Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47236 * 2 1 4 4 C 1.52998 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47561 * 305.00068 * 4 3 2 6 6 O 1.42899 * 109.47167 * 65.00360 * 4 3 2 7 7 C 1.53010 * 109.46963 * 185.00038 * 4 3 2 8 8 N 1.46497 * 109.47171 * 178.31851 * 7 4 3 9 9 C 1.36742 * 127.13638 * 89.11695 * 8 7 4 10 10 C 1.50696 * 126.34758 * 0.22931 * 9 8 7 11 11 N 1.30293 * 107.30309 * 180.26323 * 9 8 7 12 12 N 1.28526 * 110.05656 * 0.02562 * 11 9 8 13 13 C 1.31218 * 109.86255 * 0.02562 * 12 11 9 14 14 N 1.38579 * 126.47694 * 180.02562 * 13 12 11 15 15 C 1.46901 * 110.99906 * 79.67088 * 14 13 12 16 16 C 1.50698 * 109.46969 * 294.59802 * 15 14 13 17 17 H 1.07995 * 120.00218 * 3.40647 * 16 15 14 18 18 C 1.37882 * 119.99901 * 183.41110 * 16 15 14 19 19 N 1.31510 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47517 * 89.99565 * 20 18 16 22 22 H 1.48497 * 109.46967 * 210.00007 * 20 18 16 23 23 H 1.48499 * 109.46952 * 329.99676 * 20 18 16 24 24 C 1.46895 * 111.00054 * 315.71729 * 14 13 12 25 25 C 1.52999 * 109.47522 * 195.13332 * 24 14 13 26 26 O 1.42900 * 109.46813 * 64.89221 * 25 24 14 27 27 C 1.42903 * 113.99608 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46694 * 299.99552 * 1 2 3 29 29 H 1.09000 * 109.47185 * 59.99499 * 1 2 3 30 30 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46974 * 240.00002 * 2 1 3 32 32 H 1.09000 * 109.47185 * 120.00501 * 2 1 3 33 33 H 1.08999 * 109.47137 * 60.00103 * 3 2 1 34 34 H 1.09000 * 109.47443 * 300.00343 * 3 2 1 35 35 H 1.09001 * 109.47189 * 300.00026 * 5 4 3 36 36 H 1.09004 * 109.46878 * 59.99973 * 5 4 3 37 37 H 1.09002 * 109.47477 * 179.97438 * 5 4 3 38 38 H 0.96702 * 114.00265 * 58.60239 * 6 4 3 39 39 H 1.08997 * 109.46689 * 58.31689 * 7 4 3 40 40 H 1.09004 * 109.46738 * 298.31617 * 7 4 3 41 41 H 1.09001 * 109.46947 * 89.99554 * 10 9 8 42 42 H 1.08999 * 109.47135 * 209.99917 * 10 9 8 43 43 H 1.09001 * 109.47541 * 329.99832 * 10 9 8 44 44 H 1.08999 * 109.46612 * 54.59356 * 15 14 13 45 45 H 1.08996 * 109.46844 * 174.59355 * 15 14 13 46 46 H 0.97006 * 119.99914 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.47341 * 315.13454 * 24 14 13 48 48 H 1.09000 * 109.47321 * 75.13250 * 24 14 13 49 49 H 1.08993 * 109.47670 * 184.89849 * 25 24 14 50 50 H 1.08999 * 109.46752 * 304.89752 * 25 24 14 51 51 H 1.09000 * 109.47286 * 300.00047 * 27 26 25 52 52 H 1.08997 * 109.47127 * 60.00852 * 27 26 25 53 53 H 1.09001 * 109.46923 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0806 0.6148 1.1805 6 8 4.0458 0.8732 -1.2220 7 6 4.0802 2.8794 0.1251 8 7 5.5446 2.8761 0.1649 9 6 6.3995 2.9419 -0.9003 10 6 6.0106 3.0376 -2.3531 11 7 7.6126 2.9060 -0.4263 12 7 7.5826 2.8220 0.8558 13 6 6.3384 2.7991 1.2721 14 7 5.9113 2.7148 2.5877 15 6 5.9876 4.0234 3.2508 16 6 7.4290 4.4509 3.3542 17 1 8.2058 3.8408 2.9175 18 6 7.7560 5.6208 4.0064 19 7 6.8100 6.3639 4.5377 20 14 9.5428 6.1503 4.1352 21 1 9.8942 6.9955 2.9658 22 1 9.7398 6.9277 5.3850 23 1 10.4148 4.9485 4.1571 24 6 6.6797 1.7045 3.3270 25 6 5.9562 1.3676 4.6323 26 8 4.7021 0.7499 4.3360 27 6 3.9420 0.3939 5.4926 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.7177 1.0490 2.1122 36 1 3.7172 -0.4089 1.0909 37 1 5.1706 0.6144 1.1798 38 1 3.7427 1.3352 -2.0156 39 1 3.6927 3.3235 1.0420 40 1 3.7413 3.4615 -0.7320 41 1 5.9206 4.0862 -2.6368 42 1 6.7748 2.5596 -2.9660 43 1 5.0551 2.5362 -2.5073 44 1 5.4315 4.7585 2.6690 45 1 5.5577 3.9501 4.2498 46 1 7.0400 7.1873 4.9962 47 1 6.7732 0.8036 2.7206 48 1 7.6719 2.0955 3.5521 49 1 6.5679 0.6841 5.2210 50 1 5.7854 2.2826 5.1995 51 1 4.5118 -0.3098 6.0994 52 1 3.7294 1.2888 6.0773 53 1 3.0051 -0.0694 5.1832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001395982799.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -14.072021 kcal Electronic energy + Delta-G solvation = -33074.508914 eV Core-core repulsion = 28983.229197 eV Total energy + Delta-G solvation = -4091.279716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28619 -38.82528 -37.89984 -36.29083 -34.44505 -34.10764 -32.54367 -31.59398 -30.72315 -29.19767 -27.49637 -26.90747 -26.39531 -26.13407 -25.58373 -23.05063 -22.26679 -21.69923 -20.51942 -19.80487 -19.51587 -17.29987 -16.46194 -16.32244 -16.07188 -15.95996 -15.63103 -15.28767 -14.95926 -14.68479 -14.49848 -14.36499 -14.29420 -13.69717 -13.50709 -13.39326 -12.81074 -12.61083 -12.49551 -12.36220 -12.10535 -12.02279 -11.86777 -11.83750 -11.64675 -11.61129 -11.34685 -11.30653 -11.05537 -10.89338 -10.86238 -10.83113 -10.60221 -10.54029 -10.40054 -10.23338 -10.11411 -9.93491 -9.35929 -9.24008 -9.13762 -8.43767 -8.25816 -7.57427 -6.05258 -4.10156 2.46485 2.87143 3.34136 3.40239 3.47436 3.66912 4.11696 4.24434 4.45624 4.46565 4.61725 4.71998 4.77856 4.88233 4.90845 5.08599 5.22617 5.29293 5.30571 5.39788 5.47085 5.52618 5.57831 5.62987 5.63749 5.66143 5.73129 5.76079 5.77780 5.84947 5.87538 5.90007 5.99151 6.07052 6.11881 6.13630 6.20209 6.28517 6.29676 6.46652 6.67181 6.73098 6.75368 7.04392 7.34661 7.39742 7.52822 7.57649 7.73312 7.94580 8.15806 8.28204 9.02159 9.55507 9.59304 11.01986 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.004556 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.562710 B = 6144.813020 C = 7724.892792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.119 3.881 5 C -0.128 4.128 6 O -0.549 6.549 7 C 0.091 3.909 8 N -0.463 5.463 9 C 0.161 3.839 10 C -0.054 4.054 11 N -0.298 5.298 12 N -0.307 5.307 13 C 0.392 3.608 14 N -0.462 5.462 15 C 0.195 3.805 16 C -0.546 4.546 17 H 0.080 0.920 18 C 0.066 3.934 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.271 1.271 24 C 0.079 3.921 25 C 0.069 3.931 26 O -0.378 6.378 27 C 0.032 3.968 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.365 0.635 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.261 0.739 47 H 0.062 0.938 48 H 0.084 0.916 49 H 0.046 0.954 50 H 0.063 0.937 51 H 0.032 0.968 52 H 0.038 0.962 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.442 -11.262 -7.734 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.178 4.178 4 C 0.078 3.922 5 C -0.185 4.185 6 O -0.354 6.354 7 C -0.033 4.033 8 N -0.157 5.157 9 C -0.106 4.106 10 C -0.113 4.113 11 N -0.139 5.139 12 N -0.149 5.149 13 C 0.036 3.964 14 N -0.188 5.188 15 C 0.071 3.929 16 C -0.585 4.585 17 H 0.098 0.902 18 C -0.136 4.136 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.196 1.196 24 C -0.049 4.049 25 C -0.007 4.007 26 O -0.297 6.297 27 C -0.065 4.065 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.212 0.788 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.102 0.898 49 H 0.065 0.935 50 H 0.081 0.919 51 H 0.051 0.949 52 H 0.056 0.944 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.229 -11.687 -7.342 18.440 hybrid contribution -0.021 1.412 0.135 1.418 sum -12.250 -10.275 -7.207 17.538 Atomic orbital electron populations 1.21790 0.96154 1.01436 1.01586 1.21492 0.95126 0.96209 1.02913 1.22202 0.94561 0.98263 1.02795 1.21687 0.92323 0.91627 0.86572 1.21779 1.02335 0.98849 0.95499 1.86716 1.75853 1.58043 1.14820 1.22449 0.77629 0.98340 1.04907 1.45980 1.07217 1.56088 1.06431 1.24403 0.87057 1.07198 0.91927 1.20062 1.02127 1.02603 0.86546 1.73919 1.18085 1.18333 1.03590 1.74727 1.16430 1.20753 1.02993 1.22403 0.85215 1.00228 0.88524 1.59421 1.52384 1.11417 0.95528 1.19897 0.97113 0.81577 0.94306 1.21945 0.93440 1.07646 1.35465 0.90191 1.24906 0.97348 0.96282 0.95071 1.69947 1.32253 1.14314 1.37104 0.86570 0.85393 0.78854 0.77152 1.20751 1.21440 1.19558 1.21963 0.96402 0.93436 0.93066 1.22614 0.84359 0.96577 0.97190 1.87928 1.31887 1.79982 1.29890 1.22635 0.95724 0.98771 0.89348 0.92756 0.93071 0.92909 0.91609 0.91257 0.90520 0.91872 0.88909 0.92625 0.92075 0.78772 0.87474 0.89805 0.90753 0.89357 0.91238 0.95823 0.93327 0.92940 0.91963 0.89842 0.93547 0.91923 0.94943 0.94356 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.07 5.34 -26.73 -0.14 -1.21 16 3 C -0.14 -1.26 4.47 -26.73 -0.12 -1.38 16 4 C 0.12 1.39 0.86 -90.62 -0.08 1.31 16 5 C -0.13 -1.81 7.47 37.15 0.28 -1.54 16 6 O -0.55 -6.31 11.38 -35.23 -0.40 -6.71 16 7 C 0.09 1.22 5.04 -4.04 -0.02 1.20 16 8 N -0.46 -8.22 2.40 -114.08 -0.27 -8.49 16 9 C 0.16 2.89 7.79 -154.02 -1.20 1.69 16 10 C -0.05 -0.64 10.07 36.00 0.36 -0.28 16 11 N -0.30 -6.63 12.18 32.99 0.40 -6.23 16 12 N -0.31 -7.37 10.46 30.32 0.32 -7.05 16 13 C 0.39 8.39 4.43 -318.87 -1.41 6.98 16 14 N -0.46 -9.55 4.04 -175.89 -0.71 -10.26 16 15 C 0.20 4.80 4.90 -4.98 -0.02 4.77 16 16 C -0.55 -14.93 7.48 -34.44 -0.26 -15.19 16 17 H 0.08 2.28 5.52 -52.49 -0.29 1.99 16 18 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 19 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 20 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.08 1.54 4.72 -3.83 -0.02 1.52 16 25 C 0.07 1.17 6.07 37.16 0.23 1.39 16 26 O -0.38 -5.89 9.53 -35.23 -0.34 -6.23 16 27 C 0.03 0.39 11.01 101.05 1.11 1.50 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 32 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 36 H 0.05 0.74 6.35 -51.93 -0.33 0.41 16 37 H 0.06 1.08 5.53 -51.93 -0.29 0.79 16 38 H 0.37 2.80 7.39 45.56 0.34 3.14 16 39 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.08 0.88 7.93 -51.93 -0.41 0.47 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.61 5.37 -51.93 -0.28 0.33 16 44 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 45 H 0.05 1.24 6.63 -51.93 -0.34 0.90 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.06 1.20 7.38 -51.93 -0.38 0.81 16 48 H 0.08 1.83 6.15 -51.93 -0.32 1.51 16 49 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 50 H 0.06 1.16 6.58 -51.93 -0.34 0.82 16 51 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 53 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 409.25 15.07 6.17 6.17 Total: -1.00 -33.48 409.25 -8.52 -42.00 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.38 Total: 2.98 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.02 Total: 1.74 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.47 Total: -57.23 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.74 Total: -12.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.48 -8.52 -42.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395982799.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.926 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds