Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00016 * 2 1 4 4 C 1.53004 * 109.47018 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47006 * 180.02562 * 4 3 2 6 6 N 1.46896 * 109.47113 * 179.97438 * 5 4 3 7 7 C 1.46901 * 110.99915 * 66.04262 * 6 5 4 8 8 C 1.38579 * 111.00169 * 189.99949 * 6 5 4 9 9 N 1.31220 * 126.47317 * 340.83937 * 8 6 5 10 10 N 1.28526 * 109.86197 * 179.97438 * 9 8 6 11 11 C 1.30299 * 110.05237 * 359.97438 * 10 9 8 12 12 C 1.50695 * 126.34642 * 179.97438 * 11 10 9 13 13 C 1.53009 * 109.47153 * 276.28555 * 12 11 10 14 14 H 1.08994 * 109.47030 * 56.70847 * 13 12 11 15 15 O 1.42895 * 109.46803 * 296.70923 * 13 12 11 16 16 C 1.50703 * 109.47037 * 176.71009 * 13 12 11 17 17 H 1.07994 * 119.99898 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99716 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00189 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99688 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47275 * 60.00543 * 20 18 16 22 22 H 1.48502 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47300 * 300.00143 * 20 18 16 24 24 N 1.36446 * 126.47082 * 160.81774 * 8 6 5 25 25 C 1.46497 * 127.14298 * 359.97438 * 24 8 6 26 26 C 1.53005 * 109.47085 * 265.12984 * 25 24 8 27 27 C 1.52993 * 109.47590 * 65.00540 * 26 25 24 28 28 C 1.53001 * 109.47183 * 185.00705 * 26 25 24 29 29 H 1.09001 * 109.46725 * 300.00432 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99426 * 1 2 3 31 31 H 1.08999 * 109.47510 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47122 * 60.00164 * 3 2 1 33 33 H 1.09006 * 109.47050 * 299.99932 * 3 2 1 34 34 H 1.08994 * 109.46941 * 59.99688 * 4 3 2 35 35 H 1.08997 * 109.46852 * 299.99892 * 4 3 2 36 36 H 1.08997 * 109.47196 * 59.99675 * 5 4 3 37 37 H 1.08997 * 109.47160 * 299.99621 * 5 4 3 38 38 H 1.09003 * 109.47108 * 178.52980 * 7 6 5 39 39 H 1.08996 * 109.47536 * 298.54021 * 7 6 5 40 40 H 1.09008 * 109.46829 * 58.53734 * 7 6 5 41 41 H 1.09004 * 109.47297 * 36.28416 * 12 11 10 42 42 H 1.09006 * 109.47494 * 156.28689 * 12 11 10 43 43 H 0.96695 * 114.00591 * 299.39769 * 15 13 12 44 44 H 0.97001 * 120.00166 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.46999 * 25.12136 * 25 24 8 46 46 H 1.08996 * 109.47644 * 145.12766 * 25 24 8 47 47 H 1.09006 * 109.46622 * 305.00125 * 26 25 24 48 48 H 1.08999 * 109.47357 * 54.09907 * 27 26 25 49 49 H 1.08991 * 109.47450 * 174.10635 * 27 26 25 50 50 H 1.09003 * 109.47174 * 294.10535 * 27 26 25 51 51 H 1.09002 * 109.47305 * 59.99784 * 28 26 25 52 52 H 1.08996 * 109.47389 * 179.97438 * 28 26 25 53 53 H 1.08995 * 109.46939 * 299.99760 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6222 2.4663 0.0000 7 6 6.1031 1.8702 -1.2535 8 6 6.2179 3.6971 0.2252 9 7 5.6581 4.8741 0.0731 10 7 6.4991 5.7993 0.3709 11 6 7.6357 5.2719 0.7282 12 6 8.8739 6.0199 1.1505 13 6 9.6617 6.4441 -0.0907 14 1 9.0222 7.0419 -0.7401 15 8 10.1025 5.2817 -0.7953 16 6 10.8567 7.2612 0.3278 17 1 11.0367 7.4579 1.3743 18 6 11.7210 7.7568 -0.6254 19 7 11.5021 7.5169 -1.8998 20 14 13.2019 8.7702 -0.1066 21 1 14.0730 7.9565 0.7789 22 1 13.9665 9.1819 -1.3113 23 1 12.7433 9.9785 0.6248 24 7 7.4972 3.9139 0.6474 25 6 8.5114 2.9018 0.9527 26 6 8.4992 2.6040 2.4534 27 6 7.1625 1.9654 2.8359 28 6 9.6394 1.6415 2.7917 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6438 -0.8908 35 1 3.8574 0.6435 0.8891 36 1 3.8365 3.1227 0.8904 37 1 3.8359 3.1237 -0.8895 38 1 7.1918 1.8199 -1.2378 39 1 5.6943 0.8652 -1.3583 40 1 5.7798 2.4833 -2.0949 41 1 8.5877 6.9047 1.7191 42 1 9.4946 5.3739 1.7715 43 1 10.6846 4.7066 -0.2802 44 1 12.1099 7.8658 -2.5704 45 1 8.2916 1.9887 0.3993 46 1 9.4944 3.2738 0.6641 47 1 8.6306 3.5325 3.0091 48 1 6.9824 1.0944 2.2058 49 1 7.1926 1.6579 3.8810 50 1 6.3600 2.6892 2.6930 51 1 10.5918 2.0964 2.5192 52 1 9.6310 1.4297 3.8608 53 1 9.5081 0.7131 2.2360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343578168.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -47.167744 kcal Electronic energy + Delta-G solvation = -31355.410612 eV Core-core repulsion = 27262.695757 eV Total energy + Delta-G solvation = -4092.714854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.99175 -39.40282 -38.50148 -38.21023 -37.63838 -34.35219 -34.22775 -33.69569 -32.50881 -29.93755 -28.44166 -28.11193 -27.88255 -27.29025 -26.69371 -25.31907 -23.68943 -22.55737 -22.01564 -21.41047 -20.85975 -19.15312 -18.19351 -17.70546 -17.45455 -17.15546 -16.95458 -16.67917 -16.42679 -16.02711 -15.97572 -15.65605 -15.45478 -15.29530 -15.00111 -14.86301 -14.44449 -14.33164 -14.01022 -13.39386 -13.28200 -13.24959 -13.02755 -12.93983 -12.90910 -12.79292 -12.70835 -12.61683 -12.61133 -12.50339 -12.37062 -12.04704 -12.04509 -11.91698 -11.81078 -11.70861 -11.47782 -11.26168 -10.90326 -10.70928 -10.65182 -10.61532 -10.18099 -9.35025 -8.12822 -6.39494 0.82420 1.28878 1.43823 1.46142 1.53572 1.83303 2.40827 2.50075 2.99616 3.13480 3.47212 3.60710 3.78048 3.82809 3.89854 3.98845 4.09239 4.16369 4.18305 4.22892 4.27417 4.31549 4.42347 4.49849 4.52805 4.53606 4.55204 4.57088 4.62431 4.67864 4.69628 4.76371 4.85301 4.86956 4.87525 4.92239 4.97691 5.02155 5.08661 5.16572 5.19476 5.23519 5.42127 5.42668 5.53932 5.62797 5.65628 5.71462 6.02825 6.21454 6.25196 6.72186 7.32779 7.50889 7.79175 8.91528 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.017942 B = 0.002559 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.204378 B =10940.176325 C =11749.151437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.063 3.937 4 C -0.101 4.101 5 C 0.080 3.920 6 N -0.442 5.442 7 C 0.021 3.979 8 C 0.349 3.651 9 N -0.360 5.360 10 N -0.340 5.340 11 C 0.209 3.791 12 C -0.046 4.046 13 C 0.246 3.754 14 H 0.010 0.990 15 O -0.574 6.574 16 C -0.582 4.582 17 H 0.071 0.929 18 C 0.026 3.974 19 N -0.901 5.901 20 Si 0.962 3.038 21 H -0.260 1.260 22 H -0.290 1.290 23 H -0.271 1.271 24 N -0.455 5.455 25 C 0.109 3.891 26 C -0.105 4.105 27 C -0.131 4.131 28 C -0.138 4.138 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.028 0.972 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.355 0.645 44 H 0.260 0.740 45 H 0.111 0.889 46 H 0.096 0.904 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.025 0.975 51 H 0.061 0.939 52 H 0.070 0.930 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 -19.879 7.967 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.014 4.014 4 C -0.139 4.139 5 C -0.047 4.047 6 N -0.167 5.167 7 C -0.126 4.126 8 C -0.008 4.008 9 N -0.205 5.205 10 N -0.179 5.179 11 C -0.060 4.060 12 C -0.086 4.086 13 C 0.187 3.813 14 H 0.028 0.972 15 O -0.379 6.379 16 C -0.620 4.620 17 H 0.089 0.911 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.786 3.214 21 H -0.185 1.185 22 H -0.216 1.216 23 H -0.196 1.196 24 N -0.148 5.148 25 C -0.012 4.012 26 C -0.124 4.124 27 C -0.188 4.188 28 C -0.195 4.195 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.117 0.883 43 H 0.201 0.799 44 H 0.069 0.931 45 H 0.129 0.871 46 H 0.114 0.886 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.045 0.955 51 H 0.080 0.920 52 H 0.089 0.911 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.708 -19.061 7.370 24.608 hybrid contribution 1.420 0.754 -0.105 1.611 sum -12.289 -18.307 7.265 23.215 Atomic orbital electron populations 1.22924 0.79525 1.03854 1.00775 1.87808 1.21399 1.28434 1.95615 1.22431 0.93495 0.84517 1.00986 1.21358 0.92891 0.95116 1.04567 1.21857 0.82817 0.97777 1.02240 1.58839 1.08183 1.13852 1.35781 1.22717 1.01611 1.01285 0.86978 1.22613 0.84356 0.92436 1.01406 1.74386 1.26363 0.96111 1.23607 1.73863 1.00015 1.25209 1.18836 1.25007 0.97948 0.80999 1.02025 1.20868 0.88695 0.98830 1.00173 1.19037 0.91489 0.83675 0.87051 0.97232 1.86574 1.68429 1.37047 1.45827 1.21946 1.10644 1.35413 0.93950 0.91093 1.25926 1.00905 0.96209 0.94666 1.70232 1.37923 1.44423 1.01196 0.85576 0.78974 0.79219 0.77588 1.18483 1.21555 1.19558 1.46199 1.11565 1.07210 1.49799 1.22345 0.90259 0.90340 0.98259 1.21456 0.97944 1.00111 0.92913 1.21687 0.94902 1.00405 1.01811 1.21728 0.96451 0.98733 1.02622 0.93343 0.93342 0.88361 0.92709 0.92670 0.89904 0.89971 0.90989 0.93588 0.91047 0.86165 0.95315 0.89005 0.88339 0.79938 0.93074 0.87100 0.88608 0.92118 0.91069 0.91709 0.95531 0.91976 0.91125 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.54 16 2 O -0.41 -7.34 10.70 -148.98 -1.59 -8.93 16 3 C 0.06 1.00 5.94 71.98 0.43 1.43 16 4 C -0.10 -1.64 5.51 30.59 0.17 -1.47 16 5 C 0.08 1.76 4.38 86.30 0.38 2.14 16 6 N -0.44 -10.69 4.75 -730.94 -3.47 -14.16 16 7 C 0.02 0.43 9.09 127.69 1.16 1.59 16 8 C 0.35 11.60 5.75 260.11 1.50 13.10 16 9 N -0.36 -14.86 11.47 -58.01 -0.67 -15.53 16 10 N -0.34 -15.56 12.18 -49.53 -0.60 -16.16 16 11 C 0.21 8.46 7.05 137.63 0.97 9.43 16 12 C -0.05 -1.83 5.20 29.85 0.16 -1.67 16 13 C 0.25 12.37 2.83 29.85 0.08 12.46 16 14 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 15 O -0.57 -28.11 12.10 -148.98 -1.80 -29.91 16 16 C -0.58 -30.57 8.76 25.60 0.22 -30.34 16 17 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 18 C 0.03 1.39 5.40 84.65 0.46 1.85 16 19 N -0.90 -53.49 12.84 21.45 0.28 -53.21 16 20 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 N -0.46 -14.87 2.54 -514.85 -1.31 -16.18 16 25 C 0.11 2.63 5.10 86.38 0.44 3.07 16 26 C -0.10 -2.10 3.13 -10.79 -0.03 -2.14 16 27 C -0.13 -2.56 8.81 71.98 0.63 -1.93 16 28 C -0.14 -2.02 9.19 71.98 0.66 -1.36 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 34 H 0.08 1.21 6.59 -2.39 -0.02 1.20 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.07 1.77 8.03 -2.39 -0.02 1.75 16 37 H 0.05 1.11 8.11 -2.39 -0.02 1.09 16 38 H 0.07 1.48 6.56 -2.39 -0.02 1.47 16 39 H 0.12 1.65 6.54 -2.39 -0.02 1.63 16 40 H 0.03 0.68 8.13 -2.38 -0.02 0.66 16 41 H 0.09 3.70 8.14 -2.38 -0.02 3.68 16 42 H 0.10 3.33 7.68 -2.38 -0.02 3.31 16 43 H 0.36 14.52 8.00 -74.06 -0.59 13.93 16 44 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.11 2.25 6.46 -2.39 -0.02 2.23 16 46 H 0.10 2.39 6.56 -2.39 -0.02 2.38 16 47 H 0.06 1.42 8.07 -2.38 -0.02 1.40 16 48 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.03 0.66 7.14 -2.39 -0.02 0.64 16 51 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.67 424.35 1.61 -72.06 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.29 Total: 30.15 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 8.47 Total: 7.68 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -5.78 Total: -115.25 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -3.40 Total: -38.84 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.67 1.61 -72.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343578168.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.891 kcal (2) G-P(sol) polarization free energy of solvation -73.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds