001 * 109.46725 * 300.00432 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99426 * 1 2 3 31 31 H 1.08999 * 109.47510 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47122 * 60.00164 * 3 2 1 33 33 H 1.09006 * 109.47050 * 299.99932 * 3 2 1 34 34 H 1.08994 * 109.46941 * 59.99688 * 4 3 2 35 35 H 1.08997 * 109.46852 * 299.99892 * 4 3 2 36 36 H 1.08997 * 109.47196 * 59.99675 * 5 4 3 37 37 H 1.08997 * 109.47160 * 299.99621 * 5 4 3 38 38 H 1.09003 * 109.47108 * 178.52980 * 7 6 5 39 39 H 1.08996 * 109.47536 * 298.54021 * 7 6 5 40 40 H 1.09008 * 109.46829 * 58.53734 * 7 6 5 41 41 H 1.09004 * 109.47297 * 36.28416 * 12 11 10 42 42 H 1.09006 * 109.47494 * 156.28689 * 12 11 10 43 43 H 0.96695 * 114.00591 * 299.39769 * 15 13 12 44 44 H 0.97001 * 120.00166 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.46999 * 25.12136 * 25 24 8 46 46 H 1.08996 * 109.47644 * 145.12766 * 25 24 8 47 47 H 1.09006 * 109.46622 * 305.00125 * 26 25 24 48 48 H 1.08999 * 109.47357 * 54.09907 * 27 26 25 49 49 H 1.08991 * 109.47450 * 174.10635 * 27 26 25 50 50 H 1.09003 * 109.47174 * 294.10535 * 27 26 25 51 51 H 1.09002 * 109.47305 * 59.99784 * 28 26 25 52 52 H 1.08996 * 109.47389 * 179.97438 * 28 26 25 53 53 H 1.08995 * 109.46939 * 299.99760 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1031 1.8702 -1.2535 8 6 6.2179 3.6971 0.2252 9 7 5.6581 4.8741 0.0731 10 7 6.4991 5.7993 0.3709 11 6 7.6357 5.2719 0.7282 12 6 8.8739 6.0199 1.1505 13 6 9.6617 6.4441 -0.0907 14 1 9.0222 7.0419 -0.7401 15 8 10.1025 5.2817 -0.7953 16 6 10.8567 7.2612 0.3278 17 1 11.0367 7.4579 1.3743 18 6 11.7210 7.7568 -0.6254 19 7 11.5021 7.5169 -1.8998 20 14 13.2019 8.7702 -0.1066 21 1 14.0730 7.9565 0.7789 22 1 13.9665 9.1819 -1.3113 23 1 12.7433 9.9785 0.6248 24 7 7.4972 3.9139 0.6474 25 6 8.5114 2.9018 0.9527 26 6 8.4992 2.6040 2.4534 27 6 7.1625 1.9654 2.8359 28 6 9.6394 1.6415 2.7917 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8359 3.1237 -0.8895 38 1 7.1918 1.8199 -1.2378 39 1 5.6943 0.8652 -1.3583 40 1 5.7798 2.4833 -2.0949 41 1 8.5877 6.9047 1.7191 42 1 9.4946 5.3739 1.7715 43 1 10.6846 4.7066 -0.2802 44 1 12.1099 7.8658 -2.5704 45 1 8.2916 1.9887 0.3993 46 1 9.4944 3.2738 0.6641 47 1 8.6306 3.5325 3.0091 48 1 6.9824 1.0944 2.2058 49 1 7.1926 1.6579 3.8810 50 1 6.3600 2.6892 2.6930 51 1 10.5918 2.0964 2.5192 52 1 9.6310 1.4297 3.8608 53 1 9.5081 0.7131 2.2360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343578168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -25.718580 kcal Electronic energy + Delta-G solvation = -31354.480506 eV Core-core repulsion = 27262.695757 eV Total energy + Delta-G solvation = -4091.784749 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58344 -38.55098 -37.58474 -36.94350 -36.01035 -33.16156 -32.64051 -32.18467 -31.06586 -28.41195 -27.58965 -27.23143 -26.81039 -26.18585 -25.23129 -24.35473 -22.06859 -21.48091 -20.75950 -20.28363 -19.57330 -17.34542 -16.87860 -16.76343 -16.58870 -16.16767 -15.88984 -15.25779 -14.99826 -14.79607 -14.67987 -14.56423 -14.23368 -13.94753 -13.77306 -13.66719 -13.09756 -13.06328 -12.72631 -12.53925 -12.44394 -12.22816 -12.08979 -12.07708 -11.69630 -11.54718 -11.39186 -11.34882 -11.22361 -11.06990 -11.00276 -10.91677 -10.87694 -10.84959 -10.75182 -10.17728 -10.13423 -9.98068 -9.67420 -9.45767 -9.06171 -8.63577 -8.44119 -7.89438 -6.06150 -4.25998 2.18650 2.53337 3.25952 3.30149 3.32074 3.34542 3.37271 3.90541 4.34034 4.60602 4.64974 4.71230 4.77578 4.85909 4.86889 4.99858 5.04838 5.07601 5.11085 5.15809 5.18657 5.19797 5.22210 5.32097 5.34919 5.40031 5.51203 5.53225 5.57800 5.61618 5.64875 5.75074 5.80225 5.82572 5.85037 5.98371 6.02154 6.10754 6.17349 6.26254 6.27550 6.35372 6.41253 6.65977 6.70338 6.83107 6.95965 7.51166 7.65343 7.77446 8.06729 8.75787 9.23129 9.26249 9.50079 10.97847 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002559 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.204378 B =10940.176325 C =11749.151437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.063 3.937 4 C -0.116 4.116 5 C 0.077 3.923 6 N -0.453 5.453 7 C 0.022 3.978 8 C 0.332 3.668 9 N -0.324 5.324 10 N -0.299 5.299 11 C 0.223 3.777 12 C -0.063 4.063 13 C 0.239 3.761 14 H 0.065 0.935 15 O -0.562 6.562 16 C -0.574 4.574 17 H 0.059 0.941 18 C 0.081 3.919 19 N -0.856 5.856 20 Si 0.892 3.108 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 N -0.462 5.462 25 C 0.117 3.883 26 C -0.111 4.111 27 C -0.138 4.138 28 C -0.143 4.143 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.339 0.661 44 H 0.262 0.738 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.059 0.941 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 -17.476 6.590 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.014 4.014 4 C -0.154 4.154 5 C -0.051 4.051 6 N -0.177 5.177 7 C -0.126 4.126 8 C -0.025 4.025 9 N -0.168 5.168 10 N -0.138 5.138 11 C -0.044 4.044 12 C -0.104 4.104 13 C 0.180 3.820 14 H 0.082 0.918 15 O -0.365 6.365 16 C -0.612 4.612 17 H 0.077 0.923 18 C -0.126 4.126 19 N -0.492 5.492 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 N -0.155 5.155 25 C -0.007 4.007 26 C -0.130 4.130 27 C -0.196 4.196 28 C -0.201 4.201 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.182 0.818 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.080 0.920 52 H 0.078 0.922 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.341 -16.630 5.965 22.756 hybrid contribution 1.722 0.116 0.343 1.760 sum -12.619 -16.514 6.308 21.720 Atomic orbital electron populations 1.22737 0.80958 1.02699 1.00075 1.87853 1.19751 1.28120 1.95469 1.22444 0.93835 0.84557 1.00576 1.21503 0.92683 0.97036 1.04130 1.21858 0.83661 0.96272 1.03277 1.58610 1.07556 1.16441 1.35068 1.22597 1.01420 0.99993 0.88555 1.22200 0.84531 0.91889 1.03846 1.74488 1.25706 0.95076 1.21548 1.73978 0.98756 1.23443 1.17618 1.25206 0.98476 0.79526 1.01236 1.21203 0.88704 0.98232 1.02239 1.19403 0.92137 0.83864 0.86587 0.91763 1.86649 1.67802 1.37026 1.44976 1.21532 1.10529 1.35762 0.93404 0.92319 1.25039 0.97769 0.95030 0.94791 1.70073 1.36562 1.42620 0.99902 0.86692 0.82610 0.80774 0.78038 1.20136 1.21224 1.20018 1.46075 1.11008 1.07751 1.50640 1.22000 0.91416 0.90734 0.96505 1.21491 0.96749 1.00064 0.94733 1.21758 0.96134 1.00990 1.00694 1.21760 0.97697 0.98940 1.01728 0.94028 0.94040 0.89661 0.92997 0.93083 0.90787 0.90134 0.89742 0.92642 0.91005 0.89645 0.93968 0.88700 0.91117 0.81796 0.92825 0.88992 0.88285 0.90606 0.92038 0.93053 0.92760 0.91995 0.92161 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.82 10.70 -35.23 -0.38 -4.20 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 C -0.12 -1.04 5.51 -26.73 -0.15 -1.18 16 5 C 0.08 0.86 4.38 -3.83 -0.02 0.85 16 6 N -0.45 -5.71 4.75 -182.38 -0.87 -6.57 16 7 C 0.02 0.24 9.09 60.07 0.55 0.79 16 8 C 0.33 5.49 5.75 -318.88 -1.83 3.66 16 9 N -0.32 -6.45 11.47 30.31 0.35 -6.10 16 10 N -0.30 -6.55 12.18 32.99 0.40 -6.15 16 11 C 0.22 4.40 7.05 -154.01 -1.09 3.31 16 12 C -0.06 -1.26 5.20 -27.88 -0.15 -1.40 16 13 C 0.24 5.84 2.83 -27.88 -0.08 5.76 16 14 H 0.06 1.84 8.14 -51.93 -0.42 1.42 16 15 O -0.56 -13.57 12.10 -35.23 -0.43 -13.99 16 16 C -0.57 -15.05 8.76 -34.44 -0.30 -15.35 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.08 2.19 5.40 -17.82 -0.10 2.09 16 19 N -0.86 -24.89 12.84 55.43 0.71 -24.17 16 20 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 N -0.46 -7.57 2.54 -114.08 -0.29 -7.86 16 25 C 0.12 1.49 5.10 -4.04 -0.02 1.47 16 26 C -0.11 -1.23 3.13 -90.62 -0.28 -1.51 16 27 C -0.14 -1.50 8.81 37.15 0.33 -1.17 16 28 C -0.14 -1.27 9.19 37.16 0.34 -0.93 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 37 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.07 0.82 6.56 -51.93 -0.34 0.48 16 39 H 0.08 0.72 6.54 -51.93 -0.34 0.38 16 40 H 0.04 0.52 8.13 -51.92 -0.42 0.09 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 42 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 43 H 0.34 7.00 8.00 45.56 0.36 7.36 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 1.05 6.46 -51.93 -0.34 0.71 16 46 H 0.10 1.31 6.56 -51.93 -0.34 0.97 16 47 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.71 7.14 -51.93 -0.37 0.34 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 53 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 424.35 15.07 6.39 6.39 Total: -1.00 -32.94 424.35 -9.41 -42.35 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.82 Total: 6.25 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.46 Total: -1.53 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.30 Total: -50.87 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.80 Total: -18.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -32.94 -9.41 -42.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343578168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.627 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds