Wall clock time and date at job start Sat Apr 11 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50708 * 109.47009 * 2 1 4 4 N 1.30295 * 126.34594 * 270.15182 * 3 2 1 5 5 N 1.28529 * 110.05278 * 180.31018 * 4 3 2 6 6 C 1.31218 * 109.85868 * 359.72117 * 5 4 3 7 7 N 1.38577 * 126.47050 * 180.02562 * 6 5 4 8 8 C 1.46897 * 110.99804 * 108.13311 * 7 6 5 9 9 C 1.50701 * 109.46934 * 306.06682 * 8 7 6 10 10 H 1.08001 * 119.99528 * 3.25046 * 9 8 7 11 11 C 1.37879 * 120.00189 * 183.23990 * 9 8 7 12 12 N 1.31516 * 120.00073 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00133 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47223 * 90.00411 * 13 11 9 15 15 H 1.48497 * 109.47499 * 210.00660 * 13 11 9 16 16 H 1.48508 * 109.47315 * 330.00383 * 13 11 9 17 17 C 1.46890 * 111.00210 * 344.17530 * 7 6 5 18 18 C 1.53008 * 109.47218 * 196.61280 * 17 7 6 19 19 O 1.42900 * 109.47320 * 66.38851 * 18 17 7 20 20 C 1.42891 * 113.99845 * 180.02562 * 19 18 17 21 21 N 1.36459 * 107.05377 * 0.02562 * 6 5 4 22 22 C 1.46494 * 127.13525 * 180.02562 * 21 6 5 23 23 C 1.52997 * 109.47335 * 95.79315 * 22 21 6 24 24 C 1.53002 * 109.47107 * 184.33502 * 23 22 21 25 25 C 1.53007 * 109.47033 * 185.00062 * 24 23 22 26 26 C 1.52999 * 109.46971 * 304.99514 * 24 23 22 27 27 O 1.42893 * 109.47302 * 65.00067 * 24 23 22 28 28 H 1.08998 * 109.47517 * 60.00483 * 1 2 3 29 29 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47193 * 299.99950 * 1 2 3 31 31 H 1.09000 * 109.47633 * 240.00010 * 2 1 3 32 32 H 1.09005 * 109.47432 * 119.99871 * 2 1 3 33 33 H 1.09000 * 109.47720 * 66.06978 * 8 7 6 34 34 H 1.09003 * 109.47075 * 186.07685 * 8 7 6 35 35 H 0.96994 * 120.00435 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47449 * 316.61065 * 17 7 6 37 37 H 1.08997 * 109.47728 * 76.61428 * 17 7 6 38 38 H 1.09005 * 109.46836 * 186.38968 * 18 17 7 39 39 H 1.08999 * 109.46878 * 306.38537 * 18 17 7 40 40 H 1.09005 * 109.46942 * 299.99254 * 20 19 18 41 41 H 1.08993 * 109.47744 * 59.99881 * 20 19 18 42 42 H 1.09003 * 109.46980 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.47255 * 335.79452 * 22 21 6 44 44 H 1.09002 * 109.47256 * 215.79103 * 22 21 6 45 45 H 1.08996 * 109.47373 * 64.33454 * 23 22 21 46 46 H 1.09003 * 109.47028 * 304.33276 * 23 22 21 47 47 H 1.08999 * 109.47191 * 59.99645 * 25 24 23 48 48 H 1.08998 * 109.47429 * 179.97438 * 25 24 23 49 49 H 1.09006 * 109.47029 * 299.99740 * 25 24 23 50 50 H 1.08996 * 109.46954 * 60.00660 * 26 24 23 51 51 H 1.09003 * 109.47290 * 180.02562 * 26 24 23 52 52 H 1.08999 * 109.47320 * 300.00396 * 26 24 23 53 53 H 0.96699 * 114.00214 * 59.99998 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2870 2.1499 -1.0495 5 7 2.7053 3.3105 -0.6889 6 6 2.7344 3.3868 0.6207 7 7 3.1288 4.4813 1.3735 8 6 1.9742 5.1197 2.0194 9 6 0.9351 5.4490 0.9788 10 1 1.0915 5.1611 -0.0504 11 6 -0.2152 6.1176 1.3405 12 7 -0.4055 6.4683 2.5937 13 14 -1.5034 6.5251 0.0507 14 1 -2.4787 5.4094 -0.0447 15 1 -2.2131 7.7712 0.4363 16 1 -0.8426 6.7188 -1.2651 17 6 3.8718 5.4456 0.5514 18 6 4.6357 6.4098 1.4612 19 8 5.6522 5.6949 2.1666 20 6 6.4282 6.5075 3.0494 21 7 2.3029 2.1847 1.1013 22 6 2.1631 1.7924 2.5058 23 6 0.7167 2.0098 2.9546 24 6 0.5947 1.7030 4.4486 25 6 -0.8729 1.7991 4.8707 26 6 1.1127 0.2898 4.7230 27 8 1.3673 2.6466 5.1933 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5476 4.4389 2.7561 34 1 2.2955 6.0360 2.5146 35 1 -1.2145 6.9390 2.8481 36 1 4.5769 4.9122 -0.0863 37 1 3.1740 6.0076 -0.0693 38 1 5.0945 7.1927 0.8573 39 1 3.9455 6.8593 2.1752 40 1 6.9243 7.2926 2.4787 41 1 5.7751 6.9586 3.7963 42 1 7.1770 5.8910 3.5468 43 1 2.8291 2.3983 3.1203 44 1 2.4237 0.7398 2.6168 45 1 0.0585 1.3472 2.3927 46 1 0.4314 3.0458 2.7719 47 1 -1.4623 1.0794 4.3027 48 1 -0.9599 1.5802 5.9349 49 1 -1.2420 2.8060 4.6752 50 1 2.1581 0.2213 4.4223 51 1 1.0253 0.0710 5.7872 52 1 0.5233 -0.4299 4.1549 53 1 1.0938 3.5655 5.0674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001390953549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:44 Heat of formation + Delta-G solvation = -22.117990 kcal Electronic energy + Delta-G solvation = -33101.643863 eV Core-core repulsion = 29010.015247 eV Total energy + Delta-G solvation = -4091.628616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23304 -38.46555 -37.91822 -36.37775 -34.89685 -33.37296 -32.64793 -32.34804 -29.60512 -29.00651 -28.38022 -27.36024 -26.49260 -25.70726 -24.06009 -23.72352 -22.87498 -21.79687 -20.23035 -19.61947 -19.52054 -17.12847 -16.44993 -16.30792 -16.09475 -15.87964 -15.45687 -15.18576 -14.82522 -14.64385 -14.47001 -14.38121 -14.08273 -13.93975 -13.48610 -13.41586 -12.91945 -12.78448 -12.34528 -12.23178 -12.17803 -11.99246 -11.90774 -11.71726 -11.61822 -11.56870 -11.38102 -11.31882 -11.10795 -11.03387 -10.81168 -10.71385 -10.54258 -10.46022 -10.32309 -10.25999 -9.95051 -9.86726 -9.55105 -9.28627 -9.18424 -8.69067 -8.58623 -7.33123 -6.22172 -4.28809 2.53796 2.98884 3.20212 3.27424 3.35870 3.66344 4.23097 4.31248 4.35017 4.60662 4.73566 4.88116 4.92291 5.00050 5.09354 5.11913 5.15531 5.37030 5.45977 5.47318 5.49424 5.57663 5.61823 5.69609 5.72606 5.77301 5.78899 5.80415 5.85904 5.86828 5.88385 5.95429 5.97293 5.98416 6.08151 6.15640 6.25276 6.26865 6.37558 6.50345 6.56585 6.64035 6.80353 7.02076 7.25436 7.35335 7.52260 7.69859 7.75854 7.91454 7.98368 8.21633 8.82077 9.39367 9.58737 10.83368 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.006991 B = 0.005507 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4004.038971 B = 5083.237691 C = 5567.630524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 C 0.149 3.851 4 N -0.290 5.290 5 N -0.341 5.341 6 C 0.416 3.584 7 N -0.459 5.459 8 C 0.188 3.812 9 C -0.552 4.552 10 H 0.069 0.931 11 C 0.072 3.928 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.080 3.920 18 C 0.067 3.933 19 O -0.380 6.380 20 C 0.033 3.967 21 N -0.471 5.471 22 C 0.122 3.878 23 C -0.171 4.171 24 C 0.135 3.865 25 C -0.177 4.177 26 C -0.142 4.142 27 O -0.562 6.562 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.263 0.737 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.061 0.939 52 H 0.067 0.933 53 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.847 -9.405 5.007 11.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.065 4.065 3 C -0.119 4.119 4 N -0.129 5.129 5 N -0.185 5.185 6 C 0.060 3.940 7 N -0.183 5.183 8 C 0.064 3.936 9 C -0.591 4.591 10 H 0.087 0.913 11 C -0.131 4.131 12 N -0.528 5.528 13 Si 0.715 3.285 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.048 4.048 18 C -0.010 4.010 19 O -0.299 6.299 20 C -0.065 4.065 21 N -0.166 5.166 22 C -0.001 4.001 23 C -0.209 4.209 24 C 0.094 3.906 25 C -0.234 4.234 26 C -0.199 4.199 27 O -0.370 6.370 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.092 0.908 46 H 0.118 0.882 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.530 -9.773 4.242 11.577 hybrid contribution -1.910 1.178 0.122 2.248 sum 2.619 -8.595 4.364 9.989 Atomic orbital electron populations 1.21836 0.94242 1.01684 1.03030 1.19785 0.96154 0.87146 1.03365 1.24346 1.07129 0.97444 0.82944 1.73778 1.15340 0.99406 1.24422 1.74584 1.23651 1.12531 1.07752 1.22425 0.95772 0.86992 0.88849 1.59185 1.25194 1.05971 1.27919 1.20100 0.84482 0.94763 0.94234 1.21870 1.03644 1.37777 0.95836 0.91282 1.24854 0.97966 0.95062 0.95258 1.69911 1.27180 1.39663 1.16082 0.86642 0.81654 0.77814 0.82394 1.20730 1.21097 1.19562 1.21886 0.95893 0.93381 0.93592 1.22670 0.89412 0.93943 0.94926 1.87971 1.47996 1.35459 1.58438 1.22652 0.95121 0.95451 0.93227 1.46008 1.51439 1.11286 1.07839 1.21754 0.98695 1.01198 0.78490 1.22888 0.96096 1.05704 0.96250 1.21010 0.90501 0.89928 0.89145 1.22462 0.96171 1.03117 1.01693 1.21835 1.01728 0.94022 1.02344 1.86438 1.60453 1.20036 1.70060 0.91843 0.91991 0.92416 0.89059 0.90834 0.94412 0.93420 0.92726 0.90682 0.90309 0.93291 0.92242 0.94843 0.94312 0.90343 0.87725 0.90002 0.90812 0.88155 0.91988 0.92013 0.91589 0.91814 0.91980 0.91370 0.76485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.15 0.37 -1.46 16 2 C -0.02 -0.32 6.31 -27.88 -0.18 -0.50 16 3 C 0.15 2.75 7.32 -154.02 -1.13 1.62 16 4 N -0.29 -6.37 12.18 32.99 0.40 -5.97 16 5 N -0.34 -8.03 10.79 30.32 0.33 -7.70 16 6 C 0.42 9.12 5.55 -318.87 -1.77 7.35 16 7 N -0.46 -9.81 4.62 -175.88 -0.81 -10.62 16 8 C 0.19 4.36 4.99 -4.98 -0.02 4.33 16 9 C -0.55 -14.35 7.55 -34.44 -0.26 -14.61 16 10 H 0.07 1.94 6.48 -52.49 -0.34 1.60 16 11 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 12 N -0.89 -23.56 13.29 55.43 0.74 -22.83 16 13 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.08 1.61 4.74 -3.83 -0.02 1.59 16 18 C 0.07 1.17 6.11 37.16 0.23 1.40 16 19 O -0.38 -6.61 10.67 -35.23 -0.38 -6.99 16 20 C 0.03 0.42 11.01 101.05 1.11 1.54 16 21 N -0.47 -8.90 2.81 -114.09 -0.32 -9.22 16 22 C 0.12 1.89 4.72 -4.05 -0.02 1.87 16 23 C -0.17 -2.58 4.57 -26.73 -0.12 -2.71 16 24 C 0.14 1.76 1.09 -90.62 -0.10 1.66 16 25 C -0.18 -2.17 8.82 37.16 0.33 -1.84 16 26 C -0.14 -1.52 8.36 37.16 0.31 -1.21 16 27 O -0.56 -8.26 12.44 -35.23 -0.44 -8.70 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.75 5.76 -51.93 -0.30 0.45 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.78 7.39 -51.93 -0.38 0.40 16 33 H 0.04 0.88 5.15 -51.93 -0.27 0.62 16 34 H 0.05 1.17 6.36 -51.93 -0.33 0.84 16 35 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.07 1.52 7.75 -51.93 -0.40 1.12 16 37 H 0.08 1.71 6.99 -51.93 -0.36 1.35 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.09 6.45 -51.93 -0.33 0.75 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.78 7.67 -51.93 -0.40 1.39 16 44 H 0.08 1.05 5.89 -51.93 -0.31 0.74 16 45 H 0.07 1.06 5.76 -51.93 -0.30 0.76 16 46 H 0.10 1.95 6.06 -51.93 -0.31 1.63 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 51 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 53 H 0.39 5.58 9.05 45.56 0.41 5.99 16 LS Contribution 413.37 15.07 6.23 6.23 Total: -1.00 -30.97 413.37 -8.81 -39.79 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.17 Total: 8.95 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.37 Total: 0.83 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.33 Total: -56.34 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.81 Total: -15.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.97 -8.81 -39.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001390953549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.668 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds