Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99599 * 2 1 4 4 H 1.48508 * 109.47212 * 269.99886 * 3 2 1 5 5 H 1.48500 * 109.47398 * 30.00198 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00251 * 3 2 1 7 7 C 1.38806 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99933 * 163.07175 * 7 2 1 9 9 N 1.36937 * 120.00539 * 343.06582 * 7 2 1 10 10 C 1.46933 * 120.62577 * 331.85440 * 9 7 2 11 11 C 1.53194 * 108.77438 * 233.57881 * 10 9 7 12 12 C 1.53041 * 109.31573 * 305.36980 * 11 10 9 13 13 N 1.46492 * 109.46257 * 181.37996 * 12 11 10 14 14 C 1.34777 * 120.00427 * 154.96764 * 13 12 11 15 15 O 1.21588 * 119.99336 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00304 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99843 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47047 * 180.02562 * 17 16 14 19 19 N 1.46902 * 109.47149 * 180.02562 * 18 17 16 20 20 C 1.46839 * 111.00192 * 294.21353 * 19 18 17 21 21 C 1.53038 * 109.52580 * 174.16036 * 20 19 18 22 22 C 1.53113 * 109.27679 * 59.17637 * 21 20 19 23 23 O 1.42904 * 109.52020 * 182.44241 * 22 21 20 24 24 C 1.53119 * 109.16579 * 302.34992 * 22 21 20 25 25 C 1.46847 * 110.99783 * 170.00311 * 19 18 17 26 26 C 1.53042 * 109.52535 * 61.37012 * 12 11 10 27 27 C 1.46920 * 120.63287 * 151.82635 * 9 7 2 28 28 H 0.97004 * 120.00522 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.58471 * 113.79861 * 10 9 7 30 30 H 1.08997 * 109.70399 * 353.44114 * 10 9 7 31 31 H 1.08993 * 109.49996 * 185.41273 * 11 10 9 32 32 H 1.09010 * 109.49173 * 65.31871 * 11 10 9 33 33 H 1.08991 * 109.46148 * 301.35840 * 12 11 10 34 34 H 0.97007 * 119.99971 * 334.97496 * 13 12 11 35 35 H 0.96998 * 120.00307 * 0.02562 * 16 14 13 36 36 H 1.08999 * 109.47077 * 60.00658 * 17 16 14 37 37 H 1.08997 * 109.47644 * 300.00473 * 17 16 14 38 38 H 1.08997 * 109.47128 * 300.00597 * 18 17 16 39 39 H 1.09008 * 109.46614 * 60.00385 * 18 17 16 40 40 H 1.08996 * 109.46654 * 294.17553 * 20 19 18 41 41 H 1.09009 * 109.46524 * 54.14434 * 20 19 18 42 42 H 1.09005 * 109.49904 * 299.24161 * 21 20 19 43 43 H 1.09002 * 109.50539 * 179.12424 * 21 20 19 44 44 H 1.08998 * 109.57353 * 62.28774 * 22 21 20 45 45 H 0.96695 * 114.00517 * 299.68249 * 23 22 21 46 46 H 1.09006 * 109.49930 * 297.71240 * 24 22 21 47 47 H 1.08997 * 109.50652 * 177.59839 * 24 22 21 48 48 H 1.09002 * 109.46219 * 305.85631 * 25 19 18 49 49 H 1.08996 * 109.46360 * 65.83848 * 25 19 18 50 50 H 1.09004 * 109.50330 * 58.57898 * 26 12 11 51 51 H 1.08999 * 109.49805 * 178.68076 * 26 12 11 52 52 H 1.08997 * 109.59121 * 246.20678 * 27 9 7 53 53 H 1.08997 * 109.58478 * 6.49069 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2661 11 6 0.4974 -3.3208 2.4119 12 6 0.8120 -4.7021 1.8328 13 7 1.0397 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7302 15 8 0.4632 -7.3696 1.6450 16 7 1.0457 -7.8390 3.7363 17 6 0.8245 -9.2714 3.5226 18 6 1.1321 -10.0331 4.8134 19 7 0.9109 -11.4695 4.5989 20 6 -0.5084 -11.7520 4.3501 21 6 -0.6801 -13.2290 3.9883 22 6 -0.1624 -14.0950 5.1400 23 8 -0.2678 -15.4751 4.7845 24 6 1.3039 -13.7469 5.4109 25 6 1.4181 -12.2548 5.7314 26 6 2.0675 -4.6177 0.9618 27 6 1.8138 -3.6527 -0.2007 28 1 -0.4851 0.8400 0.0004 29 1 -0.6771 -2.6411 0.7347 30 1 0.0967 -1.3358 1.6677 31 1 -0.3831 -3.3862 3.0510 32 1 1.3472 -2.9696 2.9973 33 1 -0.0280 -5.0417 1.2270 34 1 1.3372 -5.3286 3.7923 35 1 1.3432 -7.5181 4.6020 36 1 1.4796 -9.6254 2.7266 37 1 -0.2146 -9.4405 3.2402 38 1 2.1711 -9.8641 5.0962 39 1 0.4767 -9.6790 5.6092 40 1 -1.0859 -11.5283 5.2469 41 1 -0.8630 -11.1327 3.5261 42 1 -0.1138 -13.4503 3.0836 43 1 -1.7356 -13.4419 3.8189 44 1 -0.7536 -13.9034 6.0354 45 1 -1.1712 -15.7656 4.5988 46 1 1.9014 -13.9764 4.5285 47 1 1.6660 -14.3298 6.2577 48 1 2.4628 -12.0008 5.9106 49 1 0.8314 -12.0289 6.6217 50 1 2.9024 -4.2542 1.5610 51 1 2.3046 -5.6062 0.5685 52 1 1.0402 -4.0599 -0.8517 53 1 2.7332 -3.5124 -0.7692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355244245.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -87.855496 kcal Electronic energy + Delta-G solvation = -29677.673883 eV Core-core repulsion = 25583.194675 eV Total energy + Delta-G solvation = -4094.479208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21775 -40.32042 -39.11714 -37.69913 -36.12601 -35.72202 -33.96584 -33.05901 -31.92363 -31.75607 -31.13229 -28.98640 -26.80910 -25.01374 -24.24921 -23.93130 -23.58914 -22.44477 -21.83328 -21.04805 -20.82160 -19.39493 -18.58697 -18.27556 -17.63429 -16.98084 -16.85268 -16.64435 -16.11573 -15.79476 -15.65429 -15.50089 -15.36290 -15.27819 -15.00636 -14.87071 -14.75140 -14.44406 -14.22599 -14.01961 -13.83241 -13.20367 -13.19846 -12.99848 -12.85122 -12.63788 -12.59894 -12.50121 -12.23468 -12.20932 -12.11861 -12.07666 -12.00411 -11.85624 -11.55021 -11.39273 -11.29705 -11.20703 -10.77721 -10.54856 -10.29231 -9.71501 -9.35060 -8.69516 -7.86835 -5.32426 1.49186 1.50296 1.60447 1.65318 2.19385 2.53096 2.82953 3.27723 3.28968 3.43596 3.68142 3.72759 3.81030 3.89578 3.92643 4.07938 4.09962 4.16201 4.23696 4.36224 4.36774 4.45971 4.47936 4.53358 4.58626 4.66628 4.75585 4.83046 4.84186 4.86425 4.90414 4.96161 4.96810 5.04154 5.06090 5.08487 5.16670 5.17590 5.31032 5.33462 5.46856 5.49591 5.62100 5.65815 5.71660 6.02587 6.04716 6.09117 6.40050 6.86402 7.15558 7.16364 7.63757 7.85016 8.38270 9.20355 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.042652 B = 0.001545 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.319512 B =18118.166664 C =18220.679502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.725 5.725 14 C 0.700 3.300 15 O -0.638 6.638 16 N -0.731 5.731 17 C 0.146 3.854 18 C 0.057 3.943 19 N -0.550 5.550 20 C 0.052 3.948 21 C -0.145 4.145 22 C 0.103 3.897 23 O -0.587 6.587 24 C -0.111 4.111 25 C 0.064 3.936 26 C -0.123 4.123 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.007 1.007 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.411 0.589 35 H 0.413 0.587 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.393 0.607 46 H 0.062 0.938 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.067 0.933 51 H 0.056 0.944 52 H 0.006 0.994 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -26.382 18.837 32.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.076 3.924 13 N -0.380 5.380 14 C 0.399 3.601 15 O -0.520 6.520 16 N -0.388 5.388 17 C 0.021 3.979 18 C -0.071 4.071 19 N -0.276 5.276 20 C -0.076 4.076 21 C -0.183 4.183 22 C 0.045 3.955 23 O -0.395 6.395 24 C -0.149 4.149 25 C -0.064 4.064 26 C -0.164 4.164 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.247 0.753 35 H 0.249 0.751 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.243 0.757 46 H 0.081 0.919 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.066 0.934 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.024 0.976 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.991 -26.751 17.536 32.002 hybrid contribution -0.764 1.500 0.626 1.796 sum 0.227 -25.251 18.162 31.105 Atomic orbital electron populations 1.70187 1.06702 1.25951 1.55311 1.25813 0.96033 1.01515 1.01080 0.85259 0.78132 0.79422 0.77486 1.21415 1.21734 1.19352 1.19521 0.92894 0.85854 1.41200 0.91515 1.44340 1.35956 1.02137 1.50736 1.20573 0.87683 0.97770 0.88781 1.22251 1.01991 0.93505 0.98885 1.20475 0.96849 0.87763 0.87348 1.45100 1.72617 1.04242 1.16044 1.16129 0.78255 0.81625 0.84069 1.90908 1.55557 1.78820 1.26666 1.44781 1.73471 1.06471 1.14084 1.21041 1.00628 0.77949 0.98296 1.22112 1.03146 0.86864 0.94945 1.61742 1.18066 1.05809 1.41982 1.22130 0.87974 0.96574 1.00899 1.22283 1.02066 0.94494 0.99489 1.21893 0.97136 0.80701 0.95814 1.86482 1.35212 1.25984 1.91813 1.21549 0.95293 0.95466 1.02623 1.22056 1.01451 0.91946 0.90924 1.22180 0.97983 0.98414 0.97776 1.20967 0.97306 0.86025 0.93915 0.94017 0.98841 0.91764 0.90471 0.90986 0.92803 0.75313 0.75060 0.92880 0.92965 0.88478 0.92573 0.93612 0.90790 0.91865 0.89800 0.91932 0.75696 0.91898 0.90132 0.88929 0.93440 0.91473 0.92535 0.97645 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 11.19 21.65 0.24 -54.94 16 2 C -0.05 -2.73 4.92 84.86 0.42 -2.31 16 3 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 8 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -30.92 2.99 -699.08 -2.09 -33.02 16 10 C 0.18 8.53 5.30 86.36 0.46 8.99 16 11 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 12 C 0.18 6.23 2.42 45.02 0.11 6.34 16 13 N -0.73 -18.88 5.08 -457.71 -2.33 -21.21 16 14 C 0.70 19.98 8.53 179.06 1.53 21.50 16 15 O -0.64 -24.99 16.01 -3.99 -0.06 -25.06 16 16 N -0.73 -13.52 5.56 -478.54 -2.66 -16.18 16 17 C 0.15 2.64 5.60 86.38 0.48 3.12 16 18 C 0.06 0.63 5.07 86.30 0.44 1.07 16 19 N -0.55 -6.92 4.66 -896.35 -4.17 -11.09 16 20 C 0.05 0.64 5.29 86.33 0.46 1.09 16 21 C -0.15 -1.67 5.72 30.64 0.18 -1.50 16 22 C 0.10 1.14 3.54 30.67 0.11 1.25 16 23 O -0.59 -7.54 13.32 -148.98 -1.99 -9.52 16 24 C -0.11 -1.29 5.75 30.65 0.18 -1.11 16 25 C 0.06 0.60 5.46 86.33 0.47 1.07 16 26 C -0.12 -4.50 5.65 30.68 0.17 -4.33 16 27 C 0.14 6.37 6.52 86.37 0.56 6.94 16 28 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 29 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 30 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 34 H 0.41 7.60 8.62 -92.70 -0.80 6.81 16 35 H 0.41 4.48 8.49 -92.71 -0.79 3.69 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 38 H 0.10 0.83 7.99 -2.39 -0.02 0.81 16 39 H 0.06 0.48 8.12 -2.38 -0.02 0.46 16 40 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 1.08 6.21 -2.38 -0.01 1.07 16 42 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.39 1.85 9.09 -74.06 -0.67 1.18 16 46 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.09 0.72 8.01 -2.39 -0.02 0.70 16 49 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 51 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 53 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 Total: -1.00 -74.91 409.33 -5.84 -80.75 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -1.34 Total: 19.76 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 6.53 Total: 24.05 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -11.01 Total: -136.44 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -2.05 Total: -34.58 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -74.91 -5.84 -80.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355244245.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.105 kcal (2) G-P(sol) polarization free energy of solvation -74.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds