Wall clock time and date at job start Sat Apr 11 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46804 * 2 1 4 4 C 1.53004 * 109.46804 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46965 * 60.00211 * 4 3 2 6 6 O 1.42895 * 109.47133 * 299.99988 * 4 3 2 7 7 C 1.53002 * 109.46804 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.46633 * 178.29630 * 7 4 3 9 9 C 1.36736 * 127.13577 * 269.39755 * 8 7 4 10 10 C 1.50694 * 126.34780 * 359.70407 * 9 8 7 11 11 N 1.30294 * 107.30172 * 179.74162 * 9 8 7 12 12 N 1.28524 * 110.05650 * 0.02562 * 11 9 8 13 13 C 1.31218 * 109.86100 * 359.97438 * 12 11 9 14 14 N 1.38579 * 126.47341 * 180.02562 * 13 12 11 15 15 C 1.46899 * 111.00138 * 254.63312 * 14 13 12 16 16 C 1.50707 * 109.46762 * 65.48570 * 15 14 13 17 17 H 1.07996 * 119.99966 * 3.93210 * 16 15 14 18 18 C 1.37875 * 119.99650 * 183.93560 * 16 15 14 19 19 N 1.31513 * 120.00429 * 5.10826 * 18 16 15 20 20 Si 1.86803 * 119.99749 * 185.10757 * 18 16 15 21 21 H 1.48504 * 109.46741 * 64.99776 * 20 18 16 22 22 H 1.48497 * 109.47257 * 184.99522 * 20 18 16 23 23 H 1.48497 * 109.47140 * 304.99933 * 20 18 16 24 24 C 1.46904 * 111.00068 * 18.59406 * 14 13 12 25 25 C 1.52993 * 109.46982 * 163.41312 * 24 14 13 26 26 O 1.42898 * 109.47722 * 67.67042 * 25 24 14 27 27 C 1.42901 * 114.00607 * 184.83447 * 26 25 24 28 28 H 1.08998 * 109.46919 * 299.99553 * 1 2 3 29 29 H 1.08998 * 109.47417 * 60.00191 * 1 2 3 30 30 H 1.09003 * 109.47207 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46919 * 240.00447 * 2 1 3 32 32 H 1.09003 * 109.47206 * 120.00245 * 2 1 3 33 33 H 1.08998 * 109.47018 * 60.00508 * 3 2 1 34 34 H 1.08998 * 109.46978 * 300.00078 * 3 2 1 35 35 H 1.08996 * 109.46646 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.46941 * 299.99897 * 5 4 3 37 37 H 1.09003 * 109.47131 * 59.99987 * 5 4 3 38 38 H 0.96692 * 114.00440 * 295.35868 * 6 4 3 39 39 H 1.08999 * 109.46771 * 58.29968 * 7 4 3 40 40 H 1.09001 * 109.47298 * 298.29525 * 7 4 3 41 41 H 1.08998 * 109.47051 * 90.00420 * 10 9 8 42 42 H 1.09000 * 109.47067 * 209.99772 * 10 9 8 43 43 H 1.08998 * 109.47638 * 329.99891 * 10 9 8 44 44 H 1.08991 * 109.47415 * 185.48188 * 15 14 13 45 45 H 1.08999 * 109.47164 * 305.48726 * 15 14 13 46 46 H 0.97001 * 119.99726 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.46506 * 283.40988 * 24 14 13 48 48 H 1.08999 * 109.47017 * 43.40812 * 24 14 13 49 49 H 1.09001 * 109.47046 * 187.66933 * 25 24 14 50 50 H 1.09003 * 109.47493 * 307.66996 * 25 24 14 51 51 H 1.09002 * 109.46432 * 304.93838 * 27 26 25 52 52 H 1.08999 * 109.47467 * 64.93135 * 27 26 25 53 53 H 1.09004 * 109.47450 * 184.94298 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0805 0.7211 -1.2483 6 8 4.0458 0.7691 1.1677 7 6 4.0799 2.8851 0.0000 8 7 5.5444 2.8853 0.0417 9 6 6.3385 2.9083 1.1546 10 6 5.8692 2.9449 2.5861 11 7 7.5762 2.8935 0.7478 12 7 7.6178 2.8636 -0.5365 13 6 6.3987 2.8570 -1.0219 14 7 6.0457 2.8267 -2.3616 15 6 5.5654 4.1408 -2.8093 16 6 6.6949 5.1365 -2.7463 17 1 7.6866 4.8113 -2.4687 18 6 6.4621 6.4627 -3.0431 19 7 5.2375 6.8777 -3.2829 20 14 7.8863 7.6699 -3.1046 21 1 8.7969 7.3047 -4.2194 22 1 7.3628 9.0424 -3.3225 23 1 8.6314 7.6223 -1.8210 24 6 7.1667 2.3652 -3.1912 25 6 6.6451 1.9505 -4.5684 26 8 6.1782 3.1053 -5.2686 27 6 5.5677 2.8146 -6.5275 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 5.1705 0.7216 -1.2480 36 1 3.7172 -0.3065 -1.2483 37 1 3.7175 1.2349 -2.1385 38 1 3.8199 1.2120 1.9970 39 1 3.6915 3.4081 0.8739 40 1 3.7422 3.3895 -0.9053 41 1 5.7513 1.9264 2.9559 42 1 6.6042 3.4700 3.1961 43 1 4.9128 3.4647 2.6418 44 1 5.2042 4.0656 -3.8349 45 1 4.7534 4.4709 -2.1614 46 1 5.0738 7.8107 -3.4921 47 1 7.8908 3.1720 -3.3047 48 1 7.6460 1.5115 -2.7120 49 1 7.4495 1.4823 -5.1357 50 1 5.8253 1.2423 -4.4483 51 1 6.2597 2.2391 -7.1424 52 1 4.6584 2.2359 -6.3654 53 1 5.3197 3.7468 -7.0351 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395982797.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:48 Heat of formation + Delta-G solvation = -35.647171 kcal Electronic energy + Delta-G solvation = -33064.235457 eV Core-core repulsion = 28972.020172 eV Total energy + Delta-G solvation = -4092.215285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.77738 -39.79502 -39.44134 -37.64688 -35.51631 -35.06339 -34.63165 -32.80548 -31.85413 -30.72396 -29.18161 -28.15730 -27.52119 -27.29529 -26.92695 -24.62791 -23.51276 -23.00576 -21.48310 -21.19996 -21.01384 -18.84648 -18.18535 -17.74747 -17.54674 -17.11222 -16.73554 -16.57340 -16.31187 -16.05324 -15.70002 -15.61226 -15.44504 -15.08690 -14.76274 -14.48322 -14.18651 -13.79893 -13.60255 -13.37782 -13.28891 -13.24287 -13.18990 -12.98023 -12.86163 -12.74936 -12.70553 -12.61916 -12.59863 -12.44129 -12.35693 -12.22381 -12.10847 -11.91119 -11.75140 -11.68006 -11.42033 -11.21280 -11.15636 -10.63189 -10.43946 -10.27684 -10.16071 -9.04228 -8.16995 -6.24490 1.06697 1.31291 1.32148 1.40733 1.51997 2.07894 2.38015 3.02822 3.10683 3.17553 3.29398 3.52742 3.62310 3.70634 3.90550 4.08973 4.17207 4.21854 4.32831 4.34948 4.39005 4.44810 4.48565 4.52168 4.62762 4.65714 4.66587 4.72981 4.78448 4.83521 4.88110 4.94013 4.98048 5.00325 5.01564 5.08637 5.11851 5.14367 5.23026 5.27218 5.30449 5.35599 5.49381 5.54232 5.54701 5.78896 5.84443 5.98779 6.17106 6.49301 6.61380 6.84430 6.86790 7.41088 8.01798 8.88138 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.009836 B = 0.004588 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.084931 B = 6101.904097 C = 7171.449413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.134 4.134 4 C 0.135 3.865 5 C -0.127 4.127 6 O -0.558 6.558 7 C 0.079 3.921 8 N -0.463 5.463 9 C 0.174 3.826 10 C -0.056 4.056 11 N -0.344 5.344 12 N -0.375 5.375 13 C 0.388 3.612 14 N -0.443 5.443 15 C 0.211 3.789 16 C -0.537 4.537 17 H 0.042 0.958 18 C 0.027 3.973 19 N -0.916 5.916 20 Si 0.936 3.064 21 H -0.273 1.273 22 H -0.276 1.276 23 H -0.289 1.289 24 C 0.075 3.925 25 C 0.077 3.923 26 O -0.398 6.398 27 C 0.028 3.972 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.385 0.615 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.005 0.995 46 H 0.263 0.737 47 H 0.039 0.961 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.065 0.935 51 H 0.054 0.946 52 H 0.048 0.952 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.493 -13.568 6.093 18.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.172 4.172 4 C 0.094 3.906 5 C -0.184 4.184 6 O -0.365 6.365 7 C -0.044 4.044 8 N -0.157 5.157 9 C -0.095 4.095 10 C -0.115 4.115 11 N -0.183 5.183 12 N -0.218 5.218 13 C 0.030 3.970 14 N -0.167 5.167 15 C 0.086 3.914 16 C -0.576 4.576 17 H 0.060 0.940 18 C -0.172 4.172 19 N -0.557 5.557 20 Si 0.763 3.237 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.215 1.215 24 C -0.053 4.053 25 C 0.000 4.000 26 O -0.317 6.317 27 C -0.068 4.068 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.083 0.917 51 H 0.073 0.927 52 H 0.067 0.933 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.242 -13.966 5.635 18.213 hybrid contribution 0.092 1.892 -0.156 1.901 sum -10.150 -12.074 5.478 16.698 Atomic orbital electron populations 1.21770 0.95081 1.01909 1.02023 1.21413 0.95980 0.95538 1.02274 1.22155 0.92207 0.98880 1.03942 1.21414 0.93765 0.88295 0.87147 1.21669 1.00524 1.00721 0.95524 1.86622 1.80743 1.53139 1.16034 1.22902 0.75303 1.00248 1.05953 1.45976 1.08447 1.56126 1.05135 1.25479 0.86949 1.04132 0.92964 1.20383 1.02852 1.05299 0.82977 1.73711 1.19009 1.21221 1.04375 1.74447 1.19055 1.25327 1.02981 1.22642 0.85469 0.99405 0.89448 1.59559 1.33094 1.28972 0.95113 1.19780 0.93642 0.80947 0.97044 1.21752 0.95995 0.94217 1.45623 0.94009 1.25386 0.97203 0.99447 0.95183 1.69984 1.20117 1.16519 1.49064 0.85959 0.80732 0.78932 0.78072 1.19808 1.20058 1.21500 1.21950 0.91558 0.99624 0.92145 1.22488 0.98691 0.87985 0.90816 1.88221 1.78491 1.31739 1.33247 1.22800 0.97039 1.01756 0.85212 0.92130 0.92908 0.92426 0.92587 0.91538 0.89468 0.90878 0.94662 0.91225 0.91140 0.76573 0.86240 0.89388 0.87391 0.88957 0.88308 0.91641 0.97704 0.92844 0.94218 0.90061 0.90936 0.91724 0.92710 0.93319 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.11 -1.78 5.44 30.60 0.17 -1.61 16 3 C -0.13 -2.17 4.48 30.60 0.14 -2.03 16 4 C 0.14 2.96 0.85 -10.79 -0.01 2.95 16 5 C -0.13 -3.41 7.64 71.98 0.55 -2.86 16 6 O -0.56 -11.48 11.69 -148.98 -1.74 -13.22 16 7 C 0.08 2.13 5.09 86.38 0.44 2.57 16 8 N -0.46 -16.69 2.45 -514.85 -1.26 -17.96 16 9 C 0.17 6.13 7.76 137.64 1.07 7.20 16 10 C -0.06 -1.17 9.53 71.23 0.68 -0.49 16 11 N -0.34 -15.48 12.18 -49.54 -0.60 -16.08 16 12 N -0.37 -18.40 11.33 -58.01 -0.66 -19.06 16 13 C 0.39 17.11 4.45 260.11 1.16 18.27 16 14 N -0.44 -18.95 3.79 -710.37 -2.69 -21.64 16 15 C 0.21 10.60 4.58 85.56 0.39 10.99 16 16 C -0.54 -30.74 7.69 25.60 0.20 -30.54 16 17 H 0.04 2.57 6.35 -2.91 -0.02 2.55 16 18 C 0.03 1.58 5.45 84.65 0.46 2.04 16 19 N -0.92 -53.66 13.29 21.45 0.29 -53.38 16 20 Si 0.94 47.03 29.54 68.60 2.03 49.06 16 21 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 24 C 0.08 3.08 4.82 86.30 0.42 3.49 16 25 C 0.08 2.57 6.22 71.98 0.45 3.02 16 26 O -0.40 -15.48 7.77 -148.98 -1.16 -16.64 16 27 C 0.03 0.80 11.01 113.37 1.25 2.05 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.98 6.43 -2.39 -0.02 0.96 16 32 H 0.07 1.06 7.68 -2.39 -0.02 1.04 16 33 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.03 1.18 6.12 -2.39 -0.01 1.17 16 36 H 0.07 1.67 6.43 -2.39 -0.02 1.65 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.38 4.75 8.09 -74.06 -0.60 4.15 16 39 H 0.12 2.39 7.23 -2.39 -0.02 2.37 16 40 H 0.09 2.84 6.37 -2.39 -0.02 2.82 16 41 H 0.11 1.70 7.77 -2.39 -0.02 1.68 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 1.43 7.26 -2.39 -0.02 1.42 16 44 H 0.07 3.46 5.51 -2.39 -0.01 3.45 16 45 H 0.00 0.27 6.41 -2.39 -0.02 0.25 16 46 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 47 H 0.04 1.93 5.98 -2.39 -0.01 1.92 16 48 H 0.08 3.18 7.80 -2.39 -0.02 3.16 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 52 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 53 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -77.97 409.70 2.57 -75.40 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.31 Total: 19.70 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 8.07 Total: 13.81 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -4.93 Total: -128.12 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -2.90 Total: -29.86 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -77.97 2.57 -75.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395982797.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.750 kcal (2) G-P(sol) polarization free energy of solvation -77.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds