Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47236 * 2 1 4 4 C 1.52998 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47561 * 305.00068 * 4 3 2 6 6 O 1.42899 * 109.47167 * 65.00360 * 4 3 2 7 7 C 1.53010 * 109.46963 * 185.00038 * 4 3 2 8 8 N 1.46497 * 109.47171 * 178.31851 * 7 4 3 9 9 C 1.36742 * 127.13638 * 89.11695 * 8 7 4 10 10 C 1.50696 * 126.34758 * 0.22931 * 9 8 7 11 11 N 1.30293 * 107.30309 * 180.26323 * 9 8 7 12 12 N 1.28526 * 110.05656 * 0.02562 * 11 9 8 13 13 C 1.31218 * 109.86255 * 0.02562 * 12 11 9 14 14 N 1.38579 * 126.47694 * 180.02562 * 13 12 11 15 15 C 1.46901 * 110.99906 * 79.67088 * 14 13 12 16 16 C 1.50698 * 109.46969 * 294.59802 * 15 14 13 17 17 H 1.07995 * 120.00218 * 3.40647 * 16 15 14 18 18 C 1.37882 * 119.99901 * 183.41110 * 16 15 14 19 19 N 1.31510 * 119.99716 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00030 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47517 * 89.99565 * 20 18 16 22 22 H 1.48497 * 109.46967 * 210.00007 * 20 18 16 23 23 H 1.48499 * 109.46952 * 329.99676 * 20 18 16 24 24 C 1.46895 * 111.00054 * 315.71729 * 14 13 12 25 25 C 1.52999 * 109.47522 * 195.13332 * 24 14 13 26 26 O 1.42900 * 109.46813 * 64.89221 * 25 24 14 27 27 C 1.42903 * 113.99608 * 180.02562 * 26 25 24 28 28 H 1.09002 * 109.46694 * 299.99552 * 1 2 3 29 29 H 1.09000 * 109.47185 * 59.99499 * 1 2 3 30 30 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46974 * 240.00002 * 2 1 3 32 32 H 1.09000 * 109.47185 * 120.00501 * 2 1 3 33 33 H 1.08999 * 109.47137 * 60.00103 * 3 2 1 34 34 H 1.09000 * 109.47443 * 300.00343 * 3 2 1 35 35 H 1.09001 * 109.47189 * 300.00026 * 5 4 3 36 36 H 1.09004 * 109.46878 * 59.99973 * 5 4 3 37 37 H 1.09002 * 109.47477 * 179.97438 * 5 4 3 38 38 H 0.96702 * 114.00265 * 58.60239 * 6 4 3 39 39 H 1.08997 * 109.46689 * 58.31689 * 7 4 3 40 40 H 1.09004 * 109.46738 * 298.31617 * 7 4 3 41 41 H 1.09001 * 109.46947 * 89.99554 * 10 9 8 42 42 H 1.08999 * 109.47135 * 209.99917 * 10 9 8 43 43 H 1.09001 * 109.47541 * 329.99832 * 10 9 8 44 44 H 1.08999 * 109.46612 * 54.59356 * 15 14 13 45 45 H 1.08996 * 109.46844 * 174.59355 * 15 14 13 46 46 H 0.97006 * 119.99914 * 180.02562 * 19 18 16 47 47 H 1.08998 * 109.47341 * 315.13454 * 24 14 13 48 48 H 1.09000 * 109.47321 * 75.13250 * 24 14 13 49 49 H 1.08993 * 109.47670 * 184.89849 * 25 24 14 50 50 H 1.08999 * 109.46752 * 304.89752 * 25 24 14 51 51 H 1.09000 * 109.47286 * 300.00047 * 27 26 25 52 52 H 1.08997 * 109.47127 * 60.00852 * 27 26 25 53 53 H 1.09001 * 109.46923 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0806 0.6148 1.1805 6 8 4.0458 0.8732 -1.2220 7 6 4.0802 2.8794 0.1251 8 7 5.5446 2.8761 0.1649 9 6 6.3995 2.9419 -0.9003 10 6 6.0106 3.0376 -2.3531 11 7 7.6126 2.9060 -0.4263 12 7 7.5826 2.8220 0.8558 13 6 6.3384 2.7991 1.2721 14 7 5.9113 2.7148 2.5877 15 6 5.9876 4.0234 3.2508 16 6 7.4290 4.4509 3.3542 17 1 8.2058 3.8408 2.9175 18 6 7.7560 5.6208 4.0064 19 7 6.8100 6.3639 4.5377 20 14 9.5428 6.1503 4.1352 21 1 9.8942 6.9955 2.9658 22 1 9.7398 6.9277 5.3850 23 1 10.4148 4.9485 4.1571 24 6 6.6797 1.7045 3.3270 25 6 5.9562 1.3676 4.6323 26 8 4.7021 0.7499 4.3360 27 6 3.9420 0.3939 5.4926 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9564 -0.8899 35 1 3.7177 1.0490 2.1122 36 1 3.7172 -0.4089 1.0909 37 1 5.1706 0.6144 1.1798 38 1 3.7427 1.3352 -2.0156 39 1 3.6927 3.3235 1.0420 40 1 3.7413 3.4615 -0.7320 41 1 5.9206 4.0862 -2.6368 42 1 6.7748 2.5596 -2.9660 43 1 5.0551 2.5362 -2.5073 44 1 5.4315 4.7585 2.6690 45 1 5.5577 3.9501 4.2498 46 1 7.0400 7.1873 4.9962 47 1 6.7732 0.8036 2.7206 48 1 7.6719 2.0955 3.5521 49 1 6.5679 0.6841 5.2210 50 1 5.7854 2.2826 5.1995 51 1 4.5118 -0.3098 6.0994 52 1 3.7294 1.2888 6.0773 53 1 3.0051 -0.0694 5.1832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001395982799.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -36.706968 kcal Electronic energy + Delta-G solvation = -33075.490439 eV Core-core repulsion = 28983.229197 eV Total energy + Delta-G solvation = -4092.261241 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.226 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.79413 -39.79309 -39.37268 -37.77650 -35.51965 -35.10193 -34.63586 -32.83186 -31.81885 -30.67715 -29.14266 -28.10430 -27.59142 -27.27229 -26.90965 -24.91588 -23.41320 -23.02406 -21.57091 -21.12977 -20.93195 -18.83257 -18.09588 -17.76566 -17.53632 -17.26402 -16.69354 -16.54369 -16.32879 -15.99704 -15.83109 -15.57419 -15.43037 -15.06016 -14.79931 -14.57100 -14.19325 -13.85130 -13.64231 -13.40637 -13.26606 -13.24422 -13.08108 -13.02479 -12.83724 -12.77110 -12.71281 -12.59748 -12.53079 -12.47907 -12.36215 -12.16731 -12.02254 -11.92155 -11.77792 -11.69963 -11.38634 -11.24368 -11.09470 -10.63717 -10.45387 -10.37642 -9.89557 -9.31915 -8.21197 -6.32097 1.00314 1.32059 1.34768 1.45928 1.50543 2.06987 2.37361 2.97802 3.04680 3.09371 3.29886 3.56284 3.64249 3.72726 3.92045 4.11372 4.15225 4.24392 4.28864 4.35273 4.42179 4.47195 4.51586 4.56519 4.64872 4.67490 4.69806 4.74660 4.79603 4.87205 4.91020 4.92521 4.96947 5.01759 5.04118 5.07827 5.10201 5.13050 5.20187 5.27321 5.30964 5.33485 5.39742 5.54854 5.58637 5.73718 5.81103 5.96595 6.10149 6.39602 6.60072 6.85412 6.89103 7.37422 8.00254 8.84497 Molecular weight = 340.23amu Principal moments of inertia in cm(-1) A = 0.010723 B = 0.004556 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.562710 B = 6144.813020 C = 7724.892792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.131 4.131 4 C 0.132 3.868 5 C -0.118 4.118 6 O -0.560 6.560 7 C 0.082 3.918 8 N -0.459 5.459 9 C 0.179 3.821 10 C -0.054 4.054 11 N -0.349 5.349 12 N -0.353 5.353 13 C 0.372 3.628 14 N -0.442 5.442 15 C 0.216 3.784 16 C -0.549 4.549 17 H 0.065 0.935 18 C 0.023 3.977 19 N -0.922 5.922 20 Si 0.945 3.055 21 H -0.287 1.287 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.085 3.915 25 C 0.082 3.918 26 O -0.390 6.390 27 C 0.027 3.973 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.022 0.978 38 H 0.385 0.615 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.106 0.894 44 H -0.003 1.003 45 H 0.038 0.962 46 H 0.264 0.736 47 H 0.061 0.939 48 H 0.054 0.946 49 H 0.070 0.930 50 H 0.043 0.957 51 H 0.048 0.952 52 H 0.036 0.964 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 -11.834 -9.379 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.091 3.909 5 C -0.175 4.175 6 O -0.369 6.369 7 C -0.041 4.041 8 N -0.152 5.152 9 C -0.089 4.089 10 C -0.113 4.113 11 N -0.190 5.190 12 N -0.195 5.195 13 C 0.014 3.986 14 N -0.167 5.167 15 C 0.091 3.909 16 C -0.588 4.588 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.562 5.562 20 Si 0.772 3.228 21 H -0.213 1.213 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.043 4.043 25 C 0.004 3.996 26 O -0.309 6.309 27 C -0.069 4.069 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.235 0.765 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.015 0.985 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.061 0.939 51 H 0.066 0.934 52 H 0.054 0.946 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.324 -12.271 -9.002 20.900 hybrid contribution 0.556 1.510 0.549 1.701 sum -13.767 -10.761 -8.454 19.411 Atomic orbital electron populations 1.21759 0.94963 1.01855 1.02085 1.21447 0.96104 0.95835 1.02098 1.22145 0.91980 0.98708 1.04108 1.21467 0.93921 0.89619 0.85920 1.21626 0.99606 0.99731 0.96584 1.86688 1.76286 1.58460 1.15461 1.22870 0.74953 1.00261 1.06026 1.46200 1.08826 1.54909 1.05230 1.25558 0.85976 1.03302 0.94105 1.20397 1.04152 1.04544 0.82207 1.73806 1.20751 1.21367 1.03061 1.74566 1.18411 1.22180 1.04376 1.22460 0.85565 1.01334 0.89203 1.59391 1.52233 1.09558 0.95520 1.19467 0.95109 0.82883 0.93487 1.22095 0.94432 1.07457 1.34784 0.91674 1.25548 1.00605 0.96484 0.95071 1.70019 1.33653 1.14722 1.37821 0.85748 0.81494 0.78295 0.77291 1.21308 1.19936 1.19686 1.21881 0.95398 0.92802 0.94240 1.22372 0.85406 0.96487 0.95288 1.87900 1.31424 1.79795 1.31794 1.22856 0.96365 0.99175 0.88529 0.92809 0.91994 0.92615 0.91799 0.92741 0.90685 0.89082 0.90077 0.92101 0.95910 0.76450 0.88854 0.85861 0.88731 0.88512 0.87607 0.98488 0.94393 0.92686 0.92004 0.92772 0.91220 0.93886 0.93352 0.94568 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.79 5.34 30.59 0.16 -1.63 16 3 C -0.13 -1.96 4.47 30.59 0.14 -1.83 16 4 C 0.13 2.80 0.86 -10.79 -0.01 2.79 16 5 C -0.12 -3.33 7.47 71.98 0.54 -2.79 16 6 O -0.56 -11.13 11.38 -148.98 -1.69 -12.82 16 7 C 0.08 2.03 5.04 86.38 0.44 2.47 16 8 N -0.46 -16.12 2.40 -514.84 -1.23 -17.35 16 9 C 0.18 6.25 7.79 137.64 1.07 7.32 16 10 C -0.05 -1.10 10.07 71.23 0.72 -0.38 16 11 N -0.35 -15.86 12.18 -49.54 -0.60 -16.47 16 12 N -0.35 -17.70 10.46 -58.00 -0.61 -18.31 16 13 C 0.37 16.47 4.43 260.11 1.15 17.62 16 14 N -0.44 -19.12 4.04 -710.38 -2.87 -21.99 16 15 C 0.22 11.11 4.90 85.56 0.42 11.53 16 16 C -0.55 -31.20 7.48 25.60 0.19 -31.01 16 17 H 0.07 3.89 5.52 -2.91 -0.02 3.88 16 18 C 0.02 1.29 5.46 84.66 0.46 1.75 16 19 N -0.92 -54.29 13.29 21.45 0.28 -54.00 16 20 Si 0.95 46.71 29.54 68.60 2.03 48.73 16 21 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.27 -13.38 7.11 99.48 0.71 -12.68 16 24 C 0.08 3.47 4.72 86.30 0.41 3.88 16 25 C 0.08 2.81 6.07 71.98 0.44 3.25 16 26 O -0.39 -12.16 9.53 -148.98 -1.42 -13.58 16 27 C 0.03 0.62 11.01 113.37 1.25 1.87 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 1.01 7.82 -2.39 -0.02 1.00 16 32 H 0.05 0.99 6.35 -2.39 -0.02 0.98 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 2.44 6.99 -2.39 -0.02 2.43 16 36 H 0.06 1.60 6.35 -2.38 -0.02 1.59 16 37 H 0.02 0.80 5.53 -2.39 -0.01 0.79 16 38 H 0.39 4.04 7.39 -74.06 -0.55 3.49 16 39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.12 2.09 7.93 -2.38 -0.02 2.07 16 41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.11 1.35 5.37 -2.39 -0.01 1.34 16 44 H 0.00 -0.17 8.11 -2.39 -0.02 -0.19 16 45 H 0.04 2.03 6.63 -2.39 -0.02 2.01 16 46 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 47 H 0.06 2.52 7.38 -2.39 -0.02 2.50 16 48 H 0.05 2.54 6.15 -2.39 -0.01 2.52 16 49 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.04 1.65 6.58 -2.39 -0.02 1.64 16 51 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.14 409.25 2.33 -74.81 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.36 Total: 17.27 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 8.08 Total: 13.71 kcal Atomic # 7 Polarization: -123.09 SS G_CDS: -5.03 Total: -128.12 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -3.11 Total: -26.41 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -77.14 2.33 -74.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001395982799.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.107 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds